Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS14695

Experiment: R2A with SpecU metal mix 1 X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with SpecU metal mix 1 X
3,254,783	+		LRK54_RS14690	0.14	-0.6
3,254,823	+		LRK54_RS14690	0.19	-0.1
3,254,823	+		LRK54_RS14690	0.19	+0.2
3,254,823	+		LRK54_RS14690	0.19	-0.8
3,254,823	+		LRK54_RS14690	0.19	+0.4
3,254,823	+		LRK54_RS14690	0.19	+0.3
3,254,823	+		LRK54_RS14690	0.19	+0.1
3,254,823	+		LRK54_RS14690	0.19	+0.2
3,254,823	+		LRK54_RS14690	0.19	-1.4
3,254,823	+		LRK54_RS14690	0.19	-0.1
3,254,824	-		LRK54_RS14690	0.19	-0.5
3,254,824	-		LRK54_RS14690	0.19	-0.9
3,254,824	-		LRK54_RS14690	0.19	+0.6
3,254,824	-		LRK54_RS14690	0.19	+0.4
3,254,824	-		LRK54_RS14690	0.19	-0.3
3,254,824	-		LRK54_RS14690	0.19	-1.6
3,254,824	-		LRK54_RS14690	0.19	-0.1
3,254,824	-		LRK54_RS14690	0.19	+1.1
3,254,824	-		LRK54_RS14690	0.19	-0.1
3,254,824	-		LRK54_RS14690	0.19	-0.5
3,254,824	-		LRK54_RS14690	0.19	+0.4
3,254,824	-		LRK54_RS14690	0.19	+0.7
3,254,825	+		LRK54_RS14690	0.19	+0.7
3,254,825	+		LRK54_RS14690	0.19	+0.3
3,254,825	+		LRK54_RS14690	0.19	+0.3
3,254,825	+		LRK54_RS14690	0.19	+1.1
3,254,825	+		LRK54_RS14690	0.19	+0.4
3,254,825	+		LRK54_RS14690	0.19	+1.0
3,254,825	+		LRK54_RS14690	0.19	-0.8
3,254,825	+		LRK54_RS14690	0.19	+0.7
3,254,825	+		LRK54_RS14690	0.19	+0.1
3,254,825	+		LRK54_RS14690	0.19	+0.1
3,254,825	+		LRK54_RS14690	0.19	+0.3
3,254,825	+		LRK54_RS14690	0.19	-2.1
3,254,825	+		LRK54_RS14690	0.19	+0.1
3,254,825	+		LRK54_RS14690	0.19	-0.7
3,254,825	+		LRK54_RS14690	0.19	-0.5
3,254,825	+		LRK54_RS14690	0.19	+0.4
3,254,825	+		LRK54_RS14690	0.19	+0.7
3,254,825	+		LRK54_RS14690	0.19	+0.2
3,254,825	+		LRK54_RS14690	0.19	-0.3
3,254,825	+		LRK54_RS14690	0.19	+0.1
3,254,826	-		LRK54_RS14690	0.19	-0.6
3,254,826	-		LRK54_RS14690	0.19	+0.3
3,254,826	-		LRK54_RS14690	0.19	+1.3
3,254,826	-		LRK54_RS14690	0.19	+0.3
3,254,826	-		LRK54_RS14690	0.19	-0.5
3,254,826	-		LRK54_RS14690	0.19	-0.3
3,254,826	-		LRK54_RS14690	0.19	-0.2
3,254,826	-		LRK54_RS14690	0.19	+0.5
3,254,826	-		LRK54_RS14690	0.19	-0.1
3,254,826	-		LRK54_RS14690	0.19	+1.1
3,254,826	-		LRK54_RS14690	0.19	-0.8
3,254,826	-		LRK54_RS14690	0.19	+0.6
3,254,826	-		LRK54_RS14690	0.19	-0.0
