Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS15935

Experiment: R2A with SpecU metal mix 1 X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with SpecU metal mix 1 X
3,508,471	+		LRK54_RS15930	0.50	+0.8
3,508,471	+		LRK54_RS15930	0.50	+0.5
3,508,471	+		LRK54_RS15930	0.50	+1.2
3,508,471	+		LRK54_RS15930	0.50	+0.1
3,508,472	-		LRK54_RS15930	0.50	+0.5
3,508,472	-		LRK54_RS15930	0.50	+0.4
3,508,472	-		LRK54_RS15930	0.50	-0.9
3,508,472	-		LRK54_RS15930	0.50	+1.2
3,508,472	-		LRK54_RS15930	0.50	+0.3
3,508,472	-		LRK54_RS15930	0.50	-0.3
3,508,591	+		LRK54_RS15930	0.61	+0.5
3,508,591	+		LRK54_RS15930	0.61	+1.1
3,508,591	+		LRK54_RS15930	0.61	+0.6
3,508,591	+		LRK54_RS15930	0.61	-0.8
3,508,645	+		LRK54_RS15930	0.66	+1.4
3,508,645	+		LRK54_RS15930	0.66	+0.9
3,508,645	+		LRK54_RS15930	0.66	+0.8
3,508,645	+		LRK54_RS15930	0.66	+0.9
3,508,645	+		LRK54_RS15930	0.66	+0.2
3,508,645	+		LRK54_RS15930	0.66	+1.0
3,508,645	+		LRK54_RS15930	0.66	+0.9
3,508,646	-		LRK54_RS15930	0.66	+0.1
3,508,646	-		LRK54_RS15930	0.66	-0.1
3,508,646	-		LRK54_RS15930	0.66	+0.3
3,508,646	-		LRK54_RS15930	0.66	+0.9
3,508,646	-		LRK54_RS15930	0.66	+0.4
3,508,741	+		LRK54_RS15930	0.75	+0.9
3,508,741	+		LRK54_RS15930	0.75	+2.7
3,508,741	+		LRK54_RS15930	0.75	+0.4
3,508,741	+		LRK54_RS15930	0.75	+0.2
3,508,741	+		LRK54_RS15930	0.75	+0.5
3,508,741	+		LRK54_RS15930	0.75	+1.5
3,508,741	+		LRK54_RS15930	0.75	+1.3
3,508,741	+		LRK54_RS15930	0.75	+0.6
3,508,741	+		LRK54_RS15930	0.75	+0.6
3,508,741	+		LRK54_RS15930	0.75	+0.6
3,508,741	+		LRK54_RS15930	0.75	+1.3
3,508,741	+		LRK54_RS15930	0.75	-0.2
3,508,742	-		LRK54_RS15930	0.75	-0.1
3,508,742	-		LRK54_RS15930	0.75	-0.3
3,508,742	-		LRK54_RS15930	0.75	+0.2
3,508,742	-		LRK54_RS15930	0.75	+1.8
3,508,742	-		LRK54_RS15930	0.75	+2.0
3,508,742	-		LRK54_RS15930	0.75	-0.1
3,508,742	-		LRK54_RS15930	0.75	+0.5
3,508,742	-		LRK54_RS15930	0.75	+1.2
3,508,742	-		LRK54_RS15930	0.75	+1.5
3,508,742	-		LRK54_RS15930	0.75	+1.1
3,508,742	-		LRK54_RS15930	0.75	+0.3
3,508,742	-		LRK54_RS15930	0.75	+1.8
3,508,742	-		LRK54_RS15930	0.75	+0.9
3,508,742	-		LRK54_RS15930	0.75	+0.2
3,508,742	-		LRK54_RS15930	0.75	+0.8
3,508,742	-		LRK54_RS15930	0.75	+1.5
3,508,742	-		LRK54_RS15930	0.75	+1.8
3,508,742	-		LRK54_RS15930	0.75	+0.7
3,508,742	-		LRK54_RS15930	0.75	+0.9
