Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS14560

Experiment: R2A with SpecU metal mix 1 X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with SpecU metal mix 1 X
3,230,509	+		LRK54_RS14550	0.88	-0.2
3,230,509	+		LRK54_RS14550	0.88	-0.5
3,230,509	+		LRK54_RS14550	0.88	+1.3
3,230,509	+		LRK54_RS14550	0.88	+0.0
3,230,509	+		LRK54_RS14550	0.88	-0.1
3,230,509	+		LRK54_RS14550	0.88	-0.1
3,230,509	+		LRK54_RS14550	0.88	+0.7
3,230,510	-		LRK54_RS14550	0.88	-0.2
3,230,510	-		LRK54_RS14550	0.88	-0.6
3,230,510	-		LRK54_RS14550	0.88	-0.1
3,230,510	-		LRK54_RS14550	0.88	+0.2
3,230,510	-		LRK54_RS14550	0.88	+0.7
3,230,510	-		LRK54_RS14550	0.88	-1.3
3,230,510	-		LRK54_RS14550	0.88	+0.0
3,230,515	+		LRK54_RS14550	0.89	+0.1
3,230,515	+		LRK54_RS14550	0.89	+0.5
3,230,515	+		LRK54_RS14550	0.89	+0.2
3,230,515	+		LRK54_RS14550	0.89	+0.5
3,230,515	+		LRK54_RS14550	0.89	+1.2
3,230,516	-		LRK54_RS14550	0.89	-1.1
3,230,516	-		LRK54_RS14550	0.89	+0.7
3,230,686	+				-0.5
3,230,686	+				+0.1
3,230,687	-				-0.3
3,230,687	-				-0.8
3,230,687	-				-1.6
3,230,687	-				-0.9
3,230,757	-				+2.7
3,230,816	+				+0.8
3,230,816	+				+0.3
3,230,816	+				+0.6
3,230,816	+				-0.5
3,230,816	+				+0.1
3,230,816	+				-0.3
3,230,816	+				+0.1
3,230,816	+				-0.3
3,230,816	+				+1.4
3,230,816	+				-0.9
3,230,817	-				-0.1
3,230,817	-				+0.9
3,230,817	-				+0.1
3,230,817	-				-0.5
3,230,817	-				+1.5
3,230,817	-				-0.6
3,230,817	-				+0.1
3,230,817	-				-1.3
3,230,855	+		LRK54_RS14555	0.14	-1.3
3,230,855	+		LRK54_RS14555	0.14	-0.3
3,230,855	+		LRK54_RS14555	0.14	+0.2
3,230,855	+		LRK54_RS14555	0.14	+1.0
3,230,855	+		LRK54_RS14555	0.14	+0.7
3,230,855	+		LRK54_RS14555	0.14	+1.7
3,230,855	+		LRK54_RS14555	0.14	+0.5
3,230,855	+		LRK54_RS14555	0.14	+0.1
3,230,855	+		LRK54_RS14555	0.14	-0.9
3,230,856	-		LRK54_RS14555	0.14	+1.1
3,230,856	-		LRK54_RS14555	0.14	+1.7
3,230,856	-		LRK54_RS14555	0.14	-0.7
3,230,856	-		LRK54_RS14555	0.14	-0.9
3,230,856	-		LRK54_RS14555	0.14	+1.1
3,230,856	-		LRK54_RS14555	0.14	-0.5
3,230,856	-		LRK54_RS14555	0.14	+0.3
3,230,945	+		LRK54_RS14555	0.27	+0.1
3,230,945	+		LRK54_RS14555	0.27	-0.1
3,230,945	+		LRK54_RS14555	0.27	-0.0
3,230,945	+		LRK54_RS14555	0.27	-1.4