3,254,826	-		LRK54_RS14690	0.19	+0.0
3,254,826	-		LRK54_RS14690	0.19	-0.7
3,254,826	-		LRK54_RS14690	0.19	-0.2
3,254,826	-		LRK54_RS14690	0.19	+0.9
3,254,912	+		LRK54_RS14690	0.29	+0.4
3,254,912	+		LRK54_RS14690	0.29	+0.7
3,254,912	+		LRK54_RS14690	0.29	-0.6
3,254,912	+		LRK54_RS14690	0.29	-0.2
3,254,913	-		LRK54_RS14690	0.29	-0.7
3,254,913	-		LRK54_RS14690	0.29	+1.1
3,254,913	-		LRK54_RS14690	0.29	-0.6
3,254,913	-		LRK54_RS14690	0.29	-1.8
3,254,913	-		LRK54_RS14690	0.29	+0.3
3,254,913	-		LRK54_RS14690	0.29	+0.7
3,254,913	-		LRK54_RS14690	0.29	+0.7
3,255,353	+		LRK54_RS14690	0.79	-0.2
3,255,353	+		LRK54_RS14690	0.79	-0.1
3,255,353	+		LRK54_RS14690	0.79	+0.3
3,255,353	+		LRK54_RS14690	0.79	+0.5
3,255,353	+		LRK54_RS14690	0.79	+1.1
3,255,353	+		LRK54_RS14690	0.79	+0.6
3,255,353	+		LRK54_RS14690	0.79	+0.8
3,255,354	-		LRK54_RS14690	0.79	+1.0
3,255,518	+				+1.3
3,255,565	+				-0.4
3,255,565	+				-0.3
3,255,566	-				+0.6
3,255,566	-				-0.4
3,255,581	-				-0.9
3,255,581	-				-1.3
3,255,619	+				-0.1
3,255,619	+				-0.2
3,255,620	-				-0.5
3,255,620	-				-2.9
3,255,620	-				+0.9
3,255,640	+				+1.3
3,255,640	+				+0.3
3,255,640	+				-0.3
3,255,640	+				-3.0
3,255,640	+				+0.3
3,255,640	+				+0.1
3,255,640	+				-0.3
3,255,640	+				+1.7
3,255,640	+				-1.2
3,255,640	+				+0.0
3,255,641	-				-0.1
3,255,641	-				-0.9
3,255,641	-				-0.6
3,255,641	-				-0.4
3,255,641	-				-1.8
3,255,641	-				-0.6
3,255,641	-				+0.4
3,255,641	-				-0.3
3,255,856	+		LRK54_RS14695	0.20	-3.8
3,255,856	+		LRK54_RS14695	0.20	-2.5
3,255,856	+		LRK54_RS14695	0.20	-0.9
3,255,857	-		LRK54_RS14695	0.20	-1.3
3,255,874	+		LRK54_RS14695	0.23	-2.9
3,255,874	+		LRK54_RS14695	0.23	-1.3
3,255,874	+		LRK54_RS14695	0.23	-2.1
3,255,874	+		LRK54_RS14695	0.23	-1.9
3,255,874	+		LRK54_RS14695	0.23	-0.9
3,255,874	+		LRK54_RS14695	0.23	-0.3
3,255,874	+		LRK54_RS14695	0.23	-0.9
3,255,874	+		LRK54_RS14695	0.23	-2.3
3,255,874	+		LRK54_RS14695	0.23	-0.9
3,255,875	-		LRK54_RS14695	0.23	-3.6
3,255,875	-		LRK54_RS14695	0.23	-1.6
3,255,875	-		LRK54_RS14695	0.23	-1.3
3,255,875	-		LRK54_RS14695	0.23	-0.9
3,255,875	-		LRK54_RS14695	0.23	-2.3
3,255,875	-		LRK54_RS14695	0.23	-1.8
3,255,875	-		LRK54_RS14695	0.23	-1.3
