Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS16930

Experiment: R2A with SpecU metal mix 1 X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with SpecU metal mix 1 X
3,701,986	+		LRK54_RS16925	0.86	+0.7
3,701,986	+		LRK54_RS16925	0.86	+1.6
3,701,986	+		LRK54_RS16925	0.86	-0.2
3,701,986	+		LRK54_RS16925	0.86	-0.1
3,701,986	+		LRK54_RS16925	0.86	+2.9
3,701,986	+		LRK54_RS16925	0.86	+0.6
3,701,986	+		LRK54_RS16925	0.86	-0.2
3,701,986	+		LRK54_RS16925	0.86	+0.1
3,701,986	+		LRK54_RS16925	0.86	+0.8
3,701,986	+		LRK54_RS16925	0.86	+0.9
3,701,986	+		LRK54_RS16925	0.86	+0.3
3,701,986	+		LRK54_RS16925	0.86	+3.1
3,701,986	+		LRK54_RS16925	0.86	+0.4
3,701,987	-		LRK54_RS16925	0.86	-0.1
3,701,987	-		LRK54_RS16925	0.86	+1.4
3,701,987	-		LRK54_RS16925	0.86	-0.3
3,701,987	-		LRK54_RS16925	0.86	+0.3
3,702,037	+		LRK54_RS16925	0.89	-0.7
3,702,037	+		LRK54_RS16925	0.89	+0.6
3,702,037	+		LRK54_RS16925	0.89	+1.1
3,702,038	-		LRK54_RS16925	0.89	-0.4
3,702,278	+				+0.7
3,702,278	+				+0.8
3,702,278	+				+1.7
3,702,278	+				-0.3
3,702,278	+				+1.1
3,702,278	+				+0.5
3,702,278	+				+1.1
3,702,278	+				+1.3
3,702,278	+				+0.9
3,702,278	+				+0.2
3,702,278	+				+0.7
3,702,278	+				+1.3
3,702,278	+				+0.2
3,702,278	+				+0.7
3,702,278	+				+0.2
3,702,279	-				+0.2
3,702,279	-				+0.7
3,702,279	-				-0.7
3,702,279	-				+0.4
3,702,279	-				+0.8
3,702,279	-				-0.5
3,702,279	-				+0.8
3,702,279	-				-0.4
3,702,279	-				+0.4
3,702,279	-				+0.5
3,702,279	-				-0.4
3,702,279	-				+0.1
3,702,279	-				-1.0
3,702,307	+				-0.0
3,702,307	+				-0.0
3,702,307	+				+0.7
3,702,307	+				+1.0
3,702,358	-				-1.2
3,702,558	+				-0.8
3,702,559	-				-2.3
3,702,559	-				+0.0
3,702,559	-				-0.1
3,702,597	+				+0.6
3,702,597	+				+0.9
3,702,597	+				-0.0
3,702,598	-				-0.9
3,702,598	-				-1.6
3,702,598	-				-2.6
3,702,598	-				-0.3
3,702,598	-				-1.6
3,702,643	+		LRK54_RS16930	0.11	-0.3
3,702,643	+		LRK54_RS16930	0.11	-1.3
3,702,643	+		LRK54_RS16930	0.11	-0.7
3,702,643	+		LRK54_RS16930	0.11	-2.9
3,702,643	+		LRK54_RS16930	0.11	+0.1
3,702,643	+		LRK54_RS16930	0.11	-1.3
3,702,643	+		LRK54_RS16930	0.11	-0.0
3,702,644	-		LRK54_RS16930	0.12	-3.0
3,702,644	-		LRK54_RS16930	0.12	-1.0
3,702,644	-		LRK54_RS16930	0.12	-1.3