3,230,945	+		LRK54_RS14555	0.27	-0.9
3,230,945	+		LRK54_RS14555	0.27	+0.1
3,230,945	+		LRK54_RS14555	0.27	+0.3
3,230,945	+		LRK54_RS14555	0.27	-0.1
3,230,945	+		LRK54_RS14555	0.27	-1.5
3,230,945	+		LRK54_RS14555	0.27	-0.1
3,230,945	+		LRK54_RS14555	0.27	+0.2
3,230,945	+		LRK54_RS14555	0.27	-0.2
3,230,946	-		LRK54_RS14555	0.27	-0.3
3,230,946	-		LRK54_RS14555	0.27	-1.1
3,230,946	-		LRK54_RS14555	0.27	+1.3
3,230,946	-		LRK54_RS14555	0.27	+0.2
3,230,946	-		LRK54_RS14555	0.27	+0.7
3,230,946	-		LRK54_RS14555	0.27	+0.7
3,230,946	-		LRK54_RS14555	0.27	+0.7
3,230,946	-		LRK54_RS14555	0.27	+0.7
3,230,946	-		LRK54_RS14555	0.27	-0.2
3,230,946	-		LRK54_RS14555	0.27	-0.0
3,230,946	-		LRK54_RS14555	0.27	+0.4
3,230,946	-		LRK54_RS14555	0.27	+0.0
3,230,946	-		LRK54_RS14555	0.27	+0.1
3,230,954	+		LRK54_RS14555	0.28	+0.3
3,230,954	+		LRK54_RS14555	0.28	+0.2
3,230,954	+		LRK54_RS14555	0.28	+0.9
3,230,954	+		LRK54_RS14555	0.28	+0.7
3,230,954	+		LRK54_RS14555	0.28	+0.3
3,230,954	+		LRK54_RS14555	0.28	-0.6
3,230,954	+		LRK54_RS14555	0.28	+0.7
3,230,954	+		LRK54_RS14555	0.28	+0.1
3,230,954	+		LRK54_RS14555	0.28	+0.6
3,230,954	+		LRK54_RS14555	0.28	+0.9
3,230,954	+		LRK54_RS14555	0.28	-0.3
3,230,954	+		LRK54_RS14555	0.28	+0.3
3,230,954	+		LRK54_RS14555	0.28	+0.7
3,230,954	+		LRK54_RS14555	0.28	-0.0
3,230,954	+		LRK54_RS14555	0.28	-1.9
3,230,954	+		LRK54_RS14555	0.28	+0.2
3,230,954	+		LRK54_RS14555	0.28	+0.5
3,230,954	+		LRK54_RS14555	0.28	-0.6
3,230,954	+		LRK54_RS14555	0.28	+0.7
3,230,955	-		LRK54_RS14555	0.28	+0.5
3,230,955	-		LRK54_RS14555	0.28	-0.6
3,230,955	-		LRK54_RS14555	0.28	-0.6
3,230,955	-		LRK54_RS14555	0.28	-0.1
3,230,955	-		LRK54_RS14555	0.28	+0.2
3,230,955	-		LRK54_RS14555	0.28	+1.2
3,230,955	-		LRK54_RS14555	0.28	-0.8
3,230,955	-		LRK54_RS14555	0.28	-0.3
3,230,955	-		LRK54_RS14555	0.28	+0.1
3,230,955	-		LRK54_RS14555	0.28	+0.6
3,230,955	-		LRK54_RS14555	0.28	-1.1
3,230,955	-		LRK54_RS14555	0.28	-0.5
3,230,955	-		LRK54_RS14555	0.28	-1.6
3,230,955	-		LRK54_RS14555	0.28	-0.4
3,230,955	-		LRK54_RS14555	0.28	+0.2
3,230,955	-		LRK54_RS14555	0.28	-0.7
3,230,955	-		LRK54_RS14555	0.28	-1.1
3,231,125	+		LRK54_RS14555	0.52	+0.8
3,231,125	+		LRK54_RS14555	0.52	-1.1
3,231,125	+		LRK54_RS14555	0.52	+1.4
