Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS16600

Experiment: R2A with SpecU metal mix 1 X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with SpecU metal mix 1 X
3,644,569	-				+0.4
3,644,569	-				-0.6
3,644,627	+				-2.3
3,644,627	+				+0.5
3,644,627	+				-0.4
3,644,627	+				-0.1
3,644,628	-				-0.3
3,644,628	-				+0.4
3,644,684	+		LRK54_RS16595	0.15	-0.9
3,644,684	+		LRK54_RS16595	0.15	-0.3
3,644,684	+		LRK54_RS16595	0.15	-0.3
3,644,684	+		LRK54_RS16595	0.15	+1.7
3,644,684	+		LRK54_RS16595	0.15	+1.7
3,644,684	+		LRK54_RS16595	0.15	+0.1
3,644,684	+		LRK54_RS16595	0.15	-0.2
3,644,684	+		LRK54_RS16595	0.15	+1.0
3,644,684	+		LRK54_RS16595	0.15	-0.5
3,644,684	+		LRK54_RS16595	0.15	+0.2
3,644,684	+		LRK54_RS16595	0.15	+0.0
3,644,684	+		LRK54_RS16595	0.15	-0.2
3,644,684	+		LRK54_RS16595	0.15	-0.1
3,644,684	+		LRK54_RS16595	0.15	-0.8
3,644,684	+		LRK54_RS16595	0.15	-0.3
3,644,684	+		LRK54_RS16595	0.15	+0.2
3,644,684	+		LRK54_RS16595	0.15	+2.3
3,644,684	+		LRK54_RS16595	0.15	-1.3
3,644,684	+		LRK54_RS16595	0.15	-0.5
3,644,684	+		LRK54_RS16595	0.15	-1.7
3,644,684	+		LRK54_RS16595	0.15	-0.0
3,644,684	+		LRK54_RS16595	0.15	-0.7
3,644,684	+		LRK54_RS16595	0.15	+0.6
3,644,684	+		LRK54_RS16595	0.15	-1.2
3,644,684	+		LRK54_RS16595	0.15	+0.5
3,644,684	+		LRK54_RS16595	0.15	+1.0
3,644,684	+		LRK54_RS16595	0.15	-0.4
3,644,684	+		LRK54_RS16595	0.15	-0.1
3,644,684	+		LRK54_RS16595	0.15	+1.7
3,644,684	+		LRK54_RS16595	0.15	-0.3
3,644,684	+		LRK54_RS16595	0.15	+0.4
3,644,684	+		LRK54_RS16595	0.15	-0.1
3,644,684	+		LRK54_RS16595	0.15	-0.7
3,644,684	+		LRK54_RS16595	0.15	-0.5
3,644,685	-		LRK54_RS16595	0.15	+0.7
3,644,685	-		LRK54_RS16595	0.15	+0.1
3,644,685	-		LRK54_RS16595	0.15	-0.5
3,644,685	-				+0.7
3,644,685	-		LRK54_RS16595	0.15	-0.9
3,644,685	-		LRK54_RS16595	0.15	+0.2
3,644,685	-		LRK54_RS16595	0.15	+0.9
3,644,685	-		LRK54_RS16595	0.15	-0.7
3,644,685	-		LRK54_RS16595	0.15	+0.2
3,644,685	-		LRK54_RS16595	0.15	-0.4
3,644,685	-		LRK54_RS16595	0.15	-1.9
3,644,685	-		LRK54_RS16595	0.15	+0.4
3,644,685	-		LRK54_RS16595	0.15	+0.6
3,644,685	-		LRK54_RS16595	0.15	+0.3
3,644,685	-		LRK54_RS16595	0.15	-1.3
3,644,685	-		LRK54_RS16595	0.15	-1.3
3,644,685	-		LRK54_RS16595	0.15	-1.3
3,644,685	-		LRK54_RS16595	0.15	+0.1
3,644,685	-		LRK54_RS16595	0.15	+0.4
3,644,685	-		LRK54_RS16595	0.15	+0.7
3,644,685	-		LRK54_RS16595	0.15	+0.0
3,644,685	-		LRK54_RS16595	0.15	-0.9
