Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS18050

Experiment: R2A with SpecU metal mix 1 X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with SpecU metal mix 1 X
3,939,363	-				-0.0
3,939,516	+				-0.9
3,939,516	+				-0.9
3,939,516	+				-1.9
3,939,516	+				+0.1
3,939,516	+				+0.7
3,939,516	+				+0.7
3,939,516	+				-1.6
3,939,517	-				-0.9
3,939,517	-				-1.3
3,939,517	-				-0.9
3,939,517	-				-1.3
3,939,517	-				+0.7
3,939,966	+				+1.3
3,939,966	+				-0.3
3,939,966	+				-0.7
3,940,063	+		LRK54_RS18045	0.34	-1.3
3,940,064	-		LRK54_RS18045	0.34	-2.3
3,940,236	+				-2.4
3,940,236	+				-1.9
3,940,236	+				-1.3
3,940,236	+				-0.5
3,940,236	+				-0.3
3,940,236	+				-0.9
3,940,236	+				-1.3
3,940,236	+				+0.7
3,940,236	+				-0.9
3,940,236	+				-0.9
3,940,236	+				-2.1
3,940,236	+				-3.4
3,940,236	+				-1.9
3,940,236	+				-1.6
3,940,236	+				-1.3
3,940,236	+				-2.9
3,940,236	+				-0.3
3,940,236	+				-0.9
3,940,236	+				+0.7
3,940,236	+				-1.6
3,940,236	+				-0.9
3,940,236	+				-0.9
3,940,236	+				-2.4
3,940,236	+				-1.3
3,940,236	+				-1.0
3,940,236	+				-2.6
3,940,236	+				-3.9
3,940,236	+				-0.9
3,940,236	+				-1.3
3,940,236	+				-0.9
3,940,236	+				-0.9
3,940,236	+				+0.7
3,940,237	-				-0.3
3,940,237	-				-0.9
3,940,237	-				-1.6
3,940,237	-				-1.9
3,940,237	-				-1.9
3,940,237	-				-0.9
3,940,237	-				-1.9
3,940,237	-				-1.6
3,940,237	-				-1.9
3,940,237	-				-1.6
3,940,237	-				-2.3
3,940,237	-				-1.3
3,940,237	-				-4.2
3,940,237	-				-0.9
3,940,237	-				+0.1
3,940,237	-				-2.6
3,940,237	-				-4.4
3,940,237	-				-0.9
3,940,237	-				-2.7
3,940,237	-				+0.7
3,940,237	-				+0.7
3,940,237	-				-1.3
3,940,237	-				-1.6
3,940,237	-				-0.3
3,940,237	-				+0.1
3,940,237	-				-0.3
3,940,237	-				+0.7
3,940,237	-				-1.6
3,940,237	-				-0.3
3,940,237	-				-0.9
3,940,344	+		LRK54_RS18050	0.10	-0.3
3,940,344	+		LRK54_RS18050	0.10	-1.3
3,940,344	+		LRK54_RS18050	0.10	-0.9
3,940,344	+		LRK54_RS18050	0.10	-0.3
3,940,344	+		LRK54_RS18050	0.10	+0.7
3,940,344	+		LRK54_RS18050	0.10	-3.6
3,940,345	-		LRK54_RS18050	0.10	-1.3
3,940,345	-		LRK54_RS18050	0.10	-2.4
3,940,345	-		LRK54_RS18050	0.10	-0.4
3,940,345	-		LRK54_RS18050	0.10	-0.3
3,940,362	+		LRK54_RS18050	0.12	-0.9
3,940,362	+		LRK54_RS18050	0.12	-2.7
3,940,362	+		LRK54_RS18050	0.12	-1.6
3,940,362	+		LRK54_RS18050	0.12	-2.6
3,940,362	+		LRK54_RS18050	0.12	-1.3
3,940,362	+		LRK54_RS18050	0.12	-0.3
3,940,362	+		LRK54_RS18050	0.12	-0.9
3,940,362	+		LRK54_RS18050	0.12	-0.9
3,940,362	+		LRK54_RS18050	0.12	-2.0