3,231,126	-		LRK54_RS14555	0.52	+0.7
3,231,126	-		LRK54_RS14555	0.52	-0.8
3,231,126	-		LRK54_RS14555	0.52	-0.7
3,231,126	-		LRK54_RS14555	0.52	+0.1
3,231,126	-		LRK54_RS14555	0.52	+0.5
3,231,134	+		LRK54_RS14555	0.54	+0.3
3,231,134	+		LRK54_RS14555	0.54	-0.2
3,231,134	+		LRK54_RS14555	0.54	-0.3
3,231,134	+		LRK54_RS14555	0.54	+0.8
3,231,134	+		LRK54_RS14555	0.54	-1.3
3,231,134	+		LRK54_RS14555	0.54	+0.5
3,231,134	+		LRK54_RS14555	0.54	+0.4
3,231,135	-		LRK54_RS14555	0.54	-1.6
3,231,135	-		LRK54_RS14555	0.54	+0.3
3,231,135	-		LRK54_RS14555	0.54	+0.3
3,231,135	-		LRK54_RS14555	0.54	-0.2
3,231,135	-		LRK54_RS14555	0.54	+1.7
3,231,135	-		LRK54_RS14555	0.54	-0.1
3,231,135	-		LRK54_RS14555	0.54	+1.7
3,231,158	+		LRK54_RS14555	0.57	-0.0
3,231,158	+		LRK54_RS14555	0.57	+0.2
3,231,158	+		LRK54_RS14555	0.57	+1.5
3,231,159	-		LRK54_RS14555	0.57	-1.1
3,231,159	-		LRK54_RS14555	0.57	+0.2
3,231,293	+		LRK54_RS14555	0.76	-2.1
3,231,293	+		LRK54_RS14555	0.76	-0.2
3,231,293	+		LRK54_RS14555	0.76	-0.3
3,231,293	+		LRK54_RS14555	0.76	-0.3
3,231,293	+		LRK54_RS14555	0.76	-0.1
3,231,293	+		LRK54_RS14555	0.76	+0.1
3,231,293	+		LRK54_RS14555	0.76	-0.1
3,231,293	+		LRK54_RS14555	0.76	+2.0
3,231,293	+		LRK54_RS14555	0.76	-0.3
3,231,293	+		LRK54_RS14555	0.76	+0.2
3,231,293	+		LRK54_RS14555	0.76	-0.5
3,231,293	+		LRK54_RS14555	0.76	+0.1
3,231,293	+		LRK54_RS14555	0.76	-0.3
3,231,294	-		LRK54_RS14555	0.76	+0.7
3,231,294	-		LRK54_RS14555	0.76	+2.3
3,231,294	-		LRK54_RS14555	0.76	+0.1
3,231,294	-		LRK54_RS14555	0.76	-0.2
3,231,294	-		LRK54_RS14555	0.76	-0.2
3,231,294	-		LRK54_RS14555	0.76	-0.3
3,231,294	-		LRK54_RS14555	0.76	+0.1
3,231,294	-		LRK54_RS14555	0.76	-0.2
3,231,294	-		LRK54_RS14555	0.76	+2.1
3,231,294	-		LRK54_RS14555	0.76	-2.7
3,231,294	-		LRK54_RS14555	0.76	-0.4
3,231,294	-		LRK54_RS14555	0.76	-0.2
3,231,341	+		LRK54_RS14555	0.83	+0.2
3,231,342	-		LRK54_RS14555	0.83	-0.4
3,231,404	+				-0.3
3,231,404	+				-1.7
3,231,404	+				+0.6
3,231,404	+				-1.6
3,231,404	+				-0.7
3,231,404	+				-0.5
3,231,404	+				+0.0
3,231,404	+				+0.6
3,231,404	+				-0.9
3,231,404	+				+0.5
3,231,405	-				-0.7
3,231,405	-				+2.0
3,231,405	-				-0.0
3,231,405	-				+0.1
3,231,407	+				-0.1
3,231,407	+				-0.3
3,231,408	-				-0.3
