Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS15030

Experiment: R2A with SpecU metal mix 1 X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with SpecU metal mix 1 X
3,323,241	+		LRK54_RS15025	0.49	-1.8
3,323,241	+		LRK54_RS15025	0.49	-0.1
3,323,242	-		LRK54_RS15025	0.49	-0.4
3,323,898	+				+0.0
3,323,898	+				-0.5
3,323,898	+				+0.5
3,323,898	+				-1.1
3,323,898	+				-2.1
3,323,899	-				-0.3
3,323,899	-				-0.1
3,323,899	-				-0.3
3,323,899	-				+0.3
3,323,899	-				+0.1
3,323,899	-				-0.5
3,323,899	-				-1.5
3,323,899	-				+0.1
3,323,899	-				+2.3
3,323,899	-				-1.3
3,323,899	-				+0.3
3,323,899	-				-0.8
3,323,899	-				-0.1
3,323,899	-				+0.9
3,323,899	-				-0.7
3,323,899	-				-1.3
3,323,899	-				-0.3
3,324,082	+		LRK54_RS15030	0.18	-2.2
3,324,082	+		LRK54_RS15030	0.18	-1.4
3,324,082	+		LRK54_RS15030	0.18	-1.3
3,324,082	+		LRK54_RS15030	0.18	-1.2
3,324,082	+		LRK54_RS15030	0.18	-2.9
3,324,082	+		LRK54_RS15030	0.18	-0.4
3,324,082	+		LRK54_RS15030	0.18	+0.7
3,324,082	+		LRK54_RS15030	0.18	-2.4
3,324,082	+		LRK54_RS15030	0.18	-0.3
3,324,082	+		LRK54_RS15030	0.18	-1.3
3,324,083	-		LRK54_RS15030	0.18	-1.1
3,324,083	-		LRK54_RS15030	0.18	-1.6
3,324,083	-		LRK54_RS15030	0.18	-2.8
3,324,083	-		LRK54_RS15030	0.18	-2.4
3,324,083	-		LRK54_RS15030	0.18	-0.1
3,324,083	-		LRK54_RS15030	0.18	-3.4
3,324,083	-		LRK54_RS15030	0.18	+0.3
3,324,083	-		LRK54_RS15030	0.18	-2.5
3,324,083	-		LRK54_RS15030	0.18	-1.1
3,324,083	-		LRK54_RS15030	0.18	+0.7
3,324,083	-		LRK54_RS15030	0.18	-1.9
3,324,083	-		LRK54_RS15030	0.18	-1.6
3,324,083	-		LRK54_RS15030	0.18	-0.3
3,324,127	+		LRK54_RS15030	0.24	-1.3
3,324,127	+		LRK54_RS15030	0.24	-2.1
3,324,128	-		LRK54_RS15030	0.25	-0.3
3,324,128	-		LRK54_RS15030	0.25	-0.9
3,324,128	-		LRK54_RS15030	0.25	-1.3
3,324,157	+		LRK54_RS15030	0.29	-1.6
3,324,157	+		LRK54_RS15030	0.29	-0.8
3,324,157	+		LRK54_RS15030	0.29	-1.8
3,324,157	+		LRK54_RS15030	0.29	-1.1
3,324,157	+		LRK54_RS15030	0.29	-0.6
3,324,157	+		LRK54_RS15030	0.29	-1.3
3,324,158	-		LRK54_RS15030	0.29	-0.3
3,324,158	-		LRK54_RS15030	0.29	-2.3
3,324,158	-		LRK54_RS15030	0.29	-2.1
3,324,158	-		LRK54_RS15030	0.29	-1.7
3,324,158	-		LRK54_RS15030	0.29	-0.3
3,324,158	-		LRK54_RS15030	0.29	-1.6
