Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS17270

Experiment: R2A with SpecU metal mix 1 X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with SpecU metal mix 1 X
3,771,824	+		LRK54_RS17265	0.14	-0.8
3,771,824	+		LRK54_RS17265	0.14	+1.5
3,771,824	+		LRK54_RS17265	0.14	-0.2
3,771,824	+		LRK54_RS17265	0.14	-0.8
3,771,824	+		LRK54_RS17265	0.14	-0.4
3,771,824	+		LRK54_RS17265	0.14	-0.6
3,771,825	-		LRK54_RS17265	0.14	+0.2
3,771,825	-		LRK54_RS17265	0.14	-0.6
3,771,825	-		LRK54_RS17265	0.14	-0.5
3,771,825	-		LRK54_RS17265	0.14	+0.0
3,771,869	+		LRK54_RS17265	0.18	+1.7
3,771,869	+		LRK54_RS17265	0.18	-0.5
3,771,870	-		LRK54_RS17265	0.18	+1.3
3,771,870	-		LRK54_RS17265	0.18	-1.0
3,771,956	+		LRK54_RS17265	0.26	-0.8
3,771,956	+		LRK54_RS17265	0.26	+0.9
3,771,956	+		LRK54_RS17265	0.26	+0.2
3,771,956	+		LRK54_RS17265	0.26	+0.0
3,771,956	+		LRK54_RS17265	0.26	+2.0
3,771,956	+		LRK54_RS17265	0.26	+1.3
3,771,956	+		LRK54_RS17265	0.26	+0.2
3,771,956	+		LRK54_RS17265	0.26	+0.2
3,771,956	+		LRK54_RS17265	0.26	-1.6
3,771,956	+		LRK54_RS17265	0.26	-0.1
3,771,956	+		LRK54_RS17265	0.26	+0.2
3,771,956	+		LRK54_RS17265	0.26	-0.3
3,771,956	+		LRK54_RS17265	0.26	-1.4
3,771,957	-		LRK54_RS17265	0.26	+1.0
3,771,957	-		LRK54_RS17265	0.26	-0.8
3,771,957	-		LRK54_RS17265	0.26	-0.0
3,771,957	-		LRK54_RS17265	0.26	-0.6
3,771,957	-		LRK54_RS17265	0.26	-1.5
3,771,957	-		LRK54_RS17265	0.26	-0.7
3,772,325	+		LRK54_RS17265	0.61	-0.0
3,772,325	+		LRK54_RS17265	0.61	+0.8
3,772,325	+		LRK54_RS17265	0.61	+0.8
3,772,325	+		LRK54_RS17265	0.61	+0.3
3,772,325	+		LRK54_RS17265	0.61	+0.2
3,772,325	+		LRK54_RS17265	0.61	-0.4
3,772,325	+		LRK54_RS17265	0.61	-0.8
3,772,325	+		LRK54_RS17265	0.61	+0.7
3,772,325	+		LRK54_RS17265	0.61	+0.4
3,772,325	+		LRK54_RS17265	0.61	+0.3
3,772,325	+		LRK54_RS17265	0.61	+0.3
3,772,325	+		LRK54_RS17265	0.61	+1.1
3,772,325	+		LRK54_RS17265	0.61	-0.3
3,772,325	+		LRK54_RS17265	0.61	-2.4
3,772,325	+		LRK54_RS17265	0.61	+2.3
3,772,325	+		LRK54_RS17265	0.61	-0.5
3,772,325	+		LRK54_RS17265	0.61	+0.4
3,772,325	+		LRK54_RS17265	0.61	-0.7
3,772,325	+		LRK54_RS17265	0.61	-1.6
3,772,325	+		LRK54_RS17265	0.61	-0.8
3,772,325	+		LRK54_RS17265	0.61	-0.4
3,772,325	+		LRK54_RS17265	0.61	-0.8
3,772,325	+		LRK54_RS17265	0.61	+0.7
3,772,325	+		LRK54_RS17265	0.61	+0.3
3,772,325	+		LRK54_RS17265	0.61	-0.3
3,772,325	+		LRK54_RS17265	0.61	+0.2
3,772,325	+		LRK54_RS17265	0.61	+0.5
3,772,325	+		LRK54_RS17265	0.61	-2.4
3,772,325	+		LRK54_RS17265	0.61	+1.5
3,772,325	+		LRK54_RS17265	0.61	+0.1
3,772,325	+		LRK54_RS17265	0.61	-1.0
3,772,325	+		LRK54_RS17265	0.61	-1.3