3,231,408	-				-0.0
3,231,473	+				+0.3
3,231,473	+				+0.5
3,231,473	+				+0.7
3,231,473	+				-0.1
3,231,473	+				-0.9
3,231,473	+				-1.3
3,231,473	+				-0.3
3,231,473	+				+0.7
3,231,473	+				+0.7
3,231,473	+				-0.9
3,231,473	+				-0.0
3,231,474	-				+0.4
3,231,474	-				+0.7
3,231,474	-				-0.1
3,231,474	-				+0.2
3,231,474	-				-0.5
3,231,474	-				-0.3
3,231,474	-				+0.4
3,231,474	-				-0.2
3,231,474	-				+0.6
3,231,474	-				+0.5
3,231,474	-				+0.3
3,231,474	-				+1.0
3,231,474	-				+0.5
3,231,474	-				-0.4
3,231,474	-				+0.3
3,231,474	-				-0.3
3,231,668	+		LRK54_RS14560	0.41	-1.4
3,231,669	-		LRK54_RS14560	0.41	-1.8
3,231,703	+		LRK54_RS14560	0.50	+0.1
3,231,703	+		LRK54_RS14560	0.50	-1.9
3,231,703	+		LRK54_RS14560	0.50	+0.4
3,231,703	+		LRK54_RS14560	0.50	+0.2
3,231,703	+		LRK54_RS14560	0.50	-0.1
3,231,703	+		LRK54_RS14560	0.50	-0.8
3,231,704	-		LRK54_RS14560	0.50	-1.3
3,231,704	-		LRK54_RS14560	0.50	+0.2
3,231,704	-		LRK54_RS14560	0.50	-0.0
3,231,704	-		LRK54_RS14560	0.50	-1.8
3,231,704	-		LRK54_RS14560	0.50	-1.0
3,231,704	-		LRK54_RS14560	0.50	-1.6
3,231,704	-		LRK54_RS14560	0.50	-0.7
3,231,766	+		LRK54_RS14560	0.66	-1.9
3,231,766	+		LRK54_RS14560	0.66	-1.8
3,231,766	+		LRK54_RS14560	0.66	-1.6
3,231,766	+		LRK54_RS14560	0.66	-4.0
3,231,766	+		LRK54_RS14560	0.66	-1.4
3,231,767	-		LRK54_RS14560	0.66	-1.7
3,231,767	-		LRK54_RS14560	0.66	-1.3
3,231,767	-		LRK54_RS14560	0.66	-1.8
3,231,767	-		LRK54_RS14560	0.66	-1.7
3,231,767	-		LRK54_RS14560	0.66	-1.3
3,231,767	-		LRK54_RS14560	0.66	-0.1
3,231,767	-		LRK54_RS14560	0.66	+0.1
3,231,767	-		LRK54_RS14560	0.66	-1.3
3,231,796	+		LRK54_RS14560	0.74	+1.1
3,231,796	+		LRK54_RS14560	0.74	-0.6
3,231,796	+		LRK54_RS14560	0.74	-0.7
3,231,796	+		LRK54_RS14560	0.74	-1.6
3,231,796	+		LRK54_RS14560	0.74	-2.0
3,231,796	+		LRK54_RS14560	0.74	-1.6
3,231,796	+		LRK54_RS14560	0.74	-0.8
3,231,796	+		LRK54_RS14560	0.74	+0.7
3,231,796	+		LRK54_RS14560	0.74	+1.0
3,231,796	+		LRK54_RS14560	0.74	-2.0
3,231,796	+		LRK54_RS14560	0.74	+1.7
3,231,796	+		LRK54_RS14560	0.74	-1.6
3,231,796	+		LRK54_RS14560	0.74	-1.7
3,231,797	-		LRK54_RS14560	0.74	-1.6
3,231,797	-		LRK54_RS14560	0.74	-2.7
3,231,797	-		LRK54_RS14560	0.74	-1.2
3,231,797	-		LRK54_RS14560	0.74	-2.0