3,324,343	+		LRK54_RS15030	0.56	-2.1
3,324,343	+		LRK54_RS15030	0.56	-0.8
3,324,343	+		LRK54_RS15030	0.56	-1.2
3,324,343	+		LRK54_RS15030	0.56	-1.9
3,324,343	+		LRK54_RS15030	0.56	-0.3
3,324,343	+		LRK54_RS15030	0.56	-1.7
3,324,343	+		LRK54_RS15030	0.56	-1.0
3,324,343	+		LRK54_RS15030	0.56	+0.7
3,324,343	+		LRK54_RS15030	0.56	-0.9
3,324,343	+		LRK54_RS15030	0.56	-0.8
3,324,343	+		LRK54_RS15030	0.56	+0.5
3,324,343	+		LRK54_RS15030	0.56	-2.2
3,324,343	+		LRK54_RS15030	0.56	-0.1
3,324,343	+		LRK54_RS15030	0.56	-0.6
3,324,343	+		LRK54_RS15030	0.56	-2.6
3,324,343	+		LRK54_RS15030	0.56	-2.1
3,324,343	+		LRK54_RS15030	0.56	-2.1
3,324,343	+		LRK54_RS15030	0.56	-0.3
3,324,343	+		LRK54_RS15030	0.56	-1.8
3,324,343	+		LRK54_RS15030	0.56	-1.2
3,324,343	+		LRK54_RS15030	0.56	-1.3
3,324,344	-		LRK54_RS15030	0.56	-0.3
3,324,344	-		LRK54_RS15030	0.56	+0.2
3,324,344	-		LRK54_RS15030	0.56	-0.3
3,324,344	-		LRK54_RS15030	0.56	-0.7
3,324,344	-		LRK54_RS15030	0.56	-0.8
3,324,344	-		LRK54_RS15030	0.56	+0.3
3,324,344	-		LRK54_RS15030	0.56	-0.6
3,324,344	-		LRK54_RS15030	0.56	-0.3
3,324,344	-		LRK54_RS15030	0.56	-0.2
3,324,344	-		LRK54_RS15030	0.56	-1.3
3,324,344	-		LRK54_RS15030	0.56	-0.5
3,324,344	-		LRK54_RS15030	0.56	-1.3
3,324,344	-		LRK54_RS15030	0.56	-0.3
3,324,344	-		LRK54_RS15030	0.56	-1.6
3,324,344	-		LRK54_RS15030	0.56	-2.1
3,324,344	-		LRK54_RS15030	0.56	+1.1
3,324,344	-		LRK54_RS15030	0.56	-0.5
3,324,344	-		LRK54_RS15030	0.56	-1.5
3,324,344	-		LRK54_RS15030	0.56	+0.7
3,324,344	-		LRK54_RS15030	0.56	-1.3
3,324,678	+				+0.2
3,324,678	+				-1.4
3,324,678	+				-0.4
3,324,678	+				-0.9
3,324,678	+				-0.9
3,324,678	+				-2.8
3,324,678	+				-0.6
3,324,678	+				-1.0
3,324,678	+				-0.6
3,324,678	+				-0.9
3,324,678	+				-2.4
3,324,678	+				-0.9
3,324,678	+				-0.3
3,324,678	+				-1.1
3,324,678	+				-2.3
3,324,678	+				-0.3
3,324,678	+				-1.6
3,324,678	+				-1.1
3,324,678	+				-1.0
3,324,678	+				-0.4
3,324,678	+				-0.7
3,324,678	+				-2.3
3,324,678	+				-1.9
3,324,678	+				-3.6
3,324,678	+				-0.5
3,324,678	+				-0.8
3,324,678	+				+0.1
3,324,678	+				-1.3
3,324,678	+				-0.9
3,324,678	+				-1.8
3,324,678	+				-0.3
3,324,678	+				-3.4
3,324,678	+				-1.5
3,324,678	+				-2.1
3,324,678	+				-0.8
3,324,678	+				-0.3
