Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS16730

Experiment: R2A with SpecU metal mix 1 X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with SpecU metal mix 1 X
3,665,196	+		LRK54_RS16720	0.87	-1.6
3,665,196	+		LRK54_RS16720	0.87	-1.6
3,665,196	+		LRK54_RS16720	0.87	-2.3
3,665,196	+		LRK54_RS16720	0.87	-1.6
3,665,196	+		LRK54_RS16720	0.87	-0.3
3,665,196	+		LRK54_RS16720	0.87	-2.3
3,665,196	+		LRK54_RS16720	0.87	-0.9
3,665,196	+		LRK54_RS16720	0.87	-1.5
3,665,196	+		LRK54_RS16720	0.87	-2.3
3,665,196	+		LRK54_RS16720	0.87	+0.1
3,665,197	-		LRK54_RS16720	0.87	-2.1
3,665,197	-		LRK54_RS16720	0.87	-0.3
3,665,197	-		LRK54_RS16720	0.87	-2.1
3,665,197	-		LRK54_RS16720	0.87	-2.2
3,665,197	-		LRK54_RS16720	0.87	-1.6
3,665,197	-		LRK54_RS16720	0.87	-1.6
3,665,197	-		LRK54_RS16720	0.87	-1.9
3,665,197	-		LRK54_RS16720	0.87	-0.3
3,665,197	-		LRK54_RS16720	0.87	-1.9
3,665,226	+		LRK54_RS16720	0.89	+0.5
3,665,226	+		LRK54_RS16720	0.89	-1.9
3,665,226	+		LRK54_RS16720	0.89	-1.2
3,665,226	+		LRK54_RS16720	0.89	-0.5
3,665,226	+		LRK54_RS16720	0.89	-1.6
3,665,226	+		LRK54_RS16720	0.89	-0.3
3,665,484	+		LRK54_RS16725	0.13	+0.7
3,665,484	+		LRK54_RS16725	0.13	-1.3
3,665,856	+		LRK54_RS16725	0.72	-1.6
3,665,857	-		LRK54_RS16725	0.73	+0.7
3,665,883	+		LRK54_RS16725	0.77	-0.3
3,665,884	-		LRK54_RS16725	0.77	-0.3
3,666,041	+				-0.6
3,666,041	+				+0.0
3,666,041	+				-0.3
3,666,042	-				-1.1
3,666,042	-				+0.4
3,666,042	-				-3.2
3,666,097	+				-1.3
3,666,097	+				-0.3
3,666,097	+				+3.5
3,666,097	+				-0.3
3,666,097	+				+0.7
3,666,097	+				-0.9
3,666,097	+				-0.2
3,666,098	-				+0.1
3,666,098	-				-0.3
3,666,098	-				-1.2
3,666,098	-				+0.1
3,666,120	+				+0.1
3,666,121	-				-1.3
3,666,138	+				+0.2
3,666,138	+				-0.3
3,666,138	+				-0.9
3,666,138	+				-0.9
3,666,138	+				-1.9
3,666,138	+				+0.3
3,666,138	+				-0.9
3,666,138	+				-0.3
3,666,139	-				+0.7
3,666,139	-				-0.3
3,666,187	+				-1.3
3,666,188	-				-1.3
3,666,188	-				+0.7
3,666,373	+		LRK54_RS16730	0.18	-0.3
3,666,373	+		LRK54_RS16730	0.18	-1.3
3,666,373	+		LRK54_RS16730	0.18	-1.9
3,666,374	-		LRK54_RS16730	0.18	+0.7
3,666,421	+		LRK54_RS16730	0.22	-1.3
3,666,421	+		LRK54_RS16730	0.22	-2.3
3,666,421	+		LRK54_RS16730	0.22	-0.3
3,666,421	+		LRK54_RS16730	0.22	-0.9
3,666,421	+		LRK54_RS16730	0.22	+0.7
3,666,421	+		LRK54_RS16730	0.22	-0.3
3,666,422	-		LRK54_RS16730	0.22	-1.6