3,940,362	+		LRK54_RS18050	0.12	-2.7
3,940,362	+		LRK54_RS18050	0.12	-0.3
3,940,362	+		LRK54_RS18050	0.12	-0.9
3,940,362	+		LRK54_RS18050	0.12	-0.3
3,940,363	-		LRK54_RS18050	0.12	-0.9
3,940,363	-		LRK54_RS18050	0.12	-1.6
3,940,363	-		LRK54_RS18050	0.12	-1.3
3,940,363	-		LRK54_RS18050	0.12	-0.3
3,940,363	-		LRK54_RS18050	0.12	+0.7
3,940,363	-		LRK54_RS18050	0.12	-0.3
3,940,363	-		LRK54_RS18050	0.12	-1.9
3,940,419	+		LRK54_RS18050	0.17	-1.6
3,940,419	+		LRK54_RS18050	0.17	-2.4
3,940,419	+		LRK54_RS18050	0.17	-1.3
3,940,419	+		LRK54_RS18050	0.17	+0.3
3,940,419	+		LRK54_RS18050	0.17	-2.7
3,940,419	+		LRK54_RS18050	0.17	-2.1
3,940,420	-		LRK54_RS18050	0.17	-2.1
3,940,420	-		LRK54_RS18050	0.17	-0.5
3,940,420	-		LRK54_RS18050	0.17	-1.5
3,940,420	-		LRK54_RS18050	0.17	-2.4
3,940,578	+		LRK54_RS18050	0.30	-0.3
3,940,578	+		LRK54_RS18050	0.30	-0.9
3,940,578	+		LRK54_RS18050	0.30	-2.2
3,940,578	+		LRK54_RS18050	0.30	-2.3
3,940,578	+		LRK54_RS18050	0.30	-2.9
3,940,578	+		LRK54_RS18050	0.30	-1.3
3,940,578	+		LRK54_RS18050	0.30	-2.6
3,940,578	+		LRK54_RS18050	0.30	-0.3
3,940,578	+		LRK54_RS18050	0.30	-0.9
3,940,578	+		LRK54_RS18050	0.30	-1.3
3,940,578	+		LRK54_RS18050	0.30	-1.3
3,940,578	+		LRK54_RS18050	0.30	-0.9
3,940,578	+		LRK54_RS18050	0.30	-1.3
3,940,578	+		LRK54_RS18050	0.30	+0.7
3,940,578	+		LRK54_RS18050	0.30	-1.3
3,940,578	+		LRK54_RS18050	0.30	-0.3
3,940,578	+		LRK54_RS18050	0.30	-1.9
3,940,578	+		LRK54_RS18050	0.30	-1.1
3,940,578	+		LRK54_RS18050	0.30	-2.4
3,940,578	+		LRK54_RS18050	0.30	-1.6
3,940,578	+		LRK54_RS18050	0.30	-2.3
3,940,578	+		LRK54_RS18050	0.30	-0.9
3,940,578	+		LRK54_RS18050	0.30	+0.7
3,940,578	+		LRK54_RS18050	0.30	-2.1
3,940,578	+		LRK54_RS18050	0.30	-2.6
3,940,578	+		LRK54_RS18050	0.30	+0.3
3,940,578	+		LRK54_RS18050	0.30	-3.0
3,940,578	+		LRK54_RS18050	0.30	-2.4
3,940,578	+		LRK54_RS18050	0.30	-0.3
3,940,578	+		LRK54_RS18050	0.30	-1.9
3,940,578	+		LRK54_RS18050	0.30	-3.4
3,940,578	+		LRK54_RS18050	0.30	-1.3
3,940,578	+		LRK54_RS18050	0.30	-2.9
3,940,578	+		LRK54_RS18050	0.30	-0.3
3,940,578	+		LRK54_RS18050	0.30	-1.3
3,940,579	-		LRK54_RS18050	0.30	-3.7
3,940,579	-		LRK54_RS18050	0.30	-1.9
3,940,579	-		LRK54_RS18050	0.30	+0.7
3,940,579	-		LRK54_RS18050	0.30	-1.6
3,940,579	-		LRK54_RS18050	0.30	-1.6
3,940,579	-		LRK54_RS18050	0.30	-0.3
3,940,579	-		LRK54_RS18050	0.30	-0.9
3,940,579	-		LRK54_RS18050	0.30	+1.5
3,940,579	-		LRK54_RS18050	0.30	-0.9
3,940,579	-		LRK54_RS18050	0.30	-2.1
3,940,579	-		LRK54_RS18050	0.30	-1.3
3,940,579	-		LRK54_RS18050	0.30	-1.3
3,940,579	-		LRK54_RS18050	0.30	-2.3