3,644,685	-		LRK54_RS16595	0.15	-0.9
3,644,685	-		LRK54_RS16595	0.15	-0.2
3,644,685	-		LRK54_RS16595	0.15	+1.1
3,644,685	-		LRK54_RS16595	0.15	-0.4
3,644,685	-		LRK54_RS16595	0.15	+0.7
3,644,685	-		LRK54_RS16595	0.15	+0.7
3,644,685	-		LRK54_RS16595	0.15	+0.3
3,644,685	-		LRK54_RS16595	0.15	-0.5
3,644,685	-		LRK54_RS16595	0.15	-0.9
3,644,685	-		LRK54_RS16595	0.15	-1.3
3,644,685	-		LRK54_RS16595	0.15	+0.2
3,644,685	-		LRK54_RS16595	0.15	-0.7
3,644,685	-		LRK54_RS16595	0.15	-0.3
3,644,861	+		LRK54_RS16595	0.33	-0.5
3,644,862	-		LRK54_RS16595	0.33	+0.1
3,644,945	+		LRK54_RS16595	0.42	+3.3
3,644,945	+		LRK54_RS16595	0.42	+0.2
3,644,945	+		LRK54_RS16595	0.42	+0.8
3,644,945	+		LRK54_RS16595	0.42	+2.1
3,644,945	+		LRK54_RS16595	0.42	+0.6
3,644,946	-		LRK54_RS16595	0.42	+0.8
3,644,946	-		LRK54_RS16595	0.42	-0.0
3,644,946	-		LRK54_RS16595	0.42	-1.2
3,644,946	-		LRK54_RS16595	0.42	+1.0
3,644,946	-		LRK54_RS16595	0.42	-1.5
3,644,946	-		LRK54_RS16595	0.42	-0.3
3,644,946	-		LRK54_RS16595	0.42	+1.4
3,644,946	-		LRK54_RS16595	0.42	-0.8
3,645,288	+		LRK54_RS16595	0.78	-0.6
3,645,288	+		LRK54_RS16595	0.78	+0.1
3,645,289	-		LRK54_RS16595	0.78	-0.3
3,645,317	+		LRK54_RS16595	0.81	+0.2
3,645,317	+		LRK54_RS16595	0.81	+0.2
3,645,317	+		LRK54_RS16595	0.81	-1.0
3,645,317	+		LRK54_RS16595	0.81	-1.0
3,645,318	-		LRK54_RS16595	0.81	-0.2
3,645,318	-		LRK54_RS16595	0.81	+0.4
3,645,318	-		LRK54_RS16595	0.81	+0.9
3,645,318	-		LRK54_RS16595	0.81	+0.6
3,645,318	-		LRK54_RS16595	0.81	+0.7
3,645,318	-		LRK54_RS16595	0.81	-0.0
3,645,318	-		LRK54_RS16595	0.81	-1.2
3,645,434	+				-1.5
3,645,435	-				+0.7
3,645,435	-				-0.9
3,645,446	+				-0.2
3,645,446	+				+2.7
3,645,446	+				-0.6
3,645,446	+				+0.4
3,645,446	+				-0.0
3,645,446	+				-0.6
3,645,446	+				-0.1
3,645,446	+				+0.0
3,645,446	+				+0.5
3,645,447	-				-0.4
3,645,447	-				+0.1
3,645,447	-				-0.1
3,645,447	-				+0.7
3,645,447	-				+0.5
3,645,447	-				-0.8
3,645,447	-				+0.3
3,645,447	-				+0.7
3,645,447	-				-0.9
3,645,447	-				+0.7
3,645,566	+				+0.6
3,645,566	+				-0.9
3,645,566	+				+0.2
3,645,566	+				+2.3
3,645,566	+				+0.2
3,645,566	+				-1.6
3,645,566	+				+0.7
3,645,566	+				+0.4
3,645,566	+				-0.1
3,645,566	+				-0.5
3,645,566	+				-1.1
3,645,566	+				+0.7
3,645,567	-				-0.2
3,645,567	-				+0.1
3,645,567	-				+1.7
3,645,567	-				+1.4
3,645,567	-				+0.0
3,645,567	-				+0.1