3,772,325	+		LRK54_RS17265	0.61	-0.1
3,772,326	-		LRK54_RS17265	0.61	+0.7
3,772,326	-		LRK54_RS17265	0.61	+0.7
3,772,326	-		LRK54_RS17265	0.61	+0.2
3,772,326	-		LRK54_RS17265	0.61	-0.6
3,772,326	-		LRK54_RS17265	0.61	-1.1
3,772,326	-		LRK54_RS17265	0.61	+0.9
3,772,326	-		LRK54_RS17265	0.61	-0.2
3,772,326	-		LRK54_RS17265	0.61	-0.6
3,772,326	-		LRK54_RS17265	0.61	-0.8
3,772,326	-		LRK54_RS17265	0.61	-0.2
3,772,326	-		LRK54_RS17265	0.61	-0.3
3,772,326	-		LRK54_RS17265	0.61	+0.1
3,772,326	-		LRK54_RS17265	0.61	+1.3
3,772,326	-		LRK54_RS17265	0.61	-1.0
3,772,326	-		LRK54_RS17265	0.61	+0.6
3,772,326	-		LRK54_RS17265	0.61	-0.8
3,772,326	-		LRK54_RS17265	0.61	+0.7
3,772,326	-		LRK54_RS17265	0.61	-0.3
3,772,326	-		LRK54_RS17265	0.61	+0.2
3,772,326	-		LRK54_RS17265	0.61	-0.5
3,772,326	-		LRK54_RS17265	0.61	-0.5
3,772,326	-		LRK54_RS17265	0.61	+0.4
3,772,326	-		LRK54_RS17265	0.61	-1.4
3,772,326	-		LRK54_RS17265	0.61	-0.8
3,772,326	-		LRK54_RS17265	0.61	+0.3
3,772,326	-		LRK54_RS17265	0.61	+0.5
3,772,331	+		LRK54_RS17265	0.61	-1.1
3,772,331	+		LRK54_RS17265	0.61	+0.9
3,772,331	+		LRK54_RS17265	0.61	+0.3
3,772,331	+		LRK54_RS17265	0.61	-0.3
3,772,331	+		LRK54_RS17265	0.61	+1.1
3,772,331	+		LRK54_RS17265	0.61	+1.1
3,772,331	+		LRK54_RS17265	0.61	+0.9
3,772,331	+		LRK54_RS17265	0.61	-0.3
3,772,332	-		LRK54_RS17265	0.62	-1.8
3,772,332	-		LRK54_RS17265	0.62	+0.2
3,772,332	-		LRK54_RS17265	0.62	-0.5
3,772,332	-		LRK54_RS17265	0.62	+0.4
3,772,332	-		LRK54_RS17265	0.62	+1.1
3,772,332	-		LRK54_RS17265	0.62	-0.0
3,772,332	-		LRK54_RS17265	0.62	+0.3
3,772,532	+		LRK54_RS17265	0.80	-0.3
3,772,532	+		LRK54_RS17265	0.80	+0.3
3,772,532	+		LRK54_RS17265	0.80	+0.7
3,772,532	+		LRK54_RS17265	0.80	+0.6
3,772,532	+		LRK54_RS17265	0.80	-0.0
3,772,532	+		LRK54_RS17265	0.80	-0.0
3,772,532	+		LRK54_RS17265	0.80	-0.3
3,772,532	+		LRK54_RS17265	0.80	-2.3
3,772,532	+		LRK54_RS17265	0.80	-0.3
3,772,532	+		LRK54_RS17265	0.80	-0.2
3,772,532	+		LRK54_RS17265	0.80	+1.3
3,772,532	+		LRK54_RS17265	0.80	+0.2
3,772,532	+		LRK54_RS17265	0.80	-0.3
3,772,532	+		LRK54_RS17265	0.80	-3.3
3,772,532	+		LRK54_RS17265	0.80	+0.4
3,772,532	+		LRK54_RS17265	0.80	+1.3
3,772,532	+		LRK54_RS17265	0.80	-0.5
3,772,532	+		LRK54_RS17265	0.80	+1.2
3,772,532	+		LRK54_RS17265	0.80	-1.1
3,772,532	+		LRK54_RS17265	0.80	+0.5
3,772,533	-		LRK54_RS17265	0.80	+0.7
3,772,533	-		LRK54_RS17265	0.80	-1.3
3,772,533	-		LRK54_RS17265	0.80	+0.2
3,772,533	-		LRK54_RS17265	0.80	-0.3
3,772,533	-		LRK54_RS17265	0.80	+0.2
3,772,533	-		LRK54_RS17265	0.80	-0.0
3,772,533	-		LRK54_RS17265	0.80	+0.3
3,772,533	-		LRK54_RS17265	0.80	-0.4
