Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS16755

Experiment: R2A with SpecU metal mix 1 X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with SpecU metal mix 1 X
3,670,178	+				-0.3
3,670,275	+				-1.3
3,670,275	+				-1.8
3,670,275	+				-0.6
3,670,275	+				+2.3
3,670,275	+				-0.9
3,670,275	+				+0.1
3,670,275	+				+0.0
3,670,276	-				-2.6
3,670,276	-				-1.3
3,670,276	-				-3.8
3,670,276	-				-1.5
3,670,276	-				-2.9
3,670,276	-				-0.3
3,670,277	+				-0.9
3,670,277	+				-0.9
3,670,277	+				+2.3
3,670,277	+				+0.7
3,670,277	+				-0.3
3,670,278	-				-4.3
3,670,278	-				-2.0
3,670,278	-				-1.6
3,670,278	-				-1.3
3,670,278	-				-0.7
3,670,278	-				-1.9
3,670,305	+				-0.0
3,670,305	+				-1.5
3,670,305	+				+1.3
3,670,305	+				+0.3
3,670,305	+				-1.9
3,670,305	+				-2.4
3,670,305	+				-1.6
3,670,305	+				-1.0
3,670,305	+				+0.1
3,670,305	+				-0.5
3,670,305	+				-0.8
3,670,305	+				+0.1
3,670,305	+				-1.9
3,670,305	+				-0.6
3,670,306	-				-0.5
3,670,306	-				-2.5
3,670,306	-				-0.9
3,670,306	-				-0.3
3,670,306	-				-2.9
3,670,306	-				-1.6
3,670,306	-				-1.0
3,670,306	-				-1.9
3,670,306	-				-0.3
3,670,306	-				-2.3
3,670,306	-				-1.9
3,670,335	-				-2.1
3,670,430	+				-2.3
3,670,430	+				-1.8
3,670,430	+				-2.1
3,670,430	+				-1.6
3,670,430	+				-0.9
3,670,430	+				-1.3
3,670,430	+				-2.5
3,670,431	-				-1.9
3,670,431	-				-0.9
3,670,431	-				-0.9
3,670,431	-				-3.8
3,670,431	-				-1.3
3,670,431	-				-0.3
3,670,431	-				-2.6
3,670,431	-				-2.6
3,670,431	-				-3.5
3,670,431	-				-1.3
3,670,568	+		LRK54_RS16740	0.52	-2.0
3,670,568	+		LRK54_RS16740	0.52	-2.6
3,670,569	-		LRK54_RS16740	0.53	-0.3
3,670,569	-		LRK54_RS16740	0.53	-3.3
3,670,569	-		LRK54_RS16740	0.53	+1.3
3,670,569	-		LRK54_RS16740	0.53	-0.3
3,670,690	+				-1.7
3,670,690	+				-1.3
3,670,690	+				-1.0
3,670,695	+				-1.3
3,670,695	+				-1.3
3,670,695	+				-1.5
3,670,695	+				-2.0
3,670,696	-				-0.3
3,670,724	+				+0.7
3,670,724	+				-0.9
3,670,749	+		LRK54_RS16745	0.43	-0.3
3,670,749	+		LRK54_RS16745	0.43	+2.3
3,670,809	-		LRK54_RS16750	0.10	-1.6
3,670,809	-		LRK54_RS16750	0.10	+0.7
3,670,822	-		LRK54_RS16750	0.27	-2.1
3,670,932	+				+1.0
3,670,932	+				-1.3
3,670,932	+				+0.2
3,671,039	+				-1.6
3,671,039	+				-1.3
3,671,040	-				-0.3
3,671,118	+				+0.7
3,671,118	+				-0.9
3,671,118	+				-0.9
3,671,119	-				-2.1
3,671,119	-				+0.7
3,671,119	-				+0.7
3,671,370	+		LRK54_RS16755	0.18	-0.3
3,671,370	+		LRK54_RS16755	0.18	-0.9
3,671,370	+		LRK54_RS16755	0.18	-0.9
3,671,370	+		LRK54_RS16755	0.18	-2.1