3,940,579	-		LRK54_RS18050	0.30	-0.9
3,940,579	-		LRK54_RS18050	0.30	-0.9
3,940,579	-		LRK54_RS18050	0.30	+0.1
3,940,579	-		LRK54_RS18050	0.30	+0.7
3,940,579	-		LRK54_RS18050	0.30	-0.3
3,940,579	-		LRK54_RS18050	0.30	-2.3
3,940,579	-		LRK54_RS18050	0.30	-1.6
3,940,579	-		LRK54_RS18050	0.30	-1.9
3,940,579	-		LRK54_RS18050	0.30	-3.0
3,940,579	-		LRK54_RS18050	0.30	-0.3
3,940,579	-		LRK54_RS18050	0.30	-0.9
3,940,680	+		LRK54_RS18050	0.39	-1.6
3,940,680	+		LRK54_RS18050	0.39	+0.7
3,940,680	+		LRK54_RS18050	0.39	-2.1
3,940,680	+		LRK54_RS18050	0.39	-2.7
3,940,680	+		LRK54_RS18050	0.39	-1.3
3,940,680	+		LRK54_RS18050	0.39	-1.6
3,940,680	+		LRK54_RS18050	0.39	-0.9
3,940,680	+		LRK54_RS18050	0.39	-2.6
3,940,680	+		LRK54_RS18050	0.39	-1.3
3,940,680	+		LRK54_RS18050	0.39	-1.3
3,940,680	+		LRK54_RS18050	0.39	-0.3
3,940,680	+		LRK54_RS18050	0.39	-0.3
3,940,681	-		LRK54_RS18050	0.39	+0.7
3,940,681	-		LRK54_RS18050	0.39	-0.3
3,940,681	-		LRK54_RS18050	0.39	-0.3
3,940,681	-		LRK54_RS18050	0.39	-1.3
3,940,681	-		LRK54_RS18050	0.39	-2.7
3,940,681	-		LRK54_RS18050	0.39	-1.9
3,940,776	+		LRK54_RS18050	0.47	-0.3
3,940,776	+		LRK54_RS18050	0.47	-3.0
3,940,776	+		LRK54_RS18050	0.47	-0.3
3,940,776	+		LRK54_RS18050	0.47	-1.9
3,940,777	-		LRK54_RS18050	0.47	-1.8
3,940,777	-		LRK54_RS18050	0.47	-1.3
3,940,777	-		LRK54_RS18050	0.47	-2.4
3,940,777	-		LRK54_RS18050	0.47	-0.9
3,940,777	-		LRK54_RS18050	0.47	-0.3
3,940,833	+		LRK54_RS18050	0.52	-1.9
3,940,833	+		LRK54_RS18050	0.52	+0.7
3,940,833	+		LRK54_RS18050	0.52	-1.2
3,940,833	+		LRK54_RS18050	0.52	+0.7
3,940,833	+		LRK54_RS18050	0.52	-2.1
3,940,833	+		LRK54_RS18050	0.52	-0.3
3,940,833	+		LRK54_RS18050	0.52	-1.3
3,940,833	+		LRK54_RS18050	0.52	-1.3
3,940,834	-		LRK54_RS18050	0.52	-1.9
3,940,834	-		LRK54_RS18050	0.52	-1.9
3,940,834	-		LRK54_RS18050	0.52	-1.6
3,940,834	-		LRK54_RS18050	0.52	-0.3
3,940,834	-		LRK54_RS18050	0.52	-0.4
3,940,834	-		LRK54_RS18050	0.52	-2.3
3,940,938	+		LRK54_RS18050	0.61	-0.9
3,940,938	+		LRK54_RS18050	0.61	-1.9
3,940,938	+		LRK54_RS18050	0.61	-1.3
3,940,938	+		LRK54_RS18050	0.61	-1.9
3,940,938	+		LRK54_RS18050	0.61	+0.7
3,940,938	+		LRK54_RS18050	0.61	-0.3
3,940,938	+		LRK54_RS18050	0.61	+1.7
3,940,938	+		LRK54_RS18050	0.61	-1.9
3,940,939	-		LRK54_RS18050	0.61	+0.7
3,940,939	-		LRK54_RS18050	0.61	-0.3
3,940,939	-		LRK54_RS18050	0.61	-2.1
3,940,939	-		LRK54_RS18050	0.61	-2.3
3,940,939	-		LRK54_RS18050	0.61	-2.9
3,940,939	-		LRK54_RS18050	0.61	-0.1
3,940,939	-		LRK54_RS18050	0.61	-3.1
3,940,939	-		LRK54_RS18050	0.61	-2.6
