Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS17990

Experiment: R2A with SpecU metal mix 1 X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with SpecU metal mix 1 X
3,926,296	+				-0.1
3,926,296	+				-0.4
3,926,296	+				+0.1
3,926,296	+				+1.0
3,926,296	+				+0.1
3,926,296	+				-0.0
3,926,296	+				+0.1
3,926,296	+				+0.6
3,926,296	+				+0.1
3,926,296	+				-0.5
3,926,296	+				-0.4
3,926,296	+				-0.3
3,926,296	+				+0.2
3,926,296	+				-1.1
3,926,296	+				+0.1
3,926,296	+				+0.5
3,926,297	-				+0.3
3,926,297	-				+0.2
3,926,297	-				+2.1
3,926,297	-				+0.3
3,926,297	-				+1.1
3,926,297	-				+0.5
3,926,297	-				+0.0
3,926,297	-				-1.3
3,926,297	-				+0.1
3,926,297	-				+1.6
3,926,297	-				-0.1
3,926,297	-				-1.3
3,926,297	-				-0.3
3,926,297	-				-0.1
3,926,297	-				+0.2
3,926,297	-				+0.3
3,926,297	-				+0.1
3,926,297	-				+0.1
3,926,297	-				+0.6
3,926,297	-				+0.5
3,926,297	-				-0.2
3,926,297	-				+0.4
3,926,297	-				+0.1
3,926,297	-				+1.5
3,926,297	-				+0.6
3,926,357	+				+0.7
3,926,357	+				+0.7
3,926,357	+				+0.7
3,926,357	+				+1.2
3,926,357	+				+1.1
3,926,357	+				-1.7
3,926,357	+				+1.5
3,926,358	-				-1.1
3,926,358	-				-0.6
3,926,358	-				-1.9
3,926,358	-				-0.6
3,926,358	-				-2.4
3,926,375	+				-1.1
3,926,376	-				-0.1
3,926,382	+				+0.9
3,926,382	+				+0.4
3,926,382	+				+1.7
3,926,382	+				-0.6
3,926,382	+				+0.4
3,926,382	+				+0.7
3,926,382	+				+0.7
3,926,382	+				-0.2
3,926,382	+				+0.8
3,926,382	+				+1.2
3,926,382	+				+1.7
3,926,382	+				+1.1
3,926,382	+				+0.4
3,926,382	+				+1.1
3,926,382	+				+0.1
3,926,382	+				+1.1
3,926,382	+				-0.9
3,926,382	+				+0.9
3,926,382	+				+1.5
3,926,382	+				+0.8
3,926,382	+				+1.0
3,926,382	+				-0.0
3,926,382	+				+0.4
3,926,382	+				+0.6
3,926,382	+				-1.3
3,926,382	+				-0.3
3,926,382	+				-0.0
3,926,382	+				+0.5
3,926,382	+				-1.2
3,926,382	+				+0.4
3,926,383	-				-1.3
3,926,383	-				-1.6
3,926,383	-				+1.3
3,926,383	-				+0.7
3,926,383	-				+0.5
3,926,383	-				+0.3
3,926,383	-				-0.3
3,926,383	-				+1.3
3,927,309	+				+1.0
3,927,309	+				-0.9
3,927,309	+				+2.1
3,927,309	+				-0.0
3,927,310	-				+0.5
3,927,310	-				+1.6
3,927,310	-				+1.3
3,927,419	+		LRK54_RS17990	0.24	+2.6
3,927,419	+		LRK54_RS17990	0.24	+0.7
3,927,420	-		LRK54_RS17990	0.24	+0.7
3,927,420	-		LRK54_RS17990	0.24	+0.7
3,927,420	-		LRK54_RS17990	0.24	+0.8
3,927,420	-		LRK54_RS17990	0.24	+0.7
3,927,420	-		LRK54_RS17990	0.24	+1.5
3,927,420	-		LRK54_RS17990	0.24	+1.1
3,927,420	-		LRK54_RS17990	0.24	+2.1
3,927,476	+		LRK54_RS17990	0.32	+0.7
3,927,476	+		LRK54_RS17990	0.32	+2.1
3,927,476	+		LRK54_RS17990	0.32	+2.8
3,927,476	+		LRK54_RS17990	0.32	+0.9
3,927,476	+		LRK54_RS17990	0.32	-0.7
3,927,476	+		LRK54_RS17990	0.32	+1.2
3,927,477	-		LRK54_RS17990	0.32	+0.3
3,927,477	-		LRK54_RS17990	0.32	-0.1
3,927,477	-		LRK54_RS17990	0.32	+0.9
3,927,477	-		LRK54_RS17990	0.32	+2.1
3,927,578	+		LRK54_RS17990	0.47	+2.1
3,927,578	+		LRK54_RS17990	0.47	+1.9