3,255,875	-		LRK54_RS14695	0.23	+0.7
3,255,875	-		LRK54_RS14695	0.23	-1.6
3,255,997	+		LRK54_RS14695	0.43	-1.6
3,255,997	+		LRK54_RS14695	0.43	-3.2
3,255,997	+		LRK54_RS14695	0.43	-0.3
3,255,997	+		LRK54_RS14695	0.43	-2.5
3,255,997	+		LRK54_RS14695	0.43	-1.9
3,255,997	+		LRK54_RS14695	0.43	-2.9
3,255,997	+		LRK54_RS14695	0.43	-2.1
3,255,997	+		LRK54_RS14695	0.43	-1.3
3,255,997	+		LRK54_RS14695	0.43	-2.3
3,255,998	-		LRK54_RS14695	0.43	-3.3
3,255,998	-		LRK54_RS14695	0.43	-4.1
3,255,998	-		LRK54_RS14695	0.43	-0.9
3,255,998	-		LRK54_RS14695	0.43	-3.8
3,255,998	-		LRK54_RS14695	0.43	-2.8
3,255,998	-		LRK54_RS14695	0.43	-0.3
3,255,998	-		LRK54_RS14695	0.43	-0.9
3,255,998	-		LRK54_RS14695	0.43	+0.7
3,256,033	+		LRK54_RS14695	0.49	-0.3
3,256,033	+		LRK54_RS14695	0.49	-1.6
3,256,033	+		LRK54_RS14695	0.49	-1.6
3,256,033	+		LRK54_RS14695	0.49	-0.6
3,256,033	+		LRK54_RS14695	0.49	-2.1
3,256,033	+		LRK54_RS14695	0.49	-0.9
3,256,033	+		LRK54_RS14695	0.49	-3.3
3,256,033	+		LRK54_RS14695	0.49	-4.3
3,256,033	+		LRK54_RS14695	0.49	-1.3
3,256,033	+		LRK54_RS14695	0.49	-1.3
3,256,034	-		LRK54_RS14695	0.49	-1.9
3,256,034	-		LRK54_RS14695	0.49	-0.3
3,256,034	-		LRK54_RS14695	0.49	-2.5
3,256,034	-		LRK54_RS14695	0.49	-3.8
3,256,034	-		LRK54_RS14695	0.49	-2.3
3,256,034	-		LRK54_RS14695	0.49	-2.9
3,256,034	-		LRK54_RS14695	0.49	-2.6
3,256,034	-		LRK54_RS14695	0.49	+0.7
3,256,034	-		LRK54_RS14695	0.49	-0.9
3,256,034	-		LRK54_RS14695	0.49	-1.3
3,256,034	-		LRK54_RS14695	0.49	-2.9
3,256,060	+		LRK54_RS14695	0.53	-1.3
3,256,061	-		LRK54_RS14695	0.54	-3.2
3,256,171	+		LRK54_RS14695	0.72	-1.3
3,256,171	+		LRK54_RS14695	0.72	-1.9
3,256,171	+		LRK54_RS14695	0.72	-2.2
3,256,183	+		LRK54_RS14695	0.74	-3.8
3,256,183	+		LRK54_RS14695	0.74	-2.6
3,256,183	+		LRK54_RS14695	0.74	-2.5
3,256,183	+		LRK54_RS14695	0.74	-2.8
3,256,183	+		LRK54_RS14695	0.74	-1.3
3,256,183	+		LRK54_RS14695	0.74	-2.5
3,256,183	+		LRK54_RS14695	0.74	-2.8
3,256,183	+		LRK54_RS14695	0.74	-1.3
3,256,183	+		LRK54_RS14695	0.74	-0.9
3,256,184	-		LRK54_RS14695	0.74	-2.1
3,256,184	-		LRK54_RS14695	0.74	-0.3
3,256,184	-		LRK54_RS14695	0.74	-0.9
3,256,184	-		LRK54_RS14695	0.74	-2.1
3,256,184	-		LRK54_RS14695	0.74	-2.5
3,256,184	-		LRK54_RS14695	0.74	-1.6
