Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS17565

Experiment: R2A with SpecU metal mix 1 X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with SpecU metal mix 1 X
3,839,643	-		LRK54_RS17560	0.58	-0.5
3,839,693	+		LRK54_RS17560	0.62	-0.3
3,839,694	-		LRK54_RS17560	0.62	-0.6
3,839,694	-		LRK54_RS17560	0.62	-0.6
3,839,897	+		LRK54_RS17560	0.81	-1.1
3,839,897	+		LRK54_RS17560	0.81	-1.4
3,839,897	+		LRK54_RS17560	0.81	-1.5
3,839,897	+		LRK54_RS17560	0.81	-1.8
3,839,897	+		LRK54_RS17560	0.81	-3.1
3,839,898	-		LRK54_RS17560	0.81	+0.2
3,839,898	-		LRK54_RS17560	0.81	-0.5
3,839,898	-		LRK54_RS17560	0.81	-1.6
3,839,898	-		LRK54_RS17560	0.81	-1.9
3,839,898	-		LRK54_RS17560	0.81	-0.6
3,839,898	-		LRK54_RS17560	0.81	-0.9
3,839,898	-		LRK54_RS17560	0.81	-0.9
3,839,898	-		LRK54_RS17560	0.81	-1.4
3,840,184	+				-1.6
3,840,184	+				-1.8
3,840,184	+				-1.2
3,840,185	-				-1.6
3,840,185	-				-1.0
3,840,261	+		LRK54_RS17565	0.13	-0.6
3,840,261	+		LRK54_RS17565	0.13	-1.1
3,840,261	+		LRK54_RS17565	0.13	-1.0
3,840,261	+		LRK54_RS17565	0.13	-2.0
3,840,261	+		LRK54_RS17565	0.13	-0.6
3,840,261	+		LRK54_RS17565	0.13	-2.4
3,840,261	+		LRK54_RS17565	0.13	-0.3
3,840,261	+		LRK54_RS17565	0.13	-0.5
3,840,261	+		LRK54_RS17565	0.13	-1.1
3,840,262	-		LRK54_RS17565	0.13	-1.3
3,840,262	-		LRK54_RS17565	0.13	-2.6
3,840,262	-		LRK54_RS17565	0.13	-0.8
3,840,262	-		LRK54_RS17565	0.13	+0.3
3,840,262	-		LRK54_RS17565	0.13	-1.1
3,840,262	-		LRK54_RS17565	0.13	-1.4
3,840,262	-		LRK54_RS17565	0.13	+0.7
3,840,262	-		LRK54_RS17565	0.13	-2.0
3,840,262	-		LRK54_RS17565	0.13	+0.5
3,840,262	-		LRK54_RS17565	0.13	-1.4
3,840,268	+		LRK54_RS17565	0.14	-1.6
3,840,268	+		LRK54_RS17565	0.14	-2.5
3,840,269	-		LRK54_RS17565	0.14	-1.6
3,840,269	-		LRK54_RS17565	0.14	-1.3
3,840,269	-		LRK54_RS17565	0.14	-0.0
3,840,309	+		LRK54_RS17565	0.18	-1.6
3,840,309	+		LRK54_RS17565	0.18	+1.1
3,840,309	+		LRK54_RS17565	0.18	-2.4
3,840,309	+		LRK54_RS17565	0.18	+0.4
3,840,309	+		LRK54_RS17565	0.18	-0.9
3,840,309	+		LRK54_RS17565	0.18	-2.3
3,840,309	+		LRK54_RS17565	0.18	+0.7
3,840,309	+		LRK54_RS17565	0.18	+1.3
3,840,310	-		LRK54_RS17565	0.18	-0.7
3,840,310	-		LRK54_RS17565	0.18	-1.1
3,840,310	-		LRK54_RS17565	0.18	-1.1