3,508,742	-		LRK54_RS15930	0.75	+0.4
3,508,771	+		LRK54_RS15930	0.78	+1.0
3,508,771	+		LRK54_RS15930	0.78	+1.0
3,508,772	-		LRK54_RS15930	0.78	+0.3
3,508,772	-		LRK54_RS15930	0.78	+0.7
3,508,772	-		LRK54_RS15930	0.78	-0.1
3,509,037	+				-1.4
3,509,038	-				-1.2
3,509,038	-				-1.2
3,509,109	+		LRK54_RS15935	0.15	-1.0
3,509,109	+		LRK54_RS15935	0.15	-0.9
3,509,109	+		LRK54_RS15935	0.15	-0.9
3,509,109	+		LRK54_RS15935	0.15	-0.5
3,509,109	+		LRK54_RS15935	0.15	-1.1
3,509,109	+		LRK54_RS15935	0.15	-1.9
3,509,110	-		LRK54_RS15935	0.15	-0.3
3,509,130	+		LRK54_RS15935	0.18	-0.8
3,509,130	+		LRK54_RS15935	0.18	+0.7
3,509,131	-		LRK54_RS15935	0.18	-2.2
3,509,131	-		LRK54_RS15935	0.18	+0.0
3,509,131	-		LRK54_RS15935	0.18	-1.6
3,509,131	-		LRK54_RS15935	0.18	-0.5
3,509,244	+		LRK54_RS15935	0.34	+0.7
3,509,244	+		LRK54_RS15935	0.34	-2.9
3,509,244	+		LRK54_RS15935	0.34	+0.1
3,509,244	+		LRK54_RS15935	0.34	-1.8
3,509,244	+		LRK54_RS15935	0.34	+0.7
3,509,244	+		LRK54_RS15935	0.34	-1.3
3,509,244	+		LRK54_RS15935	0.34	-2.3
3,509,244	+		LRK54_RS15935	0.34	+0.0
3,509,244	+		LRK54_RS15935	0.34	-1.3
3,509,245	-		LRK54_RS15935	0.34	-4.0
3,509,245	-		LRK54_RS15935	0.34	-1.9
3,509,245	-		LRK54_RS15935	0.34	-1.9
3,509,245	-		LRK54_RS15935	0.34	-3.6
3,509,245	-		LRK54_RS15935	0.34	-1.9
3,509,265	+		LRK54_RS15935	0.37	-0.9
3,509,265	+		LRK54_RS15935	0.37	-0.8
3,509,265	+		LRK54_RS15935	0.37	-1.9
3,509,265	+		LRK54_RS15935	0.37	+0.3
3,509,265	+		LRK54_RS15935	0.37	+1.7
3,509,266	-		LRK54_RS15935	0.37	-1.9
3,509,266	-		LRK54_RS15935	0.37	+0.7
3,509,266	-		LRK54_RS15935	0.37	-0.9
3,509,397	+		LRK54_RS15935	0.56	-0.8
3,509,397	+		LRK54_RS15935	0.56	+1.1
3,509,397	+		LRK54_RS15935	0.56	+1.1
3,509,397	+		LRK54_RS15935	0.56	-1.2
3,509,397	+		LRK54_RS15935	0.56	+0.7
3,509,397	+		LRK54_RS15935	0.56	-1.3
3,509,397	+		LRK54_RS15935	0.56	-0.9
3,509,397	+		LRK54_RS15935	0.56	-0.9
3,509,397	+		LRK54_RS15935	0.56	-1.6
3,509,397	+		LRK54_RS15935	0.56	+0.7
3,509,397	+		LRK54_RS15935	0.56	+0.1
3,509,397	+		LRK54_RS15935	0.56	-1.2
3,509,397	+		LRK54_RS15935	0.56	-0.9
3,509,397	+		LRK54_RS15935	0.56	-1.1
3,509,397	+		LRK54_RS15935	0.56	-1.1
3,509,397	+		LRK54_RS15935	0.56	-0.9
3,509,397	+		LRK54_RS15935	0.56	-2.5
3,509,397	+		LRK54_RS15935	0.56	-0.7
3,509,397	+		LRK54_RS15935	0.56	-1.1
