Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS15200

Experiment: R2A with SpecU metal mix 1 X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with SpecU metal mix 1 X
3,354,020	+		LRK54_RS15190	0.88	+1.7
3,354,030	+		LRK54_RS15190	0.89	+0.7
3,354,066	+				+1.2
3,354,066	+				-0.1
3,354,066	+				+1.7
3,354,066	+				+0.2
3,354,066	+				+0.8
3,354,066	+				-2.2
3,354,066	+				+0.1
3,354,066	+				+0.9
3,354,066	+				+0.4
3,354,066	+				-0.3
3,354,066	+				+0.5
3,354,066	+				+0.1
3,354,066	+				+0.3
3,354,066	+				+0.2
3,354,066	+				-0.1
3,354,066	+				-0.3
3,354,066	+				+0.4
3,354,066	+				+0.4
3,354,066	+				-0.1
3,354,067	-				+0.2
3,354,067	-				+0.1
3,354,067	-				-1.6
3,354,067	-				+0.3
3,354,067	-				+0.1
3,354,067	-				+2.0
3,354,067	-				+0.3
3,354,067	-				-1.3
3,354,067	-				+0.1
3,354,067	-				+0.7
3,354,067	-				+0.1
3,354,067	-				+0.7
3,354,067	-				-0.1
3,354,091	-				-0.1
3,354,091	-				+0.7
3,354,227	+				+1.7
3,354,227	+				+1.2
3,354,227	+				+0.2
3,354,228	-				-2.1
3,354,228	-				-0.3
3,354,228	-				+0.6
3,354,228	-				-0.1
3,354,228	-				+0.1
3,354,228	-				-1.2
3,354,228	-				+0.0
3,354,228	-				-0.4
3,354,345	+				+0.8
3,354,346	-				+0.7
3,354,461	+		LRK54_RS15195	0.16	-0.9
3,354,461	+		LRK54_RS15195	0.16	-1.2
3,354,461	+		LRK54_RS15195	0.16	-0.3
3,354,461	+		LRK54_RS15195	0.16	+0.4
3,354,461	+		LRK54_RS15195	0.16	-0.4
3,354,461	+		LRK54_RS15195	0.16	-0.6
3,354,461	+		LRK54_RS15195	0.16	+0.9
3,354,461	+		LRK54_RS15195	0.16	-0.1
3,354,461	+		LRK54_RS15195	0.16	-1.3
3,354,461	+		LRK54_RS15195	0.16	-0.6
3,354,461	+		LRK54_RS15195	0.16	-0.3
3,354,461	+		LRK54_RS15195	0.16	-0.8
3,354,461	+		LRK54_RS15195	0.16	-0.5
3,354,461	+		LRK54_RS15195	0.16	+0.1
3,354,461	+		LRK54_RS15195	0.16	-1.1
3,354,461	+		LRK54_RS15195	0.16	-0.7
3,354,462	-		LRK54_RS15195	0.16	-0.3
3,354,462	-		LRK54_RS15195	0.16	+0.2
3,354,462	-		LRK54_RS15195	0.16	+0.1
3,354,462	-		LRK54_RS15195	0.16	-0.4
3,354,462	-		LRK54_RS15195	0.16	-0.5
3,354,462	-		LRK54_RS15195	0.16	-1.1
3,354,462	-		LRK54_RS15195	0.16	+0.7
3,354,462	-		LRK54_RS15195	0.16	-0.9
3,354,462	-		LRK54_RS15195	0.16	-1.2
3,354,462	-		LRK54_RS15195	0.16	-0.3
3,354,462	-		LRK54_RS15195	0.16	-0.1
3,354,462	-		LRK54_RS15195	0.16	+0.0