3,666,422	-		LRK54_RS16730	0.22	-0.9
3,666,422	-		LRK54_RS16730	0.22	-1.6
3,666,422	-		LRK54_RS16730	0.22	+0.7
3,666,422	-		LRK54_RS16730	0.22	-2.1
3,666,422	-		LRK54_RS16730	0.22	-1.3
3,666,430	+		LRK54_RS16730	0.23	-0.3
3,666,430	+		LRK54_RS16730	0.23	-0.3
3,666,430	+		LRK54_RS16730	0.23	+0.7
3,666,430	+		LRK54_RS16730	0.23	+0.7
3,666,430	+		LRK54_RS16730	0.23	-1.3
3,666,431	-		LRK54_RS16730	0.23	+0.7
3,666,431	-		LRK54_RS16730	0.23	-1.6
3,666,431	-		LRK54_RS16730	0.23	+0.7
3,666,431	-		LRK54_RS16730	0.23	-1.9
3,666,601	+		LRK54_RS16730	0.36	-0.9
3,666,602	-		LRK54_RS16730	0.36	-0.9
3,666,602	-		LRK54_RS16730	0.36	-0.3
3,666,655	+		LRK54_RS16730	0.40	+0.7
3,666,655	+		LRK54_RS16730	0.40	-0.9
3,666,655	+		LRK54_RS16730	0.40	-1.3
3,666,655	+		LRK54_RS16730	0.40	-0.3
3,666,655	+		LRK54_RS16730	0.40	-1.6
3,666,656	-		LRK54_RS16730	0.40	-1.6
3,666,656	-		LRK54_RS16730	0.40	-0.9
3,666,656	-		LRK54_RS16730	0.40	+1.7
3,666,656	-		LRK54_RS16730	0.40	-0.3
3,666,688	+		LRK54_RS16730	0.42	-0.3
3,666,688	+		LRK54_RS16730	0.42	+0.7
3,666,688	+		LRK54_RS16730	0.42	+0.7
3,666,688	+		LRK54_RS16730	0.42	-0.3
3,666,689	-		LRK54_RS16730	0.43	-1.6
3,666,689	-		LRK54_RS16730	0.43	-1.9
3,666,689	-		LRK54_RS16730	0.43	-0.9
3,666,689	-		LRK54_RS16730	0.43	-1.3
3,666,689	-		LRK54_RS16730	0.43	-1.6
3,666,962	+		LRK54_RS16730	0.64	-1.3
3,666,963	-				-0.3
3,666,963	-		LRK54_RS16730	0.64	+0.7
3,666,998	+		LRK54_RS16730	0.66	-1.6
3,666,998	+		LRK54_RS16730	0.66	-0.3
3,666,998	+		LRK54_RS16730	0.66	-0.9
3,666,999	-		LRK54_RS16730	0.67	-0.3
3,667,294	+		LRK54_RS16730	0.89	-0.9
3,667,295	-		LRK54_RS16730	0.89	-0.3
3,667,295	-		LRK54_RS16730	0.89	-0.3
3,667,369	+				-0.9
3,667,369	+				+0.9
3,667,369	+				+0.7
3,667,369	+				+1.1
3,667,369	+				+1.3
3,667,370	-				+0.1
3,667,370	-				+1.5
3,667,370	-				+0.6
3,667,370	-				+0.4
3,667,370	-				+0.5
3,667,370	-				+0.2
3,667,370	-				-0.4
3,667,378	+				+0.9
3,667,378	+				-0.4
3,667,378	+				+0.5
3,667,378	+				-0.5
3,667,378	+				+1.0
3,667,378	+				+0.4
3,667,378	+				+0.6
3,667,379	-				-0.2
3,667,379	-				-0.5
3,667,379	-				-0.3
3,667,379	-				-1.0
3,667,379	-				-0.2
3,667,379	-				-0.1
3,667,379	-				+0.3
3,667,379	-				+0.5
3,667,379	-				+0.9
3,667,379	-				-0.2
3,667,379	-				+0.6
3,667,379	-				+0.6
3,667,516	+				+0.3
3,667,516	+				-1.0
3,667,516	+				+0.5
3,667,516	+				-0.0
3,667,516	+				+1.1
3,667,516	+				-0.4