3,671,371	-		LRK54_RS16755	0.18	-0.3
3,671,448	+		LRK54_RS16755	0.22	-1.3
3,671,449	-		LRK54_RS16755	0.22	-1.3
3,671,595	+		LRK54_RS16755	0.30	-1.6
3,671,596	-		LRK54_RS16755	0.30	-0.3
3,671,661	+		LRK54_RS16755	0.34	+0.7
3,671,661	+		LRK54_RS16755	0.34	+0.7
3,671,662	-		LRK54_RS16755	0.34	-1.3
3,671,662	-		LRK54_RS16755	0.34	-0.3
3,671,682	+		LRK54_RS16755	0.35	-1.3
3,671,682	+		LRK54_RS16755	0.35	-0.3
3,671,682	+		LRK54_RS16755	0.35	-2.1
3,671,682	+		LRK54_RS16755	0.35	-1.6
3,671,682	+		LRK54_RS16755	0.35	-0.9
3,671,683	-		LRK54_RS16755	0.35	-1.3
3,671,683	-		LRK54_RS16755	0.35	-2.1
3,671,683	-		LRK54_RS16755	0.35	-0.9
3,671,683	-		LRK54_RS16755	0.35	-0.9
3,671,683	-		LRK54_RS16755	0.35	-1.3
3,671,683	-		LRK54_RS16755	0.35	-0.9
3,671,683	-		LRK54_RS16755	0.35	+1.7
3,671,683	-		LRK54_RS16755	0.35	+0.7
3,671,712	+		LRK54_RS16755	0.36	-1.6
3,671,712	+		LRK54_RS16755	0.36	-0.3
3,671,712	+		LRK54_RS16755	0.36	+0.7
3,671,712	+		LRK54_RS16755	0.36	-2.6
3,671,713	-		LRK54_RS16755	0.36	-2.1
3,672,101	+		LRK54_RS16755	0.57	+0.7
3,672,101	+		LRK54_RS16755	0.57	-1.6
3,672,102	-		LRK54_RS16755	0.57	+0.7
3,672,102	-		LRK54_RS16755	0.57	-0.9
3,672,102	-		LRK54_RS16755	0.57	-0.9
3,672,102	-		LRK54_RS16755	0.57	-1.3
3,672,201	+		LRK54_RS16755	0.62	-1.6
3,672,201	+		LRK54_RS16755	0.62	-1.3
3,672,201	+		LRK54_RS16755	0.62	-1.3
3,672,202	-		LRK54_RS16755	0.62	-1.6
3,672,202	-		LRK54_RS16755	0.62	-1.6
3,672,202	-		LRK54_RS16755	0.62	-2.3
3,672,202	-		LRK54_RS16755	0.62	-0.9
3,672,202	-		LRK54_RS16755	0.62	-0.3
3,672,202	-		LRK54_RS16755	0.62	-0.3
3,672,237	+		LRK54_RS16755	0.64	-0.3
3,672,237	+		LRK54_RS16755	0.64	-1.3
3,672,237	+		LRK54_RS16755	0.64	-1.3
3,672,382	+		LRK54_RS16755	0.72	-1.6
3,672,382	+		LRK54_RS16755	0.72	-2.5
3,672,640	+		LRK54_RS16755	0.85	-0.9
3,672,640	+		LRK54_RS16755	0.85	-1.6
3,672,640	+		LRK54_RS16755	0.85	-1.3
3,672,641	-		LRK54_RS16755	0.85	-1.3
3,672,747	+				-2.1
3,672,747	+				-1.6
3,672,747	+				-2.5
3,672,747	+				-2.3
3,672,747	+				-0.3
3,672,747	+				+0.7
3,672,747	+				-0.3
3,672,747	+				-2.1
3,672,747	+				-0.3
3,672,747	+				-1.6
3,672,747	+				-1.3
3,672,747	+				-1.6
3,672,747	+				-0.3
3,672,748	-				-1.9
3,672,748	-				+0.7
3,672,748	-				-0.3
3,672,748	-				+0.7
3,672,748	-				-0.9
3,672,748	-				-1.6
3,672,748	-				-1.6
3,672,849	+				-1.5
3,672,850	-				-0.3
3,672,921	+				+0.2
3,672,921	+				-1.3
3,672,921	+				+1.3
3,672,921	+				+0.4
3,672,921	+				+0.2
3,672,921	+				+1.1
3,672,921	+				+0.6
3,672,921	+				+0.5
3,672,922	-				+0.1
3,672,922	-				-0.4
3,672,922	-				+1.5
