Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS16995

Experiment: R2A with SpecU metal mix 1 X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with SpecU metal mix 1 X
3,716,650	+		LRK54_RS16990	0.57	-1.3
3,717,049	-		LRK54_RS16990	0.77	+1.3
3,717,058	+		LRK54_RS16990	0.77	-1.9
3,717,058	+		LRK54_RS16990	0.77	-2.7
3,717,058	+		LRK54_RS16990	0.77	-0.6
3,717,058	+		LRK54_RS16990	0.77	-1.2
3,717,058	+		LRK54_RS16990	0.77	-0.5
3,717,058	+		LRK54_RS16990	0.77	-1.5
3,717,059	-		LRK54_RS16990	0.77	-1.7
3,717,059	-		LRK54_RS16990	0.77	+1.7
3,717,317	+		LRK54_RS16990	0.90	+0.2
3,717,317	+		LRK54_RS16990	0.90	-0.5
3,717,318	-		LRK54_RS16990	0.90	+0.2
3,717,318	-		LRK54_RS16990	0.90	-0.4
3,717,318	-		LRK54_RS16990	0.90	+0.1
3,717,318	-		LRK54_RS16990	0.90	-0.3
3,717,395	+				-1.4
3,717,395	+				-0.9
3,717,395	+				+1.7
3,717,395	+				-2.2
3,717,395	+				-2.5
3,717,395	+				-2.1
3,717,395	+				-1.0
3,717,396	-				-1.3
3,717,396	-				-1.3
3,717,396	-				-1.3
3,717,396	-				-0.3
3,717,396	-				+0.7
3,717,396	-				-0.4
3,717,400	+				+0.7
3,717,400	+				-1.7
3,717,401	-				-2.1
3,717,401	-				-2.4
3,717,401	-				-2.3
3,717,401	-				-1.6
3,717,401	-				-0.6
3,717,401	-				-1.0
3,717,401	-				-1.9
3,717,401	-				+0.3
3,717,591	+				+0.6
3,717,591	+				-0.9
3,717,591	+				-1.6
3,717,591	+				-1.0
3,717,591	+				-0.9
3,717,591	+				+0.7
3,717,591	+				+1.0
3,717,591	+				-0.4
3,717,591	+				+0.4
3,717,591	+				+0.2
3,717,591	+				+0.0
3,717,591	+				-0.1
3,717,591	+				+0.1
3,717,591	+				+0.8
3,717,591	+				-1.0
3,717,591	+				+0.7
3,717,591	+				+0.3
3,717,591	+				+0.6
3,717,592	-				+0.1
3,717,592	-				-3.0
3,717,592	-				-1.1
3,717,592	-				-0.3
3,717,592	-				-0.7
3,717,592	-				+1.2
3,717,592	-				-0.9
3,717,592	-				-0.9
3,717,592	-				-1.5
3,717,592	-				-1.3
3,717,592	-				-0.3
3,717,592	-				-0.8
3,717,592	-				+1.0
3,717,592	-				+0.2
3,717,592	-				+0.1
3,717,592	-				+0.9
3,717,592	-				-0.9
3,717,648	+		LRK54_RS16995	0.12	-0.3
3,717,648	+		LRK54_RS16995	0.12	-0.8
3,717,648	+		LRK54_RS16995	0.12	+0.1
3,717,648	+		LRK54_RS16995	0.12	+0.3
3,717,648	+		LRK54_RS16995	0.12	-1.0
3,717,648	+		LRK54_RS16995	0.12	-1.7
3,717,648	+		LRK54_RS16995	0.12	-0.9
3,717,648	+		LRK54_RS16995	0.12	-0.0
3,717,648	+		LRK54_RS16995	0.12	-0.8
3,717,648	+		LRK54_RS16995	0.12	+0.3
3,717,648	+		LRK54_RS16995	0.12	+0.3
3,717,648	+		LRK54_RS16995	0.12	-0.2
3,717,648	+		LRK54_RS16995	0.12	-0.9
3,717,648	+		LRK54_RS16995	0.12	+1.0
3,717,648	+		LRK54_RS16995	0.12	+0.7
3,717,648	+		LRK54_RS16995	0.12	-0.2
3,717,648	+		LRK54_RS16995	0.12	-1.1