3,324,678	+				-1.3
3,324,678	+				-1.3
3,324,679	-				+0.3
3,324,679	-				+0.5
3,324,679	-				-0.0
3,324,679	-				+0.5
3,324,679	-				+0.2
3,324,679	-				-0.0
3,324,679	-				-0.0
3,324,679	-				+0.9
3,324,679	-				+1.3
3,324,679	-				+0.3
3,324,679	-				+0.7
3,324,679	-				-0.9
3,324,679	-				+0.5
3,324,679	-				+0.7
3,324,679	-				-0.8
3,324,679	-				+2.3
3,324,679	-				-0.5
3,324,679	-				-1.9
3,324,679	-				-0.2
3,324,679	-				+0.9
3,324,679	-				+0.3
3,324,679	-				+0.5
3,324,679	-				+0.0
3,324,697	+				+0.4
3,324,697	+				+0.7
3,324,697	+				-1.8
3,324,697	+				+0.1
3,324,697	+				+0.0
3,324,697	+				-0.6
3,324,697	+				+0.7
3,324,697	+				+0.7
3,324,697	+				+0.1
3,324,697	+				+1.0
3,324,697	+				-0.8
3,324,697	+				-0.1
3,324,697	+				-1.3
3,324,697	+				+1.4
3,324,697	+				+0.1
3,324,697	+				-0.0
3,324,697	+				-1.1
3,324,697	+				-1.3
3,324,697	+				-0.3
3,324,697	+				-0.9
3,324,697	+				+0.4
3,324,697	+				-0.5
3,324,697	+				-1.0
3,324,697	+				-0.9
3,324,697	+				+0.2
3,324,697	+				-1.2
3,324,697	+				-0.2
3,324,697	+				+0.3
3,324,697	+				+0.6
3,324,697	+				-1.6
3,324,697	+				-0.1
3,324,698	-				-0.2
3,324,698	-				-0.1
3,324,698	-				+0.5
3,324,698	-				+0.7
3,324,698	-				+0.1
3,324,698	-				+0.1
3,324,698	-				+0.8
3,324,698	-				+0.9
3,324,698	-				+0.2
3,324,698	-				-0.1
3,324,698	-				+1.2
3,324,698	-				-0.2
3,324,698	-				+0.1
3,324,698	-				+1.3
3,324,698	-				+1.2
3,324,698	-				+1.0
3,324,698	-				-0.2
3,324,698	-				-0.1
3,324,698	-				+0.1
3,324,698	-				-0.1
3,324,698	-				+0.2
3,324,698	-				+0.3
3,324,698	-				-0.2
3,324,698	-				-0.1
3,324,698	-				-1.2
3,324,698	-				+0.5
3,324,698	-				-1.4
3,324,698	-				-0.1
3,324,698	-				-0.9
3,324,698	-				-0.2
3,324,725	+				-0.9
3,324,725	+				-0.0
3,324,725	+				-0.2
3,324,725	+				+0.5
3,324,725	+				-0.5
3,324,725	+				-0.8
3,324,725	+				+1.1
3,324,725	+				+0.5
3,324,725	+				-0.3
3,324,725	+				+0.3
3,324,725	+				-0.9
3,324,725	+				-0.2
3,324,725	+				-2.5
3,324,726	-				+0.1
3,324,726	-				-2.5
3,324,726	-				-0.9
3,324,726	-				-0.1
3,324,726	-				+0.3
3,324,726	-				+1.7
3,324,726	-				+0.5
3,324,726	-				-0.2
3,324,726	-				-1.4
3,324,726	-				+1.3
3,324,726	-				-0.7
3,324,726	-				-0.1
3,324,726	-				-0.3