3,667,517	-				+0.3
3,667,517	-				-0.4
3,667,517	-				-0.2
3,667,517	-				+1.3
3,667,517	-				+0.4
3,667,517	-				-0.3
3,667,517	-				+1.6
3,667,517	-				+1.2
3,667,517	-				+0.5
3,667,517	-				+1.1
3,667,517	-				-0.5
3,667,517	-				+1.1
3,667,517	-				-0.3
3,667,517	-				-0.8
3,667,517	-				+1.7
3,667,678	+				-1.6
3,667,678	+				-2.8
3,667,679	-				-2.9
3,667,679	-				+0.7
3,667,975	+		LRK54_RS16735	0.15	-2.6
3,667,975	+		LRK54_RS16735	0.15	-1.9
3,667,975	+		LRK54_RS16735	0.15	-2.8
3,667,975	+		LRK54_RS16735	0.15	+0.7
3,667,975	+		LRK54_RS16735	0.15	-0.3
3,667,975	+		LRK54_RS16735	0.15	+0.1
3,667,976	-		LRK54_RS16735	0.15	-1.6
3,667,976	-		LRK54_RS16735	0.15	-1.9
3,667,976	-		LRK54_RS16735	0.15	-3.5
3,667,976	-		LRK54_RS16735	0.15	-3.2
3,667,976	-		LRK54_RS16735	0.15	-2.1
3,667,976	-		LRK54_RS16735	0.15	+0.7
3,667,976	-		LRK54_RS16735	0.15	-1.6
3,668,299	+		LRK54_RS16735	0.28	-2.1
3,668,299	+		LRK54_RS16735	0.28	-1.9
3,668,299	+		LRK54_RS16735	0.28	-1.3
3,668,299	+		LRK54_RS16735	0.28	-0.3
3,668,299	+		LRK54_RS16735	0.28	-0.3
3,668,299	+		LRK54_RS16735	0.28	-0.9
3,668,299	+		LRK54_RS16735	0.28	-0.3
3,668,299	+		LRK54_RS16735	0.28	-0.9
3,668,299	+		LRK54_RS16735	0.28	-1.1
3,668,299	+		LRK54_RS16735	0.28	-1.6
3,668,299	+		LRK54_RS16735	0.28	-1.3
3,668,299	+		LRK54_RS16735	0.28	-1.3
3,668,300	-		LRK54_RS16735	0.28	-0.9
3,668,300	-		LRK54_RS16735	0.28	-1.9
3,668,300	-		LRK54_RS16735	0.28	+0.7
3,668,300	-		LRK54_RS16735	0.28	-0.3
3,668,300	-		LRK54_RS16735	0.28	-1.6
3,668,300	-		LRK54_RS16735	0.28	-0.0
3,668,300	-		LRK54_RS16735	0.28	-0.9
3,668,302	+		LRK54_RS16735	0.28	-1.3
3,668,302	+		LRK54_RS16735	0.28	-1.6
3,668,302	+		LRK54_RS16735	0.28	-2.3
3,668,302	+		LRK54_RS16735	0.28	+0.7
3,668,302	+		LRK54_RS16735	0.28	-3.0
3,668,302	+		LRK54_RS16735	0.28	-3.7
3,668,302	+		LRK54_RS16735	0.28	-2.7
3,668,302	+		LRK54_RS16735	0.28	-2.6
3,668,302	+		LRK54_RS16735	0.28	+1.7
3,668,302	+		LRK54_RS16735	0.28	-1.3
3,668,302	+		LRK54_RS16735	0.28	-2.8
3,668,302	+		LRK54_RS16735	0.28	-1.6
3,668,303	-		LRK54_RS16735	0.28	-1.9
3,668,303	-		LRK54_RS16735	0.28	-0.9
3,668,303	-		LRK54_RS16735	0.28	-2.1
3,668,303	-		LRK54_RS16735	0.28	-1.0
3,668,303	-		LRK54_RS16735	0.28	-1.6
3,668,303	-		LRK54_RS16735	0.28	-1.6
3,668,303	-		LRK54_RS16735	0.28	-1.6
3,668,303	-		LRK54_RS16735	0.28	-2.6
3,668,303	-		LRK54_RS16735	0.28	+0.7
3,668,303	-		LRK54_RS16735	0.28	-0.3