3,354,462	-		LRK54_RS15195	0.16	+0.7
3,354,462	-		LRK54_RS15195	0.16	-1.6
3,354,462	-		LRK54_RS15195	0.16	+0.5
3,354,462	-		LRK54_RS15195	0.16	-0.2
3,354,462	-		LRK54_RS15195	0.16	+0.0
3,354,462	-		LRK54_RS15195	0.16	+1.7
3,354,462	-		LRK54_RS15195	0.16	+0.2
3,354,533	+		LRK54_RS15195	0.31	-0.3
3,354,533	+		LRK54_RS15195	0.31	-0.9
3,354,533	+		LRK54_RS15195	0.31	-0.4
3,354,533	+		LRK54_RS15195	0.31	+0.7
3,354,533	+		LRK54_RS15195	0.31	-1.2
3,354,533	+		LRK54_RS15195	0.31	-0.7
3,354,533	+		LRK54_RS15195	0.31	+0.7
3,354,533	+		LRK54_RS15195	0.31	-0.9
3,354,533	+		LRK54_RS15195	0.31	-0.0
3,354,533	+		LRK54_RS15195	0.31	-1.1
3,354,533	+		LRK54_RS15195	0.31	+3.3
3,354,533	+		LRK54_RS15195	0.31	+1.1
3,354,533	+		LRK54_RS15195	0.31	-0.1
3,354,533	+		LRK54_RS15195	0.31	-1.3
3,354,533	+		LRK54_RS15195	0.31	+0.5
3,354,533	+		LRK54_RS15195	0.31	-0.1
3,354,533	+		LRK54_RS15195	0.31	+1.7
3,354,533	+		LRK54_RS15195	0.31	-1.9
3,354,533	+		LRK54_RS15195	0.31	-0.6
3,354,533	+		LRK54_RS15195	0.31	+0.4
3,354,533	+		LRK54_RS15195	0.31	+0.0
3,354,534	-		LRK54_RS15195	0.31	-0.2
3,354,534	-		LRK54_RS15195	0.31	-2.0
3,354,534	-		LRK54_RS15195	0.31	-0.2
3,354,534	-		LRK54_RS15195	0.31	+0.3
3,354,534	-		LRK54_RS15195	0.31	-0.7
3,354,534	-		LRK54_RS15195	0.31	-0.6
3,354,534	-		LRK54_RS15195	0.31	-0.1
3,354,534	-		LRK54_RS15195	0.31	+0.7
3,354,534	-		LRK54_RS15195	0.31	+0.3
3,354,534	-		LRK54_RS15195	0.31	-0.5
3,354,534	-		LRK54_RS15195	0.31	-0.3
3,354,534	-		LRK54_RS15195	0.31	+0.9
3,354,534	-		LRK54_RS15195	0.31	+0.7
3,354,534	-		LRK54_RS15195	0.31	-0.3
3,354,534	-		LRK54_RS15195	0.31	-0.5
3,354,534	-		LRK54_RS15195	0.31	+0.2
3,354,534	-		LRK54_RS15195	0.31	+0.2
3,354,534	-		LRK54_RS15195	0.31	+0.1
3,354,534	-		LRK54_RS15195	0.31	-1.0
3,354,534	-		LRK54_RS15195	0.31	+3.0
3,354,534	-		LRK54_RS15195	0.31	-1.0
3,354,534	-		LRK54_RS15195	0.31	-2.9
3,354,647	+		LRK54_RS15195	0.53	-1.3
3,354,647	+		LRK54_RS15195	0.53	+1.0
3,354,647	+		LRK54_RS15195	0.53	+0.1
3,354,647	+		LRK54_RS15195	0.53	-0.1
3,354,647	+		LRK54_RS15195	0.53	+1.7
3,354,647	+		LRK54_RS15195	0.53	-0.5
3,354,647	+		LRK54_RS15195	0.53	-0.6
3,354,647	+		LRK54_RS15195	0.53	-0.0
3,354,647	+		LRK54_RS15195	0.53	-0.1