3,772,533	-		LRK54_RS17265	0.80	+0.7
3,772,533	-		LRK54_RS17265	0.80	+1.1
3,772,533	-		LRK54_RS17265	0.80	-0.5
3,772,533	-		LRK54_RS17265	0.80	-0.7
3,772,533	-		LRK54_RS17265	0.80	+0.8
3,772,533	-		LRK54_RS17265	0.80	-1.6
3,772,533	-		LRK54_RS17265	0.80	+1.0
3,772,533	-		LRK54_RS17265	0.80	+0.5
3,772,533	-		LRK54_RS17265	0.80	+0.6
3,772,533	-		LRK54_RS17265	0.80	+0.8
3,772,628	+		LRK54_RS17265	0.89	+0.1
3,772,628	+		LRK54_RS17265	0.89	+0.2
3,772,628	+		LRK54_RS17265	0.89	-1.3
3,772,628	+		LRK54_RS17265	0.89	-0.4
3,772,628	+		LRK54_RS17265	0.89	-0.8
3,772,628	+		LRK54_RS17265	0.89	+0.7
3,772,628	+		LRK54_RS17265	0.89	-0.1
3,772,628	+		LRK54_RS17265	0.89	-1.3
3,772,629	-		LRK54_RS17265	0.89	-1.8
3,772,629	-		LRK54_RS17265	0.89	+0.1
3,772,629	-		LRK54_RS17265	0.89	-0.1
3,772,629	-		LRK54_RS17265	0.89	-1.1
3,772,629	-		LRK54_RS17265	0.89	-1.3
3,772,629	-		LRK54_RS17265	0.89	-0.1
3,772,629	-		LRK54_RS17265	0.89	-0.4
3,772,629	-		LRK54_RS17265	0.89	-0.8
3,772,681	+				-0.3
3,772,682	-				-0.7
3,772,682	-				+0.5
3,772,682	-				+0.5
3,772,732	+				+1.2
3,772,732	+				-0.3
3,772,732	+				-1.8
3,772,732	+				+0.2
3,772,732	+				+0.3
3,772,732	+				-0.4
3,772,732	+				+0.5
3,772,732	+				+1.3
3,772,732	+				-0.6
3,772,732	+				+0.3
3,772,732	+				+0.7
3,772,732	+				+0.3
3,772,732	+				-0.2
3,772,732	+				+0.6
3,772,732	+				-0.3
3,772,732	+				+2.1
3,772,732	+				+0.7
3,772,732	+				-0.9
3,772,732	+				+0.2
3,772,732	+				+0.5
3,772,732	+				-0.5
3,772,732	+				-0.8
3,772,732	+				-0.6
3,772,732	+				-0.0
3,772,732	+				+1.1
3,772,732	+				+0.1
3,772,732	+				+0.5
3,772,732	+				+1.4
3,772,732	+				-0.6
3,772,732	+				-1.3
3,772,732	+				+0.4
3,772,732	+				+0.6
3,772,732	+				-1.1
3,772,732	+				-2.7
3,772,732	+				+0.1
3,772,732	+				+0.4
3,772,732	+				+0.2
3,772,732	+				+0.2
3,772,733	-				-0.3
3,772,733	-				-0.3
3,772,733	-				+0.4
3,772,733	-				+0.3
3,772,733	-				+1.4
3,772,733	-				+0.3
3,772,733	-				-0.4
3,772,733	-				+1.0
3,772,733	-				-0.0
3,772,733	-				-0.3
3,772,733	-				+0.4
3,772,733	-				+1.0
3,772,733	-				-0.2
3,772,733	-				+1.6
3,772,733	-				-2.4
3,772,733	-				-2.1
3,772,733	-				-0.0
3,772,733	-				+0.2
3,772,733	-				-0.8
3,772,733	-				+0.0
3,772,733	-				+2.3
3,772,733	-				+0.2
3,772,733	-				-0.5
3,772,733	-				+1.3
3,772,733	-				+0.7
3,772,733	-				+0.4
3,772,733	-				-0.3
3,772,733	-				-0.3
3,772,733	-				+0.3
3,772,733	-				-0.8
3,772,733	-				-1.4
3,772,733	-				-0.8
3,772,733	-				+0.6
3,772,733	-				-0.8
3,772,733	-				-0.6
3,772,733	-				+0.6
3,772,733	-				-0.5
3,772,877	-				-1.3
3,772,877	-				-0.8