3,509,398	-		LRK54_RS15935	0.56	-1.6
3,509,398	-		LRK54_RS15935	0.56	-2.1
3,509,398	-		LRK54_RS15935	0.56	-1.0
3,509,398	-		LRK54_RS15935	0.56	-1.6
3,509,398	-		LRK54_RS15935	0.56	-2.5
3,509,398	-		LRK54_RS15935	0.56	-1.3
3,509,398	-		LRK54_RS15935	0.56	-2.5
3,509,398	-		LRK54_RS15935	0.56	-0.9
3,509,398	-		LRK54_RS15935	0.56	-0.6
3,509,398	-		LRK54_RS15935	0.56	-0.9
3,509,398	-		LRK54_RS15935	0.56	-2.4
3,509,398	-		LRK54_RS15935	0.56	+1.1
3,509,398	-		LRK54_RS15935	0.56	-1.5
3,509,398	-		LRK54_RS15935	0.56	-0.7
3,509,398	-		LRK54_RS15935	0.56	-0.3
3,509,456	+		LRK54_RS15935	0.64	+0.5
3,509,456	+		LRK54_RS15935	0.64	-3.0
3,509,456	+		LRK54_RS15935	0.64	+1.3
3,509,456	+		LRK54_RS15935	0.64	-2.6
3,509,456	+		LRK54_RS15935	0.64	+0.3
3,509,456	+		LRK54_RS15935	0.64	-1.3
3,509,703	+				-0.1
3,509,714	+				+0.3
3,509,714	+				+1.2
3,509,714	+				+0.4
3,509,714	+				-1.1
3,509,714	+				+0.3
3,509,714	+				+2.3
3,509,714	+				-0.2
3,509,714	+				+0.0
3,509,714	+				+1.5
3,509,714	+				+0.1
3,509,714	+				+0.9
3,509,714	+				+0.3
3,509,714	+				-1.3
3,509,714	+				+0.3
3,509,714	+				-0.5
3,509,714	+				+0.2
3,509,714	+				+1.3
3,509,714	+				+0.1
3,509,714	+				-0.7
3,509,714	+				-0.3
3,509,714	+				-0.3
3,509,715	-				-0.6
3,509,715	-				+0.7
3,509,715	-				+0.0
3,509,715	-				+0.1
3,509,715	-				+0.2
3,509,715	-				+1.3
3,509,715	-				-0.3
3,509,715	-				-0.4
3,509,715	-				+0.9
3,509,715	-				+0.1
3,509,715	-				-0.3
3,509,715	-				-0.7
3,509,715	-				-0.1
3,509,715	-				+0.1
3,509,715	-				-0.4
3,509,715	-				+0.4
3,509,785	-		LRK54_RS15940	0.22	+0.6
3,509,785	-		LRK54_RS15940	0.22	-0.2
3,509,825	+		LRK54_RS15940	0.34	+2.3
3,509,825	+		LRK54_RS15940	0.34	-1.5
3,509,825	+		LRK54_RS15940	0.34	+1.7
3,509,825	+		LRK54_RS15940	0.34	+0.7
3,509,825	+		LRK54_RS15940	0.34	+0.7
3,509,825	+		LRK54_RS15940	0.34	-0.9
3,509,825	+		LRK54_RS15940	0.34	+2.0
3,509,825	+		LRK54_RS15940	0.34	-0.2
3,509,825	+		LRK54_RS15940	0.34	+0.5
3,509,825	+		LRK54_RS15940	0.34	+1.7
3,509,825	+		LRK54_RS15940	0.34	+0.1
3,509,826	-		LRK54_RS15940	0.34	-1.6
3,509,826	-		LRK54_RS15940	0.34	-0.2
3,509,826	-		LRK54_RS15940	0.34	+0.4
3,509,826	-		LRK54_RS15940	0.34	+2.3
3,509,826	-		LRK54_RS15940	0.34	+0.5
3,509,826	-		LRK54_RS15940	0.34	+0.2
3,509,826	-		LRK54_RS15940	0.34	+0.7