3,840,310	-		LRK54_RS17565	0.18	-2.4
3,840,310	-		LRK54_RS17565	0.18	-0.5
3,840,310	-		LRK54_RS17565	0.18	-1.0
3,840,310	-		LRK54_RS17565	0.18	+0.9
3,840,310	-		LRK54_RS17565	0.18	-0.5
3,840,312	+		LRK54_RS17565	0.18	-1.4
3,840,386	-		LRK54_RS17565	0.24	-1.6
3,840,497	+		LRK54_RS17565	0.34	-1.4
3,840,564	+		LRK54_RS17565	0.39	-2.5
3,840,564	+		LRK54_RS17565	0.39	-1.4
3,840,565	-		LRK54_RS17565	0.40	-3.1
3,840,565	-		LRK54_RS17565	0.40	-1.2
3,840,565	-		LRK54_RS17565	0.40	-1.7
3,840,565	-		LRK54_RS17565	0.40	+0.7
3,840,565	-		LRK54_RS17565	0.40	-2.6
3,840,698	+		LRK54_RS17565	0.51	-1.0
3,840,698	+		LRK54_RS17565	0.51	-0.3
3,840,698	+		LRK54_RS17565	0.51	-1.6
3,840,698	+		LRK54_RS17565	0.51	-0.9
3,840,698	+		LRK54_RS17565	0.51	-0.9
3,840,699	-		LRK54_RS17565	0.51	-0.9
3,840,699	-		LRK54_RS17565	0.51	-1.0
3,840,699	-		LRK54_RS17565	0.51	-1.6
3,840,699	-		LRK54_RS17565	0.51	-0.5
3,840,699	-		LRK54_RS17565	0.51	-2.1
3,840,722	+		LRK54_RS17565	0.53	-1.1
3,840,722	+		LRK54_RS17565	0.53	-2.7
3,840,722	+		LRK54_RS17565	0.53	-0.5
3,840,722	+		LRK54_RS17565	0.53	-1.9
3,840,722	+		LRK54_RS17565	0.53	-2.9
3,840,722	+		LRK54_RS17565	0.53	-1.3
3,840,722	+		LRK54_RS17565	0.53	-0.9
3,840,722	+		LRK54_RS17565	0.53	-1.5
3,840,722	+		LRK54_RS17565	0.53	-0.4
3,840,722	+		LRK54_RS17565	0.53	-1.6
3,840,722	+		LRK54_RS17565	0.53	-0.6
3,840,722	+		LRK54_RS17565	0.53	+0.7
3,840,722	+		LRK54_RS17565	0.53	-1.6
3,840,722	+		LRK54_RS17565	0.53	-0.5
3,840,722	+		LRK54_RS17565	0.53	+0.5
3,840,722	+		LRK54_RS17565	0.53	-0.3
3,840,722	+		LRK54_RS17565	0.53	-0.6
3,840,722	+		LRK54_RS17565	0.53	-2.0
3,840,722	+		LRK54_RS17565	0.53	-1.1
3,840,722	+		LRK54_RS17565	0.53	-1.1
3,840,722	+		LRK54_RS17565	0.53	-1.6
3,840,722	+		LRK54_RS17565	0.53	-1.1
3,840,722	+		LRK54_RS17565	0.53	-1.5
3,840,722	+		LRK54_RS17565	0.53	+0.7
3,840,723	-		LRK54_RS17565	0.53	-0.9
3,840,723	-		LRK54_RS17565	0.53	-1.9
3,840,723	-		LRK54_RS17565	0.53	-0.9
3,840,723	-		LRK54_RS17565	0.53	-1.3
3,840,723	-		LRK54_RS17565	0.53	-2.0
3,840,723	-		LRK54_RS17565	0.53	-1.0
3,840,723	-		LRK54_RS17565	0.53	-0.1
3,840,723	-		LRK54_RS17565	0.53	-2.9
3,840,723	-		LRK54_RS17565	0.53	-3.0
3,840,723	-		LRK54_RS17565	0.53	-0.7
3,840,723	-		LRK54_RS17565	0.53	-1.7