3,941,004	+		LRK54_RS18050	0.66	-2.3
3,941,004	+		LRK54_RS18050	0.66	-0.9
3,941,004	+		LRK54_RS18050	0.66	-1.1
3,941,004	+		LRK54_RS18050	0.66	-1.1
3,941,004	+		LRK54_RS18050	0.66	-1.6
3,941,004	+		LRK54_RS18050	0.66	-2.1
3,941,004	+		LRK54_RS18050	0.66	-3.4
3,941,004	+		LRK54_RS18050	0.66	-1.1
3,941,004	+		LRK54_RS18050	0.66	-0.9
3,941,004	+		LRK54_RS18050	0.66	-2.1
3,941,004	+		LRK54_RS18050	0.66	-1.9
3,941,004	+		LRK54_RS18050	0.66	-3.3
3,941,004	+		LRK54_RS18050	0.66	-2.4
3,941,004	+		LRK54_RS18050	0.66	-2.8
3,941,004	+		LRK54_RS18050	0.66	-0.9
3,941,004	+		LRK54_RS18050	0.66	-0.3
3,941,004	+		LRK54_RS18050	0.66	+0.7
3,941,004	+		LRK54_RS18050	0.66	-0.3
3,941,004	+		LRK54_RS18050	0.66	-0.9
3,941,004	+		LRK54_RS18050	0.66	-1.3
3,941,004	+		LRK54_RS18050	0.66	-0.9
3,941,004	+		LRK54_RS18050	0.66	-0.3
3,941,004	+		LRK54_RS18050	0.66	-2.3
3,941,004	+		LRK54_RS18050	0.66	-0.3
3,941,004	+		LRK54_RS18050	0.66	-2.9
3,941,004	+		LRK54_RS18050	0.66	+1.1
3,941,004	+		LRK54_RS18050	0.66	-0.3
3,941,004	+		LRK54_RS18050	0.66	+1.7
3,941,004	+		LRK54_RS18050	0.66	+0.7
3,941,004	+		LRK54_RS18050	0.66	-3.0
3,941,004	+		LRK54_RS18050	0.66	-0.9
3,941,004	+		LRK54_RS18050	0.66	-1.9
3,941,004	+		LRK54_RS18050	0.66	-2.6
3,941,004	+		LRK54_RS18050	0.66	-1.6
3,941,004	+		LRK54_RS18050	0.66	-0.9
3,941,004	+		LRK54_RS18050	0.66	-2.4
3,941,004	+		LRK54_RS18050	0.66	-2.7
3,941,004	+		LRK54_RS18050	0.66	-0.3
3,941,004	+		LRK54_RS18050	0.66	-1.9
3,941,004	+		LRK54_RS18050	0.66	-0.9
3,941,004	+		LRK54_RS18050	0.66	-1.3
3,941,004	+		LRK54_RS18050	0.66	-2.6
3,941,004	+		LRK54_RS18050	0.66	-1.6
3,941,004	+		LRK54_RS18050	0.66	-0.3
3,941,005	-		LRK54_RS18050	0.67	-1.9
3,941,005	-		LRK54_RS18050	0.67	-1.3
3,941,005	-		LRK54_RS18050	0.67	-2.3
3,941,005	-		LRK54_RS18050	0.67	+0.7
3,941,005	-		LRK54_RS18050	0.67	-1.3
3,941,005	-		LRK54_RS18050	0.67	-1.3
3,941,005	-		LRK54_RS18050	0.67	-0.3
3,941,005	-		LRK54_RS18050	0.67	+0.7
3,941,005	-		LRK54_RS18050	0.67	+0.7
3,941,005	-		LRK54_RS18050	0.67	-1.9
3,941,005	-		LRK54_RS18050	0.67	-0.6
3,941,005	-		LRK54_RS18050	0.67	-0.9
3,941,005	-		LRK54_RS18050	0.67	-0.3
3,941,005	-		LRK54_RS18050	0.67	-1.6
3,941,005	-		LRK54_RS18050	0.67	-0.3
3,941,005	-		LRK54_RS18050	0.67	-0.7
3,941,005	-		LRK54_RS18050	0.67	+0.1
3,941,005	-		LRK54_RS18050	0.67	-1.6
3,941,005	-		LRK54_RS18050	0.67	+0.1
3,941,005	-		LRK54_RS18050	0.67	-0.3
3,941,005	-		LRK54_RS18050	0.67	-1.3
3,941,005	-		LRK54_RS18050	0.67	-1.9
3,941,005	-		LRK54_RS18050	0.67	-0.3
3,941,005	-		LRK54_RS18050	0.67	-0.6