3,645,567	-				-0.7
3,645,567	-				+1.3
3,645,567	-				+0.7
3,645,567	-				-2.1
3,645,567	-				-0.5
3,645,567	-				+0.7
3,645,567	-				+0.2
3,645,567	-				+0.7
3,645,567	-				-1.4
3,645,650	+				+1.1
3,645,650	+				+1.1
3,645,651	-				-0.5
3,645,651	-				+0.4
3,645,651	-				-1.1
3,645,824	+		LRK54_RS16600	0.14	-1.1
3,645,824	+		LRK54_RS16600	0.14	-0.3
3,645,824	+		LRK54_RS16600	0.14	-1.4
3,645,824	+		LRK54_RS16600	0.14	-1.3
3,645,824	+		LRK54_RS16600	0.14	-2.3
3,645,824	+		LRK54_RS16600	0.14	-1.3
3,645,824	+		LRK54_RS16600	0.14	-0.9
3,645,824	+		LRK54_RS16600	0.14	-1.3
3,645,824	+		LRK54_RS16600	0.14	-0.3
3,645,824	+		LRK54_RS16600	0.14	-0.7
3,645,824	+		LRK54_RS16600	0.14	-0.3
3,645,824	+		LRK54_RS16600	0.14	-1.3
3,645,824	+		LRK54_RS16600	0.14	-1.3
3,645,824	+		LRK54_RS16600	0.14	-0.3
3,645,824	+		LRK54_RS16600	0.14	-0.9
3,645,824	+		LRK54_RS16600	0.14	-1.2
3,645,824	+		LRK54_RS16600	0.14	+0.7
3,645,824	+		LRK54_RS16600	0.14	-0.5
3,645,824	+		LRK54_RS16600	0.14	+0.9
3,645,824	+		LRK54_RS16600	0.14	-2.2
3,645,824	+		LRK54_RS16600	0.14	-0.3
3,645,824	+		LRK54_RS16600	0.14	-0.9
3,645,825	-		LRK54_RS16600	0.14	-1.3
3,645,825	-		LRK54_RS16600	0.14	-0.8
3,645,825	-		LRK54_RS16600	0.14	-0.9
3,645,825	-		LRK54_RS16600	0.14	-0.3
3,645,825	-		LRK54_RS16600	0.14	-2.0
3,645,825	-		LRK54_RS16600	0.14	-1.3
3,645,825	-		LRK54_RS16600	0.14	+0.7
3,645,825	-		LRK54_RS16600	0.14	-1.0
3,645,825	-		LRK54_RS16600	0.14	+0.1
3,645,825	-		LRK54_RS16600	0.14	-2.9
3,645,825	-		LRK54_RS16600	0.14	-0.2
3,645,825	-		LRK54_RS16600	0.14	+1.2
3,645,825	-		LRK54_RS16600	0.14	-1.4
3,645,825	-		LRK54_RS16600	0.14	-1.3
3,645,825	-		LRK54_RS16600	0.14	-1.4
3,645,825	-		LRK54_RS16600	0.14	-0.1
3,645,825	-		LRK54_RS16600	0.14	-0.3
3,645,825	-		LRK54_RS16600	0.14	-0.9
3,645,932	+		LRK54_RS16600	0.20	-1.7
3,645,932	+		LRK54_RS16600	0.20	-2.1
3,645,932	+		LRK54_RS16600	0.20	-1.0
3,645,933	-		LRK54_RS16600	0.20	-1.2
3,645,933	-		LRK54_RS16600	0.20	-1.3
3,645,933	-		LRK54_RS16600	0.20	-0.5
3,645,933	-		LRK54_RS16600	0.20	-0.5
3,645,933	-		LRK54_RS16600	0.20	-0.5
3,645,933	-		LRK54_RS16600	0.20	-3.4
3,645,962	+		LRK54_RS16600	0.22	-2.1
3,645,962	+		LRK54_RS16600	0.22	+0.2
3,645,963	-		LRK54_RS16600	0.22	-2.1
3,645,963	-		LRK54_RS16600	0.22	-0.8
3,645,963	-		LRK54_RS16600	0.22	-1.1
3,645,963	-		LRK54_RS16600	0.22	-1.4
3,646,151	+		LRK54_RS16600	0.33	+1.7
3,646,151	+		LRK54_RS16600	0.33	-1.6