3,509,826	-		LRK54_RS15940	0.34	-0.6
3,509,826	-		LRK54_RS15940	0.34	+2.1
3,509,826	-		LRK54_RS15940	0.34	+0.1
3,509,826	-		LRK54_RS15940	0.34	+0.3
3,509,826	-		LRK54_RS15940	0.34	-0.1
3,510,179	+		LRK54_RS15945	0.13	-0.1
3,510,179	+		LRK54_RS15945	0.13	+2.3
3,510,179	+		LRK54_RS15945	0.13	-0.3
3,510,179	+		LRK54_RS15945	0.13	-0.5
3,510,180	-		LRK54_RS15945	0.13	-0.8
3,510,180	-		LRK54_RS15945	0.13	+0.2
3,510,180	-		LRK54_RS15945	0.13	-0.8
3,510,180	-		LRK54_RS15945	0.13	+1.3
3,510,255	-		LRK54_RS15945	0.26	+0.4
3,510,311	+		LRK54_RS15945	0.35	+0.4
3,510,312	-		LRK54_RS15945	0.35	+2.3
3,510,312	-		LRK54_RS15945	0.35	-1.9
3,510,397	+		LRK54_RS15945	0.50	-0.3
3,510,398	+		LRK54_RS15945	0.50	+0.0
3,510,398	+		LRK54_RS15945	0.50	-0.1
3,510,398	+		LRK54_RS15945	0.50	-0.0
3,510,398	+		LRK54_RS15945	0.50	-1.9
3,510,398	+		LRK54_RS15945	0.50	+0.3
3,510,398	+		LRK54_RS15945	0.50	-0.1
3,510,398	+		LRK54_RS15945	0.50	+1.2
3,510,398	+		LRK54_RS15945	0.50	+0.3
3,510,398	+		LRK54_RS15945	0.50	-0.3
3,510,398	+		LRK54_RS15945	0.50	-0.1
3,510,398	+		LRK54_RS15945	0.50	+0.1
3,510,399	-		LRK54_RS15945	0.50	-0.3
3,510,399	-		LRK54_RS15945	0.50	+1.0
3,510,399	-		LRK54_RS15945	0.50	+0.1
3,510,399	-		LRK54_RS15945	0.50	+0.7
3,510,399	-		LRK54_RS15945	0.50	-1.8
3,510,399	-		LRK54_RS15945	0.50	+0.4
3,510,436	+		LRK54_RS15945	0.56	-0.7
3,510,436	+		LRK54_RS15945	0.56	-1.5
3,510,436	+		LRK54_RS15945	0.56	-1.1
3,510,436	+		LRK54_RS15945	0.56	+0.2
3,510,436	+		LRK54_RS15945	0.56	+0.1
3,510,436	+		LRK54_RS15945	0.56	+0.3
3,510,436	+		LRK54_RS15945	0.56	+0.1
3,510,437	-		LRK54_RS15945	0.57	-0.1
3,510,437	-		LRK54_RS15945	0.57	-1.3
3,510,437	-		LRK54_RS15945	0.57	-0.3
3,510,437	-		LRK54_RS15945	0.57	-0.2
3,510,560	+		LRK54_RS15945	0.77	-0.2
3,510,560	+		LRK54_RS15945	0.77	+0.1
3,510,560	+		LRK54_RS15945	0.77	-0.7
3,510,560	+		LRK54_RS15945	0.77	+0.3
3,510,560	+		LRK54_RS15945	0.77	+0.1
3,510,560	+		LRK54_RS15945	0.77	+0.9
3,510,560	+		LRK54_RS15945	0.77	-0.1
3,510,560	+		LRK54_RS15945	0.77	+1.3
3,510,561	-		LRK54_RS15945	0.77	-1.9
3,510,561	-		LRK54_RS15945	0.77	+1.1
3,510,561	-		LRK54_RS15945	0.77	-2.5
3,510,561	-		LRK54_RS15945	0.77	-2.3
3,510,561	-		LRK54_RS15945	0.77	-0.2
3,510,635	+				-0.6
3,510,636	-				+0.4
3,510,636	-				+0.1
3,510,636	-				-0.8
3,510,636	-				-0.1