3,324,726	-				+0.4
3,324,726	-				+0.2
3,324,726	-				-0.3
3,324,787	+				-2.6
3,324,787	+				-0.9
3,324,788	-				-0.3
3,324,788	-				-1.6
3,324,836	+				-1.6
3,324,837	-				-2.1
3,324,839	+				+0.7
3,324,839	+				+0.7
3,324,839	+				-2.3
3,324,840	-				+0.1
3,324,840	-				-0.9
3,324,840	-				-1.5
3,324,890	+		LRK54_RS15035	0.10	-3.0
3,324,890	+		LRK54_RS15035	0.10	-1.3
3,324,890	+		LRK54_RS15035	0.10	-2.8
3,324,890	+		LRK54_RS15035	0.10	-1.6
3,324,891	-		LRK54_RS15035	0.10	-1.9
3,324,891	-		LRK54_RS15035	0.10	-0.3
3,324,891	-		LRK54_RS15035	0.10	-0.9
3,324,891	-		LRK54_RS15035	0.10	-1.9
3,324,891	-		LRK54_RS15035	0.10	-0.3
3,324,905	+		LRK54_RS15035	0.11	-0.3
3,324,906	-		LRK54_RS15035	0.11	-1.9
3,324,906	-		LRK54_RS15035	0.11	-1.6
3,324,908	+		LRK54_RS15035	0.11	-0.3
3,324,908	+		LRK54_RS15035	0.11	-0.3
3,324,908	+		LRK54_RS15035	0.11	-1.6
3,324,908	+		LRK54_RS15035	0.11	-0.9
3,324,908	+		LRK54_RS15035	0.11	-0.3
3,324,908	+		LRK54_RS15035	0.11	-1.6
3,324,909	-		LRK54_RS15035	0.11	-1.3
3,324,909	-		LRK54_RS15035	0.11	-0.3
3,324,909	-		LRK54_RS15035	0.11	+0.7
3,324,909	-		LRK54_RS15035	0.11	-1.9
3,324,974	+		LRK54_RS15035	0.15	-0.3
3,324,974	+		LRK54_RS15035	0.15	-2.8
3,324,974	+		LRK54_RS15035	0.15	-0.3
3,324,974	+		LRK54_RS15035	0.15	-1.9
3,324,975	-		LRK54_RS15035	0.15	+0.7
3,324,975	-		LRK54_RS15035	0.15	-1.9
3,324,975	-		LRK54_RS15035	0.15	-0.9
3,324,975	-		LRK54_RS15035	0.15	-2.3
3,324,983	+		LRK54_RS15035	0.16	-1.6
3,324,983	+		LRK54_RS15035	0.16	-0.9
3,324,983	+		LRK54_RS15035	0.16	-1.9
3,324,983	+		LRK54_RS15035	0.16	+0.7
3,324,983	+		LRK54_RS15035	0.16	-1.3
3,324,983	+		LRK54_RS15035	0.16	-1.9
3,324,983	+		LRK54_RS15035	0.16	+0.7
3,324,983	+		LRK54_RS15035	0.16	-1.3
3,324,983	+		LRK54_RS15035	0.16	-1.9
3,324,983	+		LRK54_RS15035	0.16	-1.3
3,324,983	+		LRK54_RS15035	0.16	-1.1
3,324,984	+		LRK54_RS15035	0.16	-1.3
3,324,984	-		LRK54_RS15035	0.16	-0.9
3,324,984	-		LRK54_RS15035	0.16	-0.3
3,324,984	-		LRK54_RS15035	0.16	+0.7
3,324,984	-		LRK54_RS15035	0.16	-1.6
3,324,984	-		LRK54_RS15035	0.16	-1.9
3,324,984	-		LRK54_RS15035	0.16	+0.7
3,324,984	-		LRK54_RS15035	0.16	-0.9
3,324,984	-		LRK54_RS15035	0.16	-1.9
3,324,984	-		LRK54_RS15035	0.16	-0.9
3,324,984	-		LRK54_RS15035	0.16	-0.9