3,840,723	-		LRK54_RS17565	0.53	-2.2
3,840,723	-		LRK54_RS17565	0.53	-1.9
3,840,723	-		LRK54_RS17565	0.53	-1.9
3,840,723	-		LRK54_RS17565	0.53	-1.9
3,840,723	-		LRK54_RS17565	0.53	-1.5
3,840,723	-		LRK54_RS17565	0.53	-0.9
3,840,723	-		LRK54_RS17565	0.53	-0.5
3,840,723	-		LRK54_RS17565	0.53	-0.6
3,840,723	-		LRK54_RS17565	0.53	-2.0
3,840,723	-		LRK54_RS17565	0.53	-0.2
3,840,723	-		LRK54_RS17565	0.53	-0.9
3,840,723	-		LRK54_RS17565	0.53	-0.3
3,840,723	-		LRK54_RS17565	0.53	-0.8
3,840,723	-		LRK54_RS17565	0.53	-0.9
3,840,723	-		LRK54_RS17565	0.53	-1.3
3,840,723	-		LRK54_RS17565	0.53	-3.3
3,840,723	-		LRK54_RS17565	0.53	+0.7
3,840,723	-		LRK54_RS17565	0.53	+1.2
3,840,869	+		LRK54_RS17565	0.66	+0.7
3,840,869	+		LRK54_RS17565	0.66	-0.1
3,840,869	+		LRK54_RS17565	0.66	-1.3
3,840,869	+		LRK54_RS17565	0.66	-0.3
3,840,869	+		LRK54_RS17565	0.66	-0.7
3,840,869	+		LRK54_RS17565	0.66	-1.2
3,840,869	+		LRK54_RS17565	0.66	-2.0
3,840,869	+		LRK54_RS17565	0.66	-1.2
3,840,869	+		LRK54_RS17565	0.66	+1.3
3,840,869	+		LRK54_RS17565	0.66	-1.1
3,840,870	-		LRK54_RS17565	0.66	+0.1
3,840,870	-		LRK54_RS17565	0.66	-0.3
3,840,870	-		LRK54_RS17565	0.66	-0.6
3,840,870	-		LRK54_RS17565	0.66	-0.3
3,840,870	-		LRK54_RS17565	0.66	-1.4
3,840,870	-		LRK54_RS17565	0.66	-1.1
3,841,025	+		LRK54_RS17565	0.79	-1.3
3,841,025	+		LRK54_RS17565	0.79	-1.3
3,841,026	-		LRK54_RS17565	0.79	-2.0
3,841,027	+		LRK54_RS17565	0.79	-2.9
3,841,027	+		LRK54_RS17565	0.79	-1.1
3,841,027	+		LRK54_RS17565	0.79	-3.3
3,841,027	+		LRK54_RS17565	0.79	-0.6
3,841,028	-		LRK54_RS17565	0.79	-2.3
3,841,028	-		LRK54_RS17565	0.79	-1.4
3,841,028	-		LRK54_RS17565	0.79	-0.6
3,841,028	-		LRK54_RS17565	0.79	-0.5
3,841,171	+				-0.3
3,841,171	+				-1.3
3,841,171	+				-0.7
3,841,171	+				-2.4
3,841,171	+				+0.7
3,841,172	-				-2.2
3,841,172	-				-1.4
3,841,172	-				-1.7
3,841,172	-				-0.5
3,841,172	-				+0.1
3,841,172	-				-1.2
3,841,172	-				+0.1
3,841,172	-				-1.0
3,841,172	-				-0.6
3,841,172	-				-2.6
3,841,172	-				-1.7
3,841,259	+				-0.3
3,841,259	+				-0.0
3,841,259	+				-0.3
3,841,259	+				-1.7
3,841,259	+				-1.3
3,841,260	-				-1.6
3,841,260	-				-0.6
3,841,315	-				-0.9
3,841,353	+				-1.7
3,841,354	-				+0.1
3,841,363	+				+0.9