3,717,649	-		LRK54_RS16995	0.12	-0.5
3,717,649	-		LRK54_RS16995	0.12	-1.6
3,717,649	-		LRK54_RS16995	0.12	+3.0
3,717,649	-		LRK54_RS16995	0.12	-0.5
3,717,649	-		LRK54_RS16995	0.12	-0.2
3,717,649	-		LRK54_RS16995	0.12	-1.4
3,717,649	-		LRK54_RS16995	0.12	-0.5
3,717,649	-		LRK54_RS16995	0.12	+0.1
3,717,649	-		LRK54_RS16995	0.12	-0.6
3,717,649	-		LRK54_RS16995	0.12	+1.3
3,717,649	-		LRK54_RS16995	0.12	-0.2
3,717,649	-		LRK54_RS16995	0.12	+0.3
3,717,649	-		LRK54_RS16995	0.12	-0.7
3,717,649	-		LRK54_RS16995	0.12	-0.0
3,717,649	-		LRK54_RS16995	0.12	-0.9
3,717,649	-		LRK54_RS16995	0.12	-1.1
3,718,044	+		LRK54_RS16995	0.77	+0.3
3,718,045	-		LRK54_RS16995	0.77	+1.5
3,718,045	-		LRK54_RS16995	0.77	-1.1
3,718,045	-		LRK54_RS16995	0.77	+0.1
3,718,143	+				+0.3
3,718,143	+				+0.4
3,718,143	+				+2.0
3,718,143	+				-0.5
3,718,143	+				-0.6
3,718,143	+				+1.1
3,718,143	+				+0.1
3,718,143	+				+1.3
3,718,143	+				+0.3
3,718,143	+				+1.4
3,718,143	+				-0.9
3,718,143	+				-1.0
3,718,143	+				-0.9
3,718,143	+				-1.2
3,718,143	+				-0.5
3,718,143	+				-0.8
3,718,143	+				+0.7
3,718,143	+				-0.0
3,718,144	-				+0.0
3,718,144	-				-1.0
3,718,144	-				-0.9
3,718,144	-				-0.8
3,718,144	-				+0.3
3,718,144	-				-0.4
3,718,144	-				-1.7
3,718,144	-				-1.5
3,718,144	-				-1.4
3,718,144	-				+1.7
3,718,144	-				-2.7
3,718,144	-				-1.7
3,718,146	+				-1.9
3,718,146	+				-0.6
3,718,146	+				-0.0
3,718,146	+				+1.0
3,718,146	+				-1.6
3,718,146	+				-0.9
3,718,146	+				-1.6
3,718,147	-				-0.1
3,718,147	-				+1.1
3,718,147	-				-1.2
3,718,147	-				+0.2
3,718,147	-				-0.9
3,718,147	-				-0.0
3,718,147	-				-0.6
3,718,147	-				-2.5
3,718,147	-				+0.7
3,718,147	-				-0.2
3,718,147	-				+0.3
3,718,147	-				-0.1
3,718,147	-				-0.7
3,718,274	+				+0.8
3,718,274	+				-0.3
3,718,275	-				+0.1
3,719,005	+		LRK54_RS17000	0.52	+1.3
3,719,005	+		LRK54_RS17000	0.52	+0.7
3,719,005	+		LRK54_RS17000	0.52	+0.5
3,719,005	+		LRK54_RS17000	0.52	-0.3
3,719,006	-		LRK54_RS17000	0.52	-0.4
3,719,006	-		LRK54_RS17000	0.52	-0.6
3,719,006	-		LRK54_RS17000	0.52	-0.9
3,719,006	-		LRK54_RS17000	0.52	-0.5
3,719,006	-		LRK54_RS17000	0.52	-0.9
3,719,006	-		LRK54_RS17000	0.52	-0.6
3,719,006	-		LRK54_RS17000	0.52	+0.7
3,719,006	-		LRK54_RS17000	0.52	+0.2
3,719,006	-		LRK54_RS17000	0.52	-0.4
3,719,006	-		LRK54_RS17000	0.52	-0.5
3,719,006	-		LRK54_RS17000	0.52	-0.4
3,719,006	-		LRK54_RS17000	0.52	-1.6
3,719,006	-		LRK54_RS17000	0.52	-0.6
3,719,006	-		LRK54_RS17000	0.52	+0.1
3,719,006	-		LRK54_RS17000	0.52	-0.4
3,719,006	-		LRK54_RS17000	0.52	-0.9