3,672,922	-				-0.1
3,672,922	-				-1.4
3,672,922	-				-1.2
3,672,922	-				-2.4
3,673,087	+				-0.7
3,673,087	+				-0.3
3,673,087	+				-0.7
3,673,087	+				-0.1
3,673,087	+				+0.2
3,673,087	+				+0.1
3,673,087	+				-0.5
3,673,087	+				+0.2
3,673,088	-				-0.1
3,673,088	-				+0.5
3,673,088	-				-0.4
3,673,088	-				-0.3
3,673,088	-				-0.2
3,673,180	+				+0.3
3,673,180	+				+1.4
3,673,180	+				-0.5
3,673,180	+				+1.9
3,673,180	+				+0.2
3,673,180	+				-0.6
3,673,180	+				+0.0
3,673,180	+				+0.6
3,673,181	-				-0.5
3,673,181	-				+0.3
3,673,181	-				-0.1
3,673,181	-				+0.4
3,673,181	-				-0.2
3,673,181	-				-0.6
3,673,375	+		LRK54_RS16760	0.29	+0.5
3,673,375	+		LRK54_RS16760	0.29	+0.7
3,673,376	-		LRK54_RS16760	0.29	+0.4
3,673,376	-		LRK54_RS16760	0.29	+1.7
3,673,376	-		LRK54_RS16760	0.29	-0.2
3,673,376	-		LRK54_RS16760	0.29	+0.5
3,673,680	+		LRK54_RS16760	0.60	-1.3
3,673,680	+		LRK54_RS16760	0.60	-1.9
3,673,680	+		LRK54_RS16760	0.60	+0.7
3,673,680	+		LRK54_RS16760	0.60	+0.7
3,673,702	+		LRK54_RS16760	0.62	-0.1
3,673,702	+		LRK54_RS16760	0.62	+1.2
3,673,702	+		LRK54_RS16760	0.62	+0.8
3,673,702	+		LRK54_RS16760	0.62	+0.3
3,673,702	+		LRK54_RS16760	0.62	+1.2
3,673,702	+		LRK54_RS16760	0.62	+0.7
3,673,702	+		LRK54_RS16760	0.62	+0.2
3,673,703	-		LRK54_RS16760	0.62	+1.1
3,673,703	-		LRK54_RS16760	0.62	+2.3
3,673,703	-		LRK54_RS16760	0.62	+0.9
3,673,703	-		LRK54_RS16760	0.62	+0.7
3,673,703	-		LRK54_RS16760	0.62	+0.3
3,673,703	-		LRK54_RS16760	0.62	+0.6
3,673,703	-		LRK54_RS16760	0.62	+0.7
3,673,703	-		LRK54_RS16760	0.62	+0.2
3,673,708	+		LRK54_RS16760	0.62	+1.0
3,673,708	+		LRK54_RS16760	0.62	+1.9
3,673,708	+		LRK54_RS16760	0.62	+0.4
3,673,709	-		LRK54_RS16760	0.63	+0.7
3,673,709	-		LRK54_RS16760	0.63	-0.3
3,673,709	-		LRK54_RS16760	0.63	+0.5
3,673,709	-		LRK54_RS16760	0.63	+1.7
3,673,709	-		LRK54_RS16760	0.63	+0.4
3,673,709	-		LRK54_RS16760	0.63	+0.5
3,673,709	-		LRK54_RS16760	0.63	+1.5
3,673,744	+		LRK54_RS16760	0.66	+0.6
3,673,744	+		LRK54_RS16760	0.66	+0.7
3,673,744	+		LRK54_RS16760	0.66	+1.8
3,673,744	+		LRK54_RS16760	0.66	-0.6
3,673,745	-		LRK54_RS16760	0.66	+1.3
3,673,785	+		LRK54_RS16760	0.70	+0.3
3,673,786	-		LRK54_RS16760	0.70	+0.5
3,673,786	-		LRK54_RS16760	0.70	+0.5
3,673,786	-		LRK54_RS16760	0.70	-0.5
3,673,786	-		LRK54_RS16760	0.70	-0.2
3,673,804	+		LRK54_RS16760	0.72	-0.6
3,673,804	+		LRK54_RS16760	0.72	+1.4
3,673,804	+		LRK54_RS16760	0.72	+0.4
3,673,804	+		LRK54_RS16760	0.72	-1.0
3,673,804	+		LRK54_RS16760	0.72	+2.1
3,673,805	-		LRK54_RS16760	0.72	+1.2
3,673,805	-		LRK54_RS16760	0.72	+0.4