3,702,644	-		LRK54_RS16930	0.12	-0.7
3,702,644	-		LRK54_RS16930	0.12	-0.9
3,702,644	-		LRK54_RS16930	0.12	-1.3
3,702,644	-		LRK54_RS16930	0.12	-0.3
3,702,644	-		LRK54_RS16930	0.12	+0.7
3,702,746	+		LRK54_RS16930	0.32	-0.3
3,702,746	+		LRK54_RS16930	0.32	+0.1
3,702,746	+		LRK54_RS16930	0.32	+0.3
3,702,746	+		LRK54_RS16930	0.32	-0.4
3,702,746	+		LRK54_RS16930	0.32	-0.7
3,702,746	+		LRK54_RS16930	0.32	-2.1
3,702,746	+		LRK54_RS16930	0.32	-0.9
3,702,746	+		LRK54_RS16930	0.32	-2.1
3,702,746	+		LRK54_RS16930	0.32	-1.1
3,702,746	+		LRK54_RS16930	0.32	-0.6
3,702,746	+		LRK54_RS16930	0.32	+1.4
3,702,746	+		LRK54_RS16930	0.32	-3.1
3,702,746	+		LRK54_RS16930	0.32	-1.9
3,702,746	+		LRK54_RS16930	0.32	-1.2
3,702,746	+		LRK54_RS16930	0.32	-0.6
3,702,746	+		LRK54_RS16930	0.32	+1.9
3,702,747	-		LRK54_RS16930	0.32	+1.3
3,702,747	-		LRK54_RS16930	0.32	-1.3
3,702,747	-		LRK54_RS16930	0.32	+1.1
3,702,747	-		LRK54_RS16930	0.32	-2.3
3,702,747	-		LRK54_RS16930	0.32	-2.1
3,702,747	-		LRK54_RS16930	0.32	-1.9
3,702,747	-		LRK54_RS16930	0.32	-0.6
3,702,747	-		LRK54_RS16930	0.32	-0.3
3,702,747	-		LRK54_RS16930	0.32	-1.6
3,702,747	-		LRK54_RS16930	0.32	-1.3
3,702,747	-		LRK54_RS16930	0.32	-1.4
3,702,747	-		LRK54_RS16930	0.32	-3.1
3,702,747	-		LRK54_RS16930	0.32	-0.6
3,702,747	-		LRK54_RS16930	0.32	-0.9
3,702,747	-		LRK54_RS16930	0.32	-0.9
3,702,747	-		LRK54_RS16930	0.32	-1.2
3,702,747	-		LRK54_RS16930	0.32	-1.7
3,702,747	-		LRK54_RS16930	0.32	-0.9
3,702,747	-		LRK54_RS16930	0.32	-3.3
3,702,747	-		LRK54_RS16930	0.32	-1.3
3,702,747	-		LRK54_RS16930	0.32	+0.7
3,702,747	-		LRK54_RS16930	0.32	+1.3
3,702,747	-		LRK54_RS16930	0.32	-0.7
3,702,747	-		LRK54_RS16930	0.32	+1.7
3,702,747	-		LRK54_RS16930	0.32	-2.0
3,702,747	-		LRK54_RS16930	0.32	-1.6
3,702,836	+		LRK54_RS16930	0.50	-1.9
3,702,836	+		LRK54_RS16930	0.50	-1.0
3,702,836	+		LRK54_RS16930	0.50	-1.3
3,702,836	+		LRK54_RS16930	0.50	-1.6
3,702,836	+		LRK54_RS16930	0.50	-1.9
3,702,836	+		LRK54_RS16930	0.50	+1.1
3,702,836	+		LRK54_RS16930	0.50	-1.8
3,702,836	+		LRK54_RS16930	0.50	-0.0
3,702,836	+		LRK54_RS16930	0.50	-0.6
3,702,836	+		LRK54_RS16930	0.50	-0.9
3,702,836	+		LRK54_RS16930	0.50	-1.6
3,702,836	+		LRK54_RS16930	0.50	-1.5
3,702,837	-		LRK54_RS16930	0.51	-0.9