3,773,905	+		LRK54_RS17270	0.49	+0.7
3,773,906	-		LRK54_RS17270	0.49	+0.7
3,773,935	+		LRK54_RS17270	0.50	+0.7
3,773,935	+		LRK54_RS17270	0.50	-1.6
3,773,935	+		LRK54_RS17270	0.50	-0.3
3,773,936	-		LRK54_RS17270	0.50	-1.8
3,774,094	+		LRK54_RS17270	0.57	-1.6
3,774,094	+		LRK54_RS17270	0.57	-0.3
3,774,094	+		LRK54_RS17270	0.57	-0.8
3,774,095	-		LRK54_RS17270	0.57	-0.3
3,774,095	-		LRK54_RS17270	0.57	-0.8
3,774,160	+		LRK54_RS17270	0.60	+0.2
3,774,161	-		LRK54_RS17270	0.60	-2.3
3,774,161	-		LRK54_RS17270	0.60	+0.7
3,774,161	-		LRK54_RS17270	0.60	+0.7
3,774,169	-		LRK54_RS17270	0.60	-1.6
3,774,257	-		LRK54_RS17270	0.64	-2.3
3,774,412	+		LRK54_RS17270	0.71	+0.7
3,774,412	+		LRK54_RS17270	0.71	+1.3
3,774,412	+		LRK54_RS17270	0.71	-0.3
3,774,412	+		LRK54_RS17270	0.71	-1.8
3,774,412	+		LRK54_RS17270	0.71	-1.3
3,774,413	-		LRK54_RS17270	0.71	-1.3
3,774,413	-		LRK54_RS17270	0.71	-1.3
3,774,413	-		LRK54_RS17270	0.71	+0.7
3,774,685	+		LRK54_RS17270	0.82	-0.8
3,774,685	+		LRK54_RS17270	0.82	-1.8
3,774,685	+		LRK54_RS17270	0.82	-0.3
3,774,685	+		LRK54_RS17270	0.82	-0.3
3,774,686	-		LRK54_RS17270	0.82	-0.5
3,774,904	+				-0.3
3,774,904	+				+0.7
3,774,905	-				-1.3
3,774,982	+				-0.8
3,774,983	-				+0.7
3,774,983	-				+0.7
3,775,137	+				-0.1
3,775,137	+				-0.2
3,775,137	+				-1.3
3,775,137	+				+0.2
3,775,137	+				-0.6
3,775,137	+				+0.4
3,775,138	-				+0.2
3,775,138	-				+0.1
3,775,138	-				+0.6
3,775,138	-				-0.3
3,775,138	-				+0.2
3,775,138	-				+0.2
3,775,140	-				-0.0
3,775,169	+				+0.1
3,775,169	+				-2.3
3,775,169	+				-0.2
3,775,169	+				+0.8
3,775,169	+				-1.3
3,775,169	+				-0.2
3,775,169	+				+0.6
3,775,169	+				-0.3
3,775,169	+				+0.6
3,775,169	+				+0.3
3,775,169	+				+0.4
3,775,169	+				-0.3
3,775,170	-				-0.3
3,775,170	-				+0.1
3,775,170	-				-0.1
3,775,170	-				+2.3
3,775,170	-				+2.3
3,775,170	-				-3.0
3,775,170	-				+0.2
3,775,170	-				-0.6
3,775,170	-				+1.4
3,775,170	-				+0.7
3,775,180	+				+0.2
3,775,871	+				+0.8
3,775,871	+				-0.1
3,775,871	+				+0.3
3,775,871	+				-2.4
3,775,871	+				+0.9
3,775,871	+				-0.6
3,775,871	+				+0.3
3,775,871	+				+0.9
3,775,871	+				-1.1
3,775,871	+				+0.4
3,775,871	+				+1.7
3,775,872	-				+0.2
3,775,872	-				+1.1
3,775,872	-				-0.3
3,775,872	-				+0.3
3,775,872	-				-0.0
3,775,872	-				+0.0
3,775,872	-				-1.3
3,775,872	-				-0.8
3,775,872	-				-0.4
3,775,974	+				-0.8
3,775,974	+				-0.3
3,775,974	+				+1.2
3,775,974	+				-0.8
3,775,975	-				-0.5
3,775,975	-				-0.7
3,776,031	+				+0.2
3,776,031	+				+0.5
3,776,031	+				+0.2
3,776,031	+				+0.4
3,776,031	+				+0.4
3,776,032	-				+0.7