3,646,151	+		LRK54_RS16600	0.33	-2.4
3,646,151	+		LRK54_RS16600	0.33	-2.6
3,646,151	+		LRK54_RS16600	0.33	+2.7
3,646,151	+		LRK54_RS16600	0.33	-2.5
3,646,151	+		LRK54_RS16600	0.33	-1.2
3,646,152	-		LRK54_RS16600	0.33	-2.5
3,646,152	-		LRK54_RS16600	0.33	-1.5
3,646,152	-		LRK54_RS16600	0.33	-0.7
3,646,152	-		LRK54_RS16600	0.33	-1.3
3,646,152	-		LRK54_RS16600	0.33	-0.3
3,646,224	-		LRK54_RS16600	0.37	-2.1
3,646,601	+		LRK54_RS16600	0.58	-0.3
3,646,601	+		LRK54_RS16600	0.58	-0.3
3,646,601	+		LRK54_RS16600	0.58	+0.5
3,646,601	+		LRK54_RS16600	0.58	-0.8
3,646,602	-		LRK54_RS16600	0.58	-0.7
3,647,150	+		LRK54_RS16600	0.88	-3.1
3,647,150	+		LRK54_RS16600	0.88	-2.4
3,647,150	+		LRK54_RS16600	0.88	-0.5
3,647,150	+		LRK54_RS16600	0.88	-0.3
3,647,150	+		LRK54_RS16600	0.88	-1.5
3,647,150	+		LRK54_RS16600	0.88	-0.3
3,647,150	+		LRK54_RS16600	0.88	-0.3
3,647,150	+		LRK54_RS16600	0.88	-0.3
3,647,150	+		LRK54_RS16600	0.88	-1.7
3,647,151	-		LRK54_RS16600	0.88	-1.6
3,647,151	-		LRK54_RS16600	0.88	-0.3
3,647,151	-		LRK54_RS16600	0.88	+0.1
3,647,151	-		LRK54_RS16600	0.88	-2.1
3,647,151	-		LRK54_RS16600	0.88	-0.3
3,647,258	+				+0.7
3,647,258	+				-1.6
3,647,258	+				-1.3
3,647,258	+				-1.0
3,647,258	+				-0.3
3,647,258	+				-1.3
3,647,258	+				+1.1
3,647,259	-				-1.1
3,647,259	-				-0.3
3,647,259	-				-1.3
3,647,259	-				+0.7
3,647,259	-				-0.1
3,647,259	-				-1.6
3,647,259	-				+0.4
3,647,259	-				-1.9
3,647,259	-				-1.8
3,647,259	-				-0.9
3,647,259	-				-1.1
3,647,375	+				-0.2
3,647,375	+				-1.6
3,647,375	+				-0.0
3,647,375	+				-0.2
3,647,375	+				+0.7
3,647,375	+				+0.2
3,647,375	+				-1.5
3,647,375	+				-0.3
3,647,375	+				+0.4
3,647,375	+				-0.4
3,647,375	+				-0.1
3,647,375	+				-0.1
3,647,375	+				-0.6
3,647,375	+				-0.0
3,647,375	+				-0.9
3,647,375	+				-0.9
3,647,375	+				-1.9
3,647,375	+				-0.3
3,647,375	+				-0.5
3,647,376	-				+0.7
3,647,376	-				-1.2
3,647,376	-				+0.2
3,647,376	-				-1.6
3,647,376	-				+0.3
3,647,376	-				-0.6
3,647,376	-				+0.1
3,647,376	-				+1.0
3,647,376	-				-0.9
3,647,376	-				-1.3
3,647,376	-				-0.7
3,647,376	-				-1.1
3,647,376	-				-0.9
3,647,376	-				-1.1
3,647,376	-				+0.9
3,647,376	-				-1.6
3,647,376	-				-1.3
3,647,376	-				+1.3
3,647,376	-				+1.5
3,647,376	-				-0.1
3,647,376	-				+0.7
3,647,376	-				+0.1
3,647,376	-				-0.8
3,647,376	-				-0.1
3,647,477	+				-1.1
3,647,477	+				+0.3