3,702,837	-		LRK54_RS16930	0.51	-1.3
3,702,837	-		LRK54_RS16930	0.51	-1.7
3,702,837	-		LRK54_RS16930	0.51	-1.0
3,702,837	-		LRK54_RS16930	0.51	-0.3
3,702,837	-		LRK54_RS16930	0.51	-1.1
3,702,837	-		LRK54_RS16930	0.51	-0.4
3,702,837	-		LRK54_RS16930	0.51	-1.6
3,702,837	-		LRK54_RS16930	0.51	+0.3
3,702,837	-		LRK54_RS16930	0.51	+0.4
3,702,837	-		LRK54_RS16930	0.51	-2.0
3,702,837	-		LRK54_RS16930	0.51	-0.3
3,702,837	-		LRK54_RS16930	0.51	-0.0
3,702,837	-		LRK54_RS16930	0.51	-0.3
3,702,866	+		LRK54_RS16930	0.56	-1.3
3,702,866	+		LRK54_RS16930	0.56	+1.3
3,702,866	+		LRK54_RS16930	0.56	-1.3
3,702,866	+		LRK54_RS16930	0.56	-0.6
3,702,866	+		LRK54_RS16930	0.56	-0.2
3,702,866	+		LRK54_RS16930	0.56	-1.6
3,702,867	-		LRK54_RS16930	0.57	-1.7
3,702,867	-		LRK54_RS16930	0.57	-1.6
3,702,867	-		LRK54_RS16930	0.57	-0.3
3,702,867	-		LRK54_RS16930	0.57	-2.1
3,702,867	-		LRK54_RS16930	0.57	+2.3
3,702,867	-		LRK54_RS16930	0.57	-2.1
3,702,867	-		LRK54_RS16930	0.57	-1.9
3,702,867	-		LRK54_RS16930	0.57	-1.0
3,702,867	-		LRK54_RS16930	0.57	+0.7
3,703,174	-				-0.9
3,703,201	+				+0.0
3,703,201	+				-0.9
3,703,201	+				+0.1
3,703,201	+				-0.2
3,703,201	+				-1.1
3,703,201	+				-2.1
3,703,201	+				-0.5
3,703,201	+				-0.3
3,703,201	+				-0.9
3,703,201	+				+0.4
3,703,202	-				-1.8
3,703,202	-				+0.7
3,703,202	-				+1.7
3,703,202	-				-0.3
3,703,202	-				-1.3
3,703,202	-				-1.3
3,703,202	-				-0.0
3,703,202	-				-0.3
3,703,202	-				-0.9
3,703,202	-				-2.1
3,703,202	-				-0.3
3,703,530	+		LRK54_RS16935	0.17	-1.2
3,703,530	+		LRK54_RS16935	0.17	-1.6
3,703,531	-		LRK54_RS16935	0.17	-1.1
3,703,536	+		LRK54_RS16935	0.17	+1.3
3,703,536	+		LRK54_RS16935	0.17	-0.3
3,703,536	+		LRK54_RS16935	0.17	-2.1
3,703,536	+		LRK54_RS16935	0.17	-3.2
3,703,536	+		LRK54_RS16935	0.17	-1.9
3,703,536	+		LRK54_RS16935	0.17	-1.3
3,703,536	+		LRK54_RS16935	0.17	-1.9
3,703,537	-		LRK54_RS16935	0.17	-3.2
3,703,537	-		LRK54_RS16935	0.17	-1.7
3,703,537	-		LRK54_RS16935	0.17	+0.4
3,703,537	-		LRK54_RS16935	0.17	-1.2
3,703,537	-		LRK54_RS16935	0.17	-3.0
3,703,537	-		LRK54_RS16935	0.17	-1.4
3,703,537	-		LRK54_RS16935	0.17	-1.3
3,703,537	-		LRK54_RS16935	0.17	-3.2
3,703,731	+		LRK54_RS16935	0.25	-0.3
3,703,731	+		LRK54_RS16935	0.25	-0.2
3,703,731	+		LRK54_RS16935	0.25	-0.6