3,256,192	+		LRK54_RS14695	0.75	-1.6
3,256,193	-		LRK54_RS14695	0.75	-2.1
3,256,201	+		LRK54_RS14695	0.77	-2.3
3,256,201	+		LRK54_RS14695	0.77	-3.0
3,256,201	+				-0.3
3,256,201	+		LRK54_RS14695	0.77	-4.1
3,256,201	+		LRK54_RS14695	0.77	-0.3
3,256,201	+		LRK54_RS14695	0.77	+0.7
3,256,201	+		LRK54_RS14695	0.77	-0.5
3,256,201	+		LRK54_RS14695	0.77	-2.6
3,256,201	+		LRK54_RS14695	0.77	-2.3
3,256,201	+		LRK54_RS14695	0.77	-2.5
3,256,201	+		LRK54_RS14695	0.77	-1.6
3,256,201	+		LRK54_RS14695	0.77	-2.2
3,256,201	+		LRK54_RS14695	0.77	-0.5
3,256,201	+		LRK54_RS14695	0.77	-1.9
3,256,202	-		LRK54_RS14695	0.77	-1.6
3,256,202	-		LRK54_RS14695	0.77	-1.3
3,256,202	-		LRK54_RS14695	0.77	-0.9
3,256,202	-		LRK54_RS14695	0.77	-0.9
3,256,202	-		LRK54_RS14695	0.77	-0.9
3,256,202	-		LRK54_RS14695	0.77	-0.3
3,256,202	-		LRK54_RS14695	0.77	-1.4
3,256,202	-		LRK54_RS14695	0.77	-1.6
3,256,202	-		LRK54_RS14695	0.77	-3.2
3,256,202	-		LRK54_RS14695	0.77	-0.3
3,256,202	-		LRK54_RS14695	0.77	-1.9
3,256,202	-		LRK54_RS14695	0.77	+0.7
3,256,202	-		LRK54_RS14695	0.77	-3.6
3,256,202	-		LRK54_RS14695	0.77	-0.9
3,256,202	-		LRK54_RS14695	0.77	-1.3
3,256,202	-		LRK54_RS14695	0.77	-2.0
3,256,261	+		LRK54_RS14695	0.87	-0.9
3,256,261	+		LRK54_RS14695	0.87	-1.9
3,256,261	+		LRK54_RS14695	0.87	-1.6
3,256,261	+		LRK54_RS14695	0.87	-0.9
3,256,262	-		LRK54_RS14695	0.87	-2.5
3,256,262	-		LRK54_RS14695	0.87	-3.1
3,256,262	-		LRK54_RS14695	0.87	+0.7
3,256,262	-		LRK54_RS14695	0.87	-0.6
3,256,262	-		LRK54_RS14695	0.87	-1.6
3,256,266	+		LRK54_RS14695	0.87	-1.6
3,256,266	+		LRK54_RS14695	0.87	-3.0
3,256,266	+		LRK54_RS14695	0.87	-3.2
3,256,266	+		LRK54_RS14695	0.87	-2.3
3,256,267	-		LRK54_RS14695	0.88	-2.3
3,256,267	-		LRK54_RS14695	0.88	-4.0
3,256,267	-		LRK54_RS14695	0.88	+0.7
3,256,267	-		LRK54_RS14695	0.88	-1.3
3,256,267	-		LRK54_RS14695	0.88	-1.3
3,256,267	-		LRK54_RS14695	0.88	-1.3
3,256,392	+				-1.9
3,256,392	+				-0.7
3,256,392	+				+2.3
3,256,392	+				+0.0
3,256,392	+				+0.6
3,256,392	+				-1.4
3,256,392	+				-1.3
3,256,392	+				+1.3
3,256,392	+				+0.7
3,256,392	+				-0.1
3,256,392	+				-1.3
3,256,392	+				-0.7
3,256,392	+				+0.7
3,256,393	-				-0.2
3,256,393	-				-0.6
3,256,393	-				+0.1
3,256,393	-				-2.8