3,941,005	-		LRK54_RS18050	0.67	-0.3
3,941,005	-		LRK54_RS18050	0.67	-1.9
3,941,005	-		LRK54_RS18050	0.67	+0.7
3,941,005	-		LRK54_RS18050	0.67	-1.3
3,941,005	-		LRK54_RS18050	0.67	-0.3
3,941,005	-		LRK54_RS18050	0.67	-0.3
3,941,005	-		LRK54_RS18050	0.67	-2.1
3,941,103	+		LRK54_RS18050	0.75	-2.1
3,941,103	+		LRK54_RS18050	0.75	-1.6
3,941,104	-		LRK54_RS18050	0.75	-1.9
3,941,289	+				-0.9
3,941,289	+				-2.3
3,941,289	+				+1.2
3,941,289	+				+0.7
3,941,289	+				-1.3
3,941,289	+				-1.4
3,941,289	+				-2.3
3,941,289	+				+0.3
3,941,289	+				-0.3
3,941,289	+				-0.9
3,941,289	+				-2.6
3,941,289	+				-1.9
3,941,289	+				-0.1
3,941,289	+				-2.9
3,941,289	+				-1.3
3,941,289	+				-0.9
3,941,289	+				-2.1
3,941,289	+				-1.3
3,941,289	+				-2.1
3,941,290	-				-1.9
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3,941,290	-				-2.6
3,941,290	-				+0.7
3,941,290	-				-2.1
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3,941,290	-				+0.7
3,941,407	+				+0.1
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3,941,407	+				+1.4
3,941,407	+				+2.5
3,941,407	+				+1.7
3,941,407	+				+0.5
3,941,407	+				-1.9
3,941,407	+				+0.1
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3,941,407	+				-0.0
3,941,408	-				+1.7
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3,942,175	+		LRK54_RS18055	0.75	-0.7
3,942,175	+		LRK54_RS18055	0.75	-0.9
3,942,175	+		LRK54_RS18055	0.75	+0.7
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3,942,200	-		LRK54_RS18055	0.78	+0.4
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3,942,250	+		LRK54_RS18055	0.83	+2.7
3,942,250	+		LRK54_RS18055	0.83	+0.4
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3,942,250	+		LRK54_RS18055	0.83	-0.3
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3,942,251	-		LRK54_RS18055	0.83	+0.1
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3,942,251	-		LRK54_RS18055	0.83	+0.7
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3,942,252	+		LRK54_RS18055	0.83	+0.7
3,942,252	+		LRK54_RS18055	0.83	+0.1
3,942,253	-		LRK54_RS18055	0.83	+1.1
3,942,253	-		LRK54_RS18055	0.83	+1.7
3,942,253	-		LRK54_RS18055	0.83	-1.4
3,942,253	-		LRK54_RS18055	0.83	-2.1
3,942,327	+				+1.7
3,942,327	+				-0.9
3,942,327	+				+0.5
3,942,328	-				+1.1
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3,942,332	+				+1.7
3,942,333	-				-2.3
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3,942,340	+				+0.7
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3,942,341	-				+2.9
3,942,341	-				-0.7
3,942,341	-				-1.3
3,942,341	-				-1.1