3,841,363	+				-1.6
3,841,364	-				-3.2
3,841,468	+				-0.7
3,841,881	+				-0.4
3,841,881	+				+0.3
3,841,882	-				+0.2
3,841,882	-				+1.1
3,841,901	-				-0.6
3,841,901	-				-0.1
3,842,056	+		LRK54_RS17575	0.25	-0.6
3,842,056	+		LRK54_RS17575	0.25	-0.3
3,842,056	+		LRK54_RS17575	0.25	-0.1
3,842,056	+		LRK54_RS17575	0.25	-0.3
3,842,057	-		LRK54_RS17575	0.25	+0.6
3,842,057	-		LRK54_RS17575	0.25	-0.1
3,842,057	-		LRK54_RS17575	0.25	+0.6
3,842,118	+		LRK54_RS17575	0.43	-0.9
3,842,118	+		LRK54_RS17575	0.43	-0.4
3,842,118	+		LRK54_RS17575	0.43	-1.1
3,842,118	+		LRK54_RS17575	0.43	-0.2
3,842,118	+		LRK54_RS17575	0.43	-0.8
3,842,118	+		LRK54_RS17575	0.43	+0.7
3,842,118	+		LRK54_RS17575	0.43	+2.5
3,842,118	+		LRK54_RS17575	0.43	-0.1
3,842,118	+		LRK54_RS17575	0.43	-0.3
3,842,119	-		LRK54_RS17575	0.44	-1.0
3,842,119	-		LRK54_RS17575	0.44	-1.3
3,842,119	-		LRK54_RS17575	0.44	-0.3
3,842,119	-		LRK54_RS17575	0.44	+0.3
3,842,119	-		LRK54_RS17575	0.44	-0.7
3,842,167	+		LRK54_RS17575	0.58	+0.1
3,842,226	+		LRK54_RS17575	0.75	-0.0
3,842,226	+		LRK54_RS17575	0.75	+1.0
3,842,226	+		LRK54_RS17575	0.75	+0.7
3,842,226	+		LRK54_RS17575	0.75	+0.0
3,842,226	+		LRK54_RS17575	0.75	+0.5
3,842,226	+		LRK54_RS17575	0.75	-0.7
3,842,226	+		LRK54_RS17575	0.75	+1.3
3,842,226	+		LRK54_RS17575	0.75	+0.1
3,842,226	+		LRK54_RS17575	0.75	+0.9
3,842,226	+		LRK54_RS17575	0.75	+1.9
3,842,226	+		LRK54_RS17575	0.75	-0.1
3,842,227	-		LRK54_RS17575	0.75	-1.7
3,842,227	-		LRK54_RS17575	0.75	-0.1
3,842,230	+		LRK54_RS17575	0.76	-0.3
3,842,230	+		LRK54_RS17575	0.76	+0.4
3,842,230	+		LRK54_RS17575	0.76	+0.1
3,842,230	+		LRK54_RS17575	0.76	+0.4
3,842,230	+		LRK54_RS17575	0.76	+0.8
3,842,230	+		LRK54_RS17575	0.76	+2.1
3,842,230	+		LRK54_RS17575	0.76	+0.7
3,842,231	-		LRK54_RS17575	0.76	+0.7
3,842,231	-		LRK54_RS17575	0.76	-1.4
3,842,231	-		LRK54_RS17575	0.76	-0.3
3,842,231	-		LRK54_RS17575	0.76	-0.5
3,842,231	-		LRK54_RS17575	0.76	+0.7
3,842,231	-		LRK54_RS17575	0.76	-0.0
3,842,231	-		LRK54_RS17575	0.76	-0.6
3,842,231	-		LRK54_RS17575	0.76	-0.3
3,842,231	-		LRK54_RS17575	0.76	+0.7
3,842,231	-		LRK54_RS17575	0.76	-0.9
3,842,231	-		LRK54_RS17575	0.76	+1.7
3,842,231	-		LRK54_RS17575	0.76	-0.1
3,842,231	-		LRK54_RS17575	0.76	-0.9