3,703,732	-		LRK54_RS16935	0.25	-1.0
3,703,959	+		LRK54_RS16935	0.34	-1.0
3,703,959	+		LRK54_RS16935	0.34	-0.9
3,703,959	+		LRK54_RS16935	0.34	-0.9
3,703,959	+		LRK54_RS16935	0.34	-1.6
3,703,959	+		LRK54_RS16935	0.34	+0.7
3,703,959	+		LRK54_RS16935	0.34	-2.1
3,703,960	-		LRK54_RS16935	0.34	-1.3
3,703,960	-		LRK54_RS16935	0.34	-0.3
3,703,960	-		LRK54_RS16935	0.34	+1.1
3,703,960	-		LRK54_RS16935	0.34	-1.5
3,703,960	-		LRK54_RS16935	0.34	+0.7
3,703,960	-		LRK54_RS16935	0.34	-0.3
3,703,960	-		LRK54_RS16935	0.34	-1.2
3,703,960	-		LRK54_RS16935	0.34	-1.1
3,703,960	-		LRK54_RS16935	0.34	-1.7
3,703,960	-		LRK54_RS16935	0.34	-0.9
3,703,969	+		LRK54_RS16935	0.34	-2.5
3,703,969	+		LRK54_RS16935	0.34	-0.6
3,703,969	+		LRK54_RS16935	0.34	-2.5
3,703,969	+		LRK54_RS16935	0.34	-0.3
3,703,969	+		LRK54_RS16935	0.34	-2.3
3,703,969	+		LRK54_RS16935	0.34	-0.8
3,703,969	+		LRK54_RS16935	0.34	+0.4
3,703,969	+		LRK54_RS16935	0.34	-1.1
3,703,969	+		LRK54_RS16935	0.34	-2.5
3,703,969	+		LRK54_RS16935	0.34	+0.7
3,703,969	+		LRK54_RS16935	0.34	-1.2
3,703,969	+		LRK54_RS16935	0.34	-3.2
3,703,969	+		LRK54_RS16935	0.34	-1.1
3,703,969	+		LRK54_RS16935	0.34	-2.3
3,703,969	+		LRK54_RS16935	0.34	-2.8
3,703,969	+		LRK54_RS16935	0.34	-0.1
3,703,969	+		LRK54_RS16935	0.34	-1.6
3,703,969	+		LRK54_RS16935	0.34	-0.2
3,703,969	+		LRK54_RS16935	0.34	-1.2
3,703,970	-		LRK54_RS16935	0.34	-1.4
3,703,970	-		LRK54_RS16935	0.34	-1.3
3,703,970	-		LRK54_RS16935	0.34	-0.6
3,703,970	-		LRK54_RS16935	0.34	-1.6
3,703,970	-		LRK54_RS16935	0.34	-1.9
3,703,970	-		LRK54_RS16935	0.34	-0.9
3,703,970	-		LRK54_RS16935	0.34	+0.7
3,703,970	-		LRK54_RS16935	0.34	-0.8
3,703,970	-		LRK54_RS16935	0.34	-2.2
3,703,970	-		LRK54_RS16935	0.34	-0.3
3,703,970	-		LRK54_RS16935	0.34	-0.3
3,703,970	-		LRK54_RS16935	0.34	+0.7
3,703,970	-		LRK54_RS16935	0.34	-2.1
3,703,970	-		LRK54_RS16935	0.34	-1.1
3,703,970	-		LRK54_RS16935	0.34	-2.9
3,703,970	-		LRK54_RS16935	0.34	-0.3
3,703,970	-		LRK54_RS16935	0.34	-1.9
3,703,970	-		LRK54_RS16935	0.34	-2.1
3,703,970	-		LRK54_RS16935	0.34	+0.1
3,703,970	-		LRK54_RS16935	0.34	+1.7
3,703,970	-		LRK54_RS16935	0.34	-0.3
3,703,970	-		LRK54_RS16935	0.34	-0.9
3,703,970	-		LRK54_RS16935	0.34	+0.7
3,703,970	-		LRK54_RS16935	0.34	-1.1