3,927,578	+		LRK54_RS17990	0.47	+1.5
3,927,578	+		LRK54_RS17990	0.47	+1.1
3,927,578	+		LRK54_RS17990	0.47	+2.4
3,927,578	+		LRK54_RS17990	0.47	+1.1
3,927,578	+		LRK54_RS17990	0.47	+0.7
3,927,578	+		LRK54_RS17990	0.47	+0.5
3,927,578	+		LRK54_RS17990	0.47	+0.4
3,927,578	+		LRK54_RS17990	0.47	+1.7
3,927,578	+		LRK54_RS17990	0.47	+1.1
3,927,578	+		LRK54_RS17990	0.47	+2.3
3,927,578	+		LRK54_RS17990	0.47	+2.5
3,927,578	+		LRK54_RS17990	0.47	+0.5
3,927,578	+		LRK54_RS17990	0.47	+0.9
3,927,578	+		LRK54_RS17990	0.47	+1.1
3,927,578	+		LRK54_RS17990	0.47	+1.0
3,927,578	+		LRK54_RS17990	0.47	+2.1
3,927,578	+		LRK54_RS17990	0.47	+1.0
3,927,578	+		LRK54_RS17990	0.47	+0.7
3,927,579	-		LRK54_RS17990	0.47	+0.6
3,927,579	-		LRK54_RS17990	0.47	+1.0
3,927,579	-		LRK54_RS17990	0.47	-1.1
3,927,579	-		LRK54_RS17990	0.47	-0.3
3,927,579	-		LRK54_RS17990	0.47	-0.2
3,927,579	-		LRK54_RS17990	0.47	-0.0
3,927,579	-		LRK54_RS17990	0.47	-2.6
3,927,579	-		LRK54_RS17990	0.47	-0.6
3,927,579	-		LRK54_RS17990	0.47	+1.4
3,927,579	-		LRK54_RS17990	0.47	+0.2
3,927,579	-		LRK54_RS17990	0.47	+1.6
3,927,579	-		LRK54_RS17990	0.47	+1.7
3,927,579	-		LRK54_RS17990	0.47	+1.2
3,927,579	-		LRK54_RS17990	0.47	+1.3
3,927,579	-		LRK54_RS17990	0.47	+1.5
3,927,579	-		LRK54_RS17990	0.47	+0.9
3,927,579	-		LRK54_RS17990	0.47	+0.1
3,927,579	-		LRK54_RS17990	0.47	+1.1
3,927,579	-		LRK54_RS17990	0.47	+1.1
3,927,579	-		LRK54_RS17990	0.47	+0.8
3,927,579	-		LRK54_RS17990	0.47	+1.5
3,927,579	-		LRK54_RS17990	0.47	+1.4
3,927,579	-		LRK54_RS17990	0.47	+3.3
3,927,579	-		LRK54_RS17990	0.47	+1.1
3,927,579	-		LRK54_RS17990	0.47	+1.7
3,927,615	+		LRK54_RS17990	0.52	+1.8
3,927,616	-		LRK54_RS17990	0.52	+1.1
3,927,782	+		LRK54_RS17990	0.76	+0.4
3,927,783	-		LRK54_RS17990	0.76	+1.1
3,927,783	-		LRK54_RS17990	0.76	+0.7
3,927,783	-		LRK54_RS17990	0.76	-1.6
3,927,783	-		LRK54_RS17990	0.76	+1.2
3,927,806	+		LRK54_RS17990	0.79	+1.1
3,927,901	-				+1.4
3,927,934	+				+1.2
3,927,934	+				+0.1
3,927,934	+				+0.8
3,927,934	+				+0.7
3,927,934	+				+0.5
3,927,934	+				-0.0
3,927,934	+				+0.4
3,927,934	+				+0.7
3,927,935	-				+1.1
3,927,935	-				+1.0
3,927,935	-				+0.7
3,927,935	-				+1.7
3,927,979	+				+1.1
3,927,979	+				-1.3
3,927,979	+				-1.1
3,927,979	+				+0.6
3,927,979	+				+1.1
3,927,979	+				+2.6
3,927,979	+				+0.9
3,927,979	+				+1.1
3,927,979	+				-1.2
3,927,979	+				-2.1
3,927,979	+				+1.6
3,927,979	+				+0.5
3,927,980	-				+1.4
3,927,980	-				+0.9
3,927,980	-				-0.0
3,927,980	-				+1.2
3,927,980	-				-1.3
3,927,980	-				+0.2
3,927,980	-				-2.4
3,927,980	-				+0.2
3,927,980	-				+3.2
3,927,980	-				-0.3
3,927,980	-				+0.3
3,927,980	-				+1.5
3,927,980	-				-1.9
3,927,980	-				-0.3
3,927,980	-				+0.9
3,927,980	-				+1.1
3,927,980	-				+1.1
3,927,980	-				+0.7
3,927,984	+				+1.0
3,927,984	+				-2.1
3,927,984	+				+0.1
3,927,984	+				-2.8
3,927,984	+				-0.3
3,927,984	+				-0.9
3,927,984	+				-1.1
3,927,984	+				-0.3
3,927,985	-				-2.3
3,928,066	+				+0.7
3,928,066	+				-0.6
3,928,121	+				+3.1