3,354,647	+		LRK54_RS15195	0.53	+0.3
3,354,647	+		LRK54_RS15195	0.53	+1.1
3,354,647	+		LRK54_RS15195	0.53	-2.1
3,354,647	+		LRK54_RS15195	0.53	+0.2
3,354,647	+		LRK54_RS15195	0.53	-1.2
3,354,647	+		LRK54_RS15195	0.53	-0.7
3,354,647	+		LRK54_RS15195	0.53	-0.9
3,354,647	+		LRK54_RS15195	0.53	-0.5
3,354,647	+		LRK54_RS15195	0.53	-0.4
3,354,647	+		LRK54_RS15195	0.53	+0.3
3,354,648	-		LRK54_RS15195	0.53	+2.3
3,354,648	-		LRK54_RS15195	0.53	-1.1
3,354,648	-		LRK54_RS15195	0.53	+0.5
3,354,648	-		LRK54_RS15195	0.53	-0.9
3,354,648	-		LRK54_RS15195	0.53	-0.9
3,354,648	-		LRK54_RS15195	0.53	+1.3
3,354,648	-		LRK54_RS15195	0.53	-0.7
3,354,648	-		LRK54_RS15195	0.53	+1.5
3,354,648	-		LRK54_RS15195	0.53	-0.3
3,354,648	-		LRK54_RS15195	0.53	+1.3
3,354,648	-		LRK54_RS15195	0.53	-0.3
3,354,648	-		LRK54_RS15195	0.53	-0.0
3,354,648	-		LRK54_RS15195	0.53	+1.7
3,354,648	-		LRK54_RS15195	0.53	-0.9
3,354,648	-		LRK54_RS15195	0.53	-0.5
3,354,648	-		LRK54_RS15195	0.53	-0.1
3,354,648	-		LRK54_RS15195	0.53	+0.6
3,354,648	-		LRK54_RS15195	0.53	-0.3
3,354,648	-		LRK54_RS15195	0.53	+0.5
3,354,648	-		LRK54_RS15195	0.53	-0.2
3,354,648	-		LRK54_RS15195	0.53	+0.1
3,354,729	-		LRK54_RS15195	0.70	-0.1
3,354,782	+		LRK54_RS15195	0.80	+0.4
3,354,782	+		LRK54_RS15195	0.80	-0.6
3,354,782	+		LRK54_RS15195	0.80	+0.2
3,354,782	+		LRK54_RS15195	0.80	+0.4
3,354,782	+		LRK54_RS15195	0.80	+0.7
3,354,782	+		LRK54_RS15195	0.80	-0.3
3,354,782	+		LRK54_RS15195	0.80	-0.1
3,354,782	+		LRK54_RS15195	0.80	-1.3
3,354,782	+		LRK54_RS15195	0.80	+0.0
3,354,782	+		LRK54_RS15195	0.80	+1.4
3,354,782	+		LRK54_RS15195	0.80	+0.1
3,354,783	-		LRK54_RS15195	0.80	-0.2
3,354,783	-		LRK54_RS15195	0.80	-1.0
3,354,783	-		LRK54_RS15195	0.80	-1.5
3,354,783	-		LRK54_RS15195	0.80	-0.4
3,354,783	-		LRK54_RS15195	0.80	-0.5
3,354,783	-		LRK54_RS15195	0.80	+1.0
3,354,783	-		LRK54_RS15195	0.80	-0.4
3,354,783	-		LRK54_RS15195	0.80	-1.3
3,354,815	+		LRK54_RS15195	0.87	+0.4
3,354,816	-		LRK54_RS15195	0.87	-0.7
3,354,816	-		LRK54_RS15195	0.87	+0.7
3,354,818	+		LRK54_RS15195	0.87	+0.3
3,354,818	+		LRK54_RS15195	0.87	-0.0
3,354,818	+		LRK54_RS15195	0.87	+1.6
3,354,818	+		LRK54_RS15195	0.87	-1.1
3,354,818	+		LRK54_RS15195	0.87	+0.1
3,354,818	+		LRK54_RS15195	0.87	+0.1