3,256,393	-				-1.4
3,256,393	-				+0.0
3,256,393	-				-0.3
3,256,393	-				+2.7
3,256,393	-				+0.5
3,256,393	-				+1.3
3,256,393	-				-0.8
3,256,393	-				+0.2
3,256,393	-				+0.0
3,256,393	-				-0.0
3,256,393	-				+0.7
3,256,393	-				-0.2
3,256,433	+				+0.4
3,256,433	+				+0.5
3,256,433	+				+0.6
3,256,433	+				+0.4
3,256,433	+				+0.3
3,256,433	+				-0.3
3,256,433	+				+0.9
3,256,433	+				+1.5
3,256,433	+				-1.5
3,256,433	+				-0.5
3,256,433	+				+0.7
3,256,433	+				+0.3
3,256,433	+				+1.3
3,256,433	+				+0.5
3,256,433	+				+0.2
3,256,433	+				+0.3
3,256,433	+				+0.3
3,256,433	+				+0.9
3,256,433	+				-1.8
3,256,433	+				+0.8
3,256,433	+				+0.4
3,256,433	+				+0.3
3,256,433	+				+0.8
3,256,434	-				+0.5
3,256,434	-				+0.6
3,256,434	-				-0.3
3,256,434	-				+0.4
3,256,434	-				+0.3
3,256,434	-				+0.2
3,256,434	-				-0.6
3,256,434	-				-1.6
3,256,434	-				+0.4
3,256,434	-				+0.4
3,256,434	-				-0.3
3,256,434	-				+0.5
3,256,434	-				+0.1
3,256,434	-				-0.3
3,256,434	-				-0.3
3,256,434	-				+0.3
3,256,434	-				+1.5
3,256,434	-				+0.4
3,256,810	+				+0.9
3,256,865	-				+0.7
3,256,865	-				+0.2
3,256,865	-				-1.6
3,256,879	-				-2.1
3,256,960	+		LRK54_RS14705	0.15	+1.8
3,256,960	+		LRK54_RS14705	0.15	+0.0
3,256,960	+		LRK54_RS14705	0.15	-1.6
3,256,960	+		LRK54_RS14705	0.15	-2.1
3,256,960	+		LRK54_RS14705	0.15	+0.1
3,256,960	+		LRK54_RS14705	0.15	-0.8
3,256,960	+		LRK54_RS14705	0.15	+1.3
3,256,960	+		LRK54_RS14705	0.15	+0.1
3,256,960	+		LRK54_RS14705	0.15	+0.4
3,256,960	+		LRK54_RS14705	0.15	+0.0
3,256,960	+		LRK54_RS14705	0.15	+1.8
3,256,960	+		LRK54_RS14705	0.15	-0.8
3,256,960	+		LRK54_RS14705	0.15	+1.1
3,256,960	+		LRK54_RS14705	0.15	-1.1
3,256,961	-		LRK54_RS14705	0.15	-3.0
3,256,961	-		LRK54_RS14705	0.15	-0.8
3,256,961	-		LRK54_RS14705	0.15	-0.1
3,256,961	-		LRK54_RS14705	0.15	+1.1
3,256,961	-		LRK54_RS14705	0.15	-1.6
3,256,961	-		LRK54_RS14705	0.15	-1.6
3,256,961	-		LRK54_RS14705	0.15	-0.7
3,256,961	-		LRK54_RS14705	0.15	-0.5
3,256,963	+		LRK54_RS14705	0.15	-0.3
3,256,963	+		LRK54_RS14705	0.15	+0.0
3,256,963	+		LRK54_RS14705	0.15	-0.7
3,256,963	+		LRK54_RS14705	0.15	-0.3
3,256,963	+		LRK54_RS14705	0.15	-0.6
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