3,231,797	-		LRK54_RS14560	0.74	-2.0
3,231,797	-		LRK54_RS14560	0.74	+0.5
3,231,797	-		LRK54_RS14560	0.74	-1.8
3,231,797	-		LRK54_RS14560	0.74	-1.9
3,231,797	-		LRK54_RS14560	0.74	-1.9
3,231,797	-		LRK54_RS14560	0.74	-0.6
3,231,797	-		LRK54_RS14560	0.74	-1.0
3,231,797	-		LRK54_RS14560	0.74	-1.2
3,231,797	-		LRK54_RS14560	0.74	-1.1
3,231,797	-		LRK54_RS14560	0.74	-1.5
3,231,858	-		LRK54_RS14560	0.89	-0.5
3,231,884	+				-0.1
3,231,884	+				-2.8
3,231,884	+				-2.1
3,231,884	+				-1.2
3,231,884	+				-0.7
3,231,884	+				-1.0
3,231,884	+				-0.6
3,231,885	-				+1.1
3,231,885	-				-0.3
3,231,885	-				-0.7
3,231,885	-				-0.1
3,231,885	-				-1.8
3,231,885	-				-1.1
3,231,885	-				-1.8
3,231,885	-				-2.2
3,231,885	-				-1.6
3,231,885	-				-0.7
3,231,885	-				-0.7
3,231,885	-				-1.1
3,231,885	-				+1.3
3,231,885	-				-0.5
3,231,885	-				-1.1
3,231,886	+				-1.1
3,231,886	+				-1.8
3,231,886	+				-1.7
3,231,886	+				-1.6
3,231,886	+				-1.2
3,231,886	+				-1.3
3,231,886	+				-1.1
3,231,886	+				-2.9
3,231,886	+				-1.1
3,231,886	+				-0.7
3,231,886	+				-1.1
3,231,886	+				-1.8
3,231,886	+				-1.3
3,231,886	+				-1.7
3,231,886	+				-1.7
3,231,886	+				-0.9
3,231,886	+				-0.8
3,231,886	+				-1.3
3,231,886	+				-1.1
3,231,886	+				-1.6
3,231,886	+				-0.3
3,231,886	+				-0.1
3,231,886	+				-0.3
3,231,886	+				-3.0
3,231,886	+				-1.3
3,231,886	+				-2.0
3,231,886	+				-1.9
3,231,886	+				-1.5
3,231,886	+				-1.8
3,231,886	+				-0.8
3,231,886	+				-1.1
3,231,886	+				-2.5
3,231,886	+				-1.3
3,231,886	+				-1.3
3,231,886	+				-0.6
3,231,886	+				-1.9
3,231,886	+				-1.8
3,231,886	+				-0.9
3,231,886	+				-0.0
3,231,886	+				-1.9
3,231,886	+				-1.3
3,231,887	-				-0.0
3,231,887	-				-1.6
3,231,887	-				-0.9
3,231,887	-				-0.4
3,231,887	-				+0.7
3,231,887	-				-1.9
3,231,887	-				-1.5
3,231,887	-				-0.5
3,231,887	-				-0.5
3,231,887	-				-1.0
3,231,887	-				-0.3
3,231,887	-				-1.9
3,231,887	-				-0.8
3,231,887	-				-2.0
3,231,887	-				-0.3
3,231,887	-				-1.3
3,231,887	-				-1.6
3,231,887	-				+0.7
3,231,887	-				-1.0
3,231,887	-				-1.5
3,231,887	-				+0.1
3,231,887	-				-0.8
3,231,887	-				+0.7
3,231,887	-				-0.1
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