3,354,818	+		LRK54_RS15195	0.87	-0.5
3,354,818	+		LRK54_RS15195	0.87	-0.1
3,354,819	-		LRK54_RS15195	0.88	-0.1
3,354,819	-		LRK54_RS15195	0.88	+2.6
3,354,819	-		LRK54_RS15195	0.88	+0.2
3,354,819	-		LRK54_RS15195	0.88	-0.9
3,354,819	-		LRK54_RS15195	0.88	+1.3
3,354,819	-		LRK54_RS15195	0.88	+0.0
3,354,819	-		LRK54_RS15195	0.88	-1.3
3,354,819	-		LRK54_RS15195	0.88	-1.3
3,354,819	-		LRK54_RS15195	0.88	+1.7
3,354,845	+				-0.1
3,354,845	+				+0.7
3,354,845	+				-0.7
3,354,845	+				-1.9
3,354,845	+				-0.9
3,354,845	+				+1.3
3,354,845	+				-0.9
3,354,845	+				+0.4
3,354,845	+				-0.2
3,354,845	+				-1.0
3,354,845	+				+0.3
3,354,845	+				+0.3
3,354,845	+				+0.7
3,354,845	+				+0.4
3,354,845	+				+2.3
3,354,845	+				-0.1
3,354,845	+				+0.2
3,354,845	+				-1.3
3,354,845	+				+1.0
3,354,845	+				+0.5
3,354,845	+				+0.2
3,354,845	+				+1.0
3,354,845	+				+0.3
3,354,845	+				+0.7
3,354,845	+				-0.2
3,354,845	+				-1.2
3,354,845	+				+0.1
3,354,845	+				-0.1
3,354,845	+				+0.1
3,354,845	+				+1.4
3,354,845	+				-0.6
3,354,845	+				-0.3
3,354,845	+				-2.3
3,354,845	+				+0.2
3,354,845	+				+2.9
3,354,846	-				+0.6
3,354,846	-				-1.3
3,354,846	-				+0.6
3,354,846	-				-0.8
3,354,846	-				+0.5
3,354,846	-				+0.1
3,354,846	-				+1.2
3,354,846	-				+0.1
3,354,846	-				+0.1
3,354,846	-				-1.9
3,354,846	-				-1.9
3,354,846	-				-0.1
3,354,846	-				+0.2
3,354,846	-				+0.1
3,354,846	-				+1.5
3,354,846	-				+0.4
3,354,846	-				+0.7
3,354,846	-				+0.5
3,354,846	-				+0.2
3,354,846	-				-0.0
3,354,846	-				+0.7
3,354,846	-				+0.1
3,354,846	-				-0.3
3,354,846	-				+2.1
3,354,846	-				+0.2
3,354,846	-				-1.1
3,354,846	-				+0.7
3,354,846	-				+0.2
3,354,846	-				-2.0
3,354,846	-				+1.8
3,354,965	+		LRK54_RS15200	0.14	+0.5
3,354,965	+		LRK54_RS15200	0.14	-0.2
3,354,965	+		LRK54_RS15200	0.14	-1.1
3,354,966	-		LRK54_RS15200	0.14	-0.9
3,354,966	-		LRK54_RS15200	0.14	+0.3
3,354,966	-		LRK54_RS15200	0.14	-0.6
3,354,966	-		LRK54_RS15200	0.14	+1.7
3,354,966	-		LRK54_RS15200	0.14	+0.2
3,355,524	+				-0.1
3,355,525	-				+0.3
3,355,614	+		LRK54_RS15205	0.20	+1.7
3,355,614	+		LRK54_RS15205	0.20	+2.1
3,355,614	+		LRK54_RS15205	0.20	-0.2
3,355,615	-		LRK54_RS15205	0.20	+0.5
3,355,615	-		LRK54_RS15205	0.20	-1.2