3,324,984	-		LRK54_RS15035	0.16	+0.7
3,324,984	-		LRK54_RS15035	0.16	-1.3
3,324,984	-		LRK54_RS15035	0.16	-3.4
3,324,984	-		LRK54_RS15035	0.16	-0.9
3,325,082	+		LRK54_RS15035	0.22	-1.9
3,325,083	-		LRK54_RS15035	0.22	-1.3
3,325,133	+		LRK54_RS15035	0.25	+0.7
3,325,134	-		LRK54_RS15035	0.25	-0.9
3,325,134	-		LRK54_RS15035	0.25	+0.7
3,325,343	+		LRK54_RS15035	0.38	-1.6
3,325,343	+		LRK54_RS15035	0.38	-0.9
3,325,343	+		LRK54_RS15035	0.38	+0.7
3,325,343	+		LRK54_RS15035	0.38	+0.7
3,325,343	+		LRK54_RS15035	0.38	-2.1
3,325,343	+		LRK54_RS15035	0.38	-1.9
3,325,343	+		LRK54_RS15035	0.38	-1.3
3,325,343	+		LRK54_RS15035	0.38	+0.7
3,325,344	-		LRK54_RS15035	0.38	-0.3
3,325,344	-		LRK54_RS15035	0.38	-1.3
3,325,344	-		LRK54_RS15035	0.38	-1.3
3,325,344	-		LRK54_RS15035	0.38	-1.9
3,325,344	-		LRK54_RS15035	0.38	+0.7
3,325,344	-		LRK54_RS15035	0.38	-1.9
3,325,346	+		LRK54_RS15035	0.38	-1.3
3,325,346	+		LRK54_RS15035	0.38	-0.9
3,325,346	+		LRK54_RS15035	0.38	-1.3
3,325,346	+		LRK54_RS15035	0.38	-0.3
3,325,346	+		LRK54_RS15035	0.38	-0.9
3,325,346	+		LRK54_RS15035	0.38	-2.5
3,325,346	+		LRK54_RS15035	0.38	-1.3
3,325,346	+		LRK54_RS15035	0.38	-2.1
3,325,346	+		LRK54_RS15035	0.38	+0.7
3,325,346	+		LRK54_RS15035	0.38	+0.7
3,325,346	+		LRK54_RS15035	0.38	-1.6
3,325,347	-		LRK54_RS15035	0.38	-1.3
3,325,347	-		LRK54_RS15035	0.38	-2.6
3,325,347	-		LRK54_RS15035	0.38	+0.7
3,325,347	-		LRK54_RS15035	0.38	-1.6
3,325,347	-		LRK54_RS15035	0.38	-0.9
3,325,347	-		LRK54_RS15035	0.38	-1.6
3,325,347	-		LRK54_RS15035	0.38	+0.7
3,325,347	-		LRK54_RS15035	0.38	-0.9
3,325,347	-		LRK54_RS15035	0.38	-1.3
3,325,347	-		LRK54_RS15035	0.38	+0.7
3,325,347	-		LRK54_RS15035	0.38	-0.3
3,325,347	-		LRK54_RS15035	0.38	-0.9
3,325,347	-		LRK54_RS15035	0.38	-0.9
3,325,347	-		LRK54_RS15035	0.38	-0.9
3,325,347	-		LRK54_RS15035	0.38	-2.1
3,325,347	-		LRK54_RS15035	0.38	-2.1
3,325,347	-		LRK54_RS15035	0.38	-1.6
3,325,406	+		LRK54_RS15035	0.42	-2.1
3,325,406	+		LRK54_RS15035	0.42	+0.7
3,325,406	+		LRK54_RS15035	0.42	-0.9
3,325,406	+		LRK54_RS15035	0.42	+0.7
3,325,406	+		LRK54_RS15035	0.42	-1.3
3,325,406	+		LRK54_RS15035	0.42	-1.6
3,325,407	-		LRK54_RS15035	0.42	-0.3
3,325,407	-		LRK54_RS15035	0.42	-1.6
3,325,407	-		LRK54_RS15035	0.42	-1.3