3,355,615	-		LRK54_RS15205	0.20	-2.3
3,355,615	-		LRK54_RS15205	0.20	+0.7
3,355,615	-		LRK54_RS15205	0.20	-1.3
3,355,615	-		LRK54_RS15205	0.20	-1.3
3,355,615	-		LRK54_RS15205	0.20	+0.7
3,355,615	-		LRK54_RS15205	0.20	+0.6
3,355,615	-		LRK54_RS15205	0.20	-0.2
3,355,615	-		LRK54_RS15205	0.20	+1.4
3,355,615	-		LRK54_RS15205	0.20	-0.3
3,355,615	-		LRK54_RS15205	0.20	+0.7
3,355,615	-		LRK54_RS15205	0.20	+1.0
3,355,615	-		LRK54_RS15205	0.20	-0.2
3,355,734	+		LRK54_RS15205	0.46	+1.7
3,355,734	+		LRK54_RS15205	0.46	+0.3
3,355,734	+		LRK54_RS15205	0.46	-0.2
3,355,734	+		LRK54_RS15205	0.46	-1.9
3,355,735	-		LRK54_RS15205	0.46	+0.2
3,355,735	-		LRK54_RS15205	0.46	-0.3
3,355,735	-		LRK54_RS15205	0.46	+0.3
3,355,735	-		LRK54_RS15205	0.46	+0.3
3,355,735	-		LRK54_RS15205	0.46	-1.1
3,355,735	-		LRK54_RS15205	0.46	+0.7
3,355,735	-		LRK54_RS15205	0.46	-0.3
3,355,735	-		LRK54_RS15205	0.46	-0.5
3,355,793	+		LRK54_RS15205	0.58	+0.3
3,355,793	+		LRK54_RS15205	0.58	+1.2
3,355,793	+		LRK54_RS15205	0.58	+0.7
3,355,793	+		LRK54_RS15205	0.58	+0.4
3,355,793	+		LRK54_RS15205	0.58	+0.3
3,355,793	+		LRK54_RS15205	0.58	-1.3
3,355,793	+		LRK54_RS15205	0.58	+0.4
3,355,793	+		LRK54_RS15205	0.58	-1.0
3,355,794	-		LRK54_RS15205	0.59	-0.4
3,355,794	-		LRK54_RS15205	0.59	-0.0
3,355,794	-		LRK54_RS15205	0.59	+0.7
3,355,794	-		LRK54_RS15205	0.59	+1.1
3,355,794	-		LRK54_RS15205	0.59	-1.6
3,355,794	-		LRK54_RS15205	0.59	+0.7
3,355,794	-		LRK54_RS15205	0.59	+0.4
3,355,794	-		LRK54_RS15205	0.59	-1.1
3,355,794	-		LRK54_RS15205	0.59	+0.7
3,355,794	-		LRK54_RS15205	0.59	-0.3
3,355,794	-		LRK54_RS15205	0.59	-0.1
3,355,794	-		LRK54_RS15205	0.59	-1.4
3,355,830	+		LRK54_RS15205	0.66	-0.1
3,355,830	+		LRK54_RS15205	0.66	+1.5
3,355,830	+		LRK54_RS15205	0.66	-0.2
3,355,830	+		LRK54_RS15205	0.66	+0.7
3,355,830	+		LRK54_RS15205	0.66	+0.2
3,355,830	+		LRK54_RS15205	0.66	+0.7
3,355,830	+		LRK54_RS15205	0.66	-0.7
3,355,830	+		LRK54_RS15205	0.66	-0.8
3,355,830	+		LRK54_RS15205	0.66	-0.7
3,355,830	+		LRK54_RS15205	0.66	+0.2
3,355,830	+		LRK54_RS15205	0.66	-0.5
3,355,831	-		LRK54_RS15205	0.67	-0.3
3,355,831	-		LRK54_RS15205	0.67	-1.1
3,355,831	-		LRK54_RS15205	0.67	-0.2
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