Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS14460

Experiment: R2A with SpecU metal mix 1 X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with SpecU metal mix 1 X
3,212,039	+		LRK54_RS14445	0.83	+2.3
3,212,039	+		LRK54_RS14445	0.83	+1.6
3,212,040	-		LRK54_RS14445	0.83	-0.6
3,212,040	-		LRK54_RS14445	0.83	-0.1
3,212,075	+				-0.3
3,212,075	+				+1.5
3,212,076	-				+0.5
3,212,076	-				+0.6
3,212,076	-				+0.3
3,212,213	+		LRK54_RS14450	0.19	-0.6
3,212,214	-		LRK54_RS14450	0.19	+0.7
3,212,423	+		LRK54_RS14450	0.61	+0.1
3,212,423	+		LRK54_RS14450	0.61	-0.6
3,212,423	+		LRK54_RS14450	0.61	+0.1
3,212,569	+		LRK54_RS14450	0.90	-1.6
3,212,569	+		LRK54_RS14450	0.90	-2.1
3,212,569	+		LRK54_RS14450	0.90	-1.6
3,212,569	+		LRK54_RS14450	0.90	-0.3
3,212,569	+		LRK54_RS14450	0.90	-1.3
3,212,569	+		LRK54_RS14450	0.90	+1.2
3,213,061	-				-1.3
3,213,061	-				-0.9
3,213,061	-				-2.1
3,213,118	+		LRK54_RS14460	0.12	-1.6
3,213,118	+		LRK54_RS14460	0.12	-0.3
3,213,286	+		LRK54_RS14460	0.32	-0.1
3,213,286	+		LRK54_RS14460	0.32	-0.6
3,213,286	+		LRK54_RS14460	0.32	-1.3
3,213,286	+		LRK54_RS14460	0.32	-0.6
3,213,286	+		LRK54_RS14460	0.32	-0.9
3,213,286	+		LRK54_RS14460	0.32	-2.3
3,213,287	-		LRK54_RS14460	0.33	-1.6
3,213,287	-		LRK54_RS14460	0.33	-0.9
3,213,433	+		LRK54_RS14460	0.50	-0.9
3,213,433	+		LRK54_RS14460	0.50	-0.3
3,213,433	+		LRK54_RS14460	0.50	-2.6
3,213,433	+		LRK54_RS14460	0.50	-1.6
3,213,433	+		LRK54_RS14460	0.50	-1.1
3,213,433	+		LRK54_RS14460	0.50	-1.6
3,213,433	+		LRK54_RS14460	0.50	-1.9
3,213,433	+		LRK54_RS14460	0.50	-1.6
3,213,433	+		LRK54_RS14460	0.50	-0.3
3,213,433	+		LRK54_RS14460	0.50	-0.3
3,213,433	+		LRK54_RS14460	0.50	-0.3
3,213,433	+		LRK54_RS14460	0.50	+0.3
3,213,433	+		LRK54_RS14460	0.50	+0.7
3,213,433	+		LRK54_RS14460	0.50	-1.6
3,213,433	+		LRK54_RS14460	0.50	-1.5
3,213,433	+		LRK54_RS14460	0.50	+0.1
3,213,433	+		LRK54_RS14460	0.50	-2.5
3,213,433	+		LRK54_RS14460	0.50	-1.8
3,213,433	+		LRK54_RS14460	0.50	+0.9
3,213,433	+		LRK54_RS14460	0.50	+0.4
3,213,433	+		LRK54_RS14460	0.50	-0.9
3,213,434	-		LRK54_RS14460	0.51	-1.6
3,213,434	-		LRK54_RS14460	0.51	-0.4
3,213,434	-		LRK54_RS14460	0.51	-2.2
3,213,434	-		LRK54_RS14460	0.51	-1.2
3,213,434	-		LRK54_RS14460	0.51	-0.3
3,213,434	-		LRK54_RS14460	0.51	-0.3
3,213,434	-		LRK54_RS14460	0.51	-0.3
3,213,434	-		LRK54_RS14460	0.51	+0.7
3,213,434	-		LRK54_RS14460	0.51	-0.3
3,213,434	-		LRK54_RS14460	0.51	-0.6
3,213,487	+		LRK54_RS14460	0.57	-1.3
3,213,487	+		LRK54_RS14460	0.57	+1.7
3,213,487	+		LRK54_RS14460	0.57	+0.9
3,213,488	-		LRK54_RS14460	0.57	-2.1
3,213,488	-		LRK54_RS14460	0.57	-2.2
3,213,583	+				-0.9
3,213,583	+		LRK54_RS14460	0.69	-1.3
3,213,583	+		LRK54_RS14460	0.69	-2.0
3,213,583	+		LRK54_RS14460	0.69	-0.9
3,213,583	+		LRK54_RS14460	0.69	-1.9
3,213,583	+		LRK54_RS14460	0.69	-0.5
3,213,583	+		LRK54_RS14460	0.69	-1.3
3,213,584	-		LRK54_RS14460	0.69	-1.9
3,213,584	-		LRK54_RS14460	0.69	+0.0
3,213,584	-		LRK54_RS14460	0.69	-2.3
3,213,584	-		LRK54_RS14460	0.69	-0.3
3,213,584	-		LRK54_RS14460	0.69	-1.3
3,213,595	+		LRK54_RS14460	0.70	-2.0
3,213,661	+		LRK54_RS14460	0.78	+0.7
3,213,661	+		LRK54_RS14460	0.78	-3.3
3,213,661	+		LRK54_RS14460	0.78	-1.9
3,213,661	+		LRK54_RS14460	0.78	-0.3
3,213,661	+		LRK54_RS14460	0.78	-0.7
3,213,661	+		LRK54_RS14460	0.78	-1.3
3,213,662	-		LRK54_RS14460	0.79	-1.9
3,213,662	-		LRK54_RS14460	0.79	-0.9
3,213,662	-		LRK54_RS14460	0.79	-0.7
3,213,662	-		LRK54_RS14460	0.79	-0.3
3,213,662	-		LRK54_RS14460	0.79	+1.7
3,213,821	+				+1.3
3,213,821	+				-1.3
3,213,821	+				-0.7
3,213,821	+				-0.3
3,213,822	-				-1.0
3,213,822	-				-2.3
3,213,822	-				-0.1
3,213,822	-				+0.7
3,213,822	-				-1.2
3,213,867	+				-0.8
3,213,867	+				-0.3
3,213,867	+				-1.3
3,213,867	+				-1.7
3,213,867	+				-1.7
3,213,868	-				-1.2
3,213,868	-				-2.8
3,213,868	-				+0.3
3,213,868	-				+0.4
3,213,868	-				+0.3
3,213,868	-				-0.5
3,213,868	-				-0.4
3,213,868	-				+0.3
3,213,868	-				-0.2
3,213,868	-				+0.0
3,213,868	-				+0.5
3,213,868	-				+0.5
3,213,875	+				+0.7
3,213,876	-				-0.3
3,213,876	-				-0.8
3,213,876	-				+0.0
3,213,965	+		LRK54_RS14465	0.12	-0.3
3,213,966	-		LRK54_RS14465	0.12	-0.3
3,214,070	+		LRK54_RS14465	0.25	-0.1
3,214,070	+		LRK54_RS14465	0.25	-0.9
3,214,070	+		LRK54_RS14465	0.25	-1.6
3,214,070	+		LRK54_RS14465	0.25	-0.1
3,214,070	+		LRK54_RS14465	0.25	-1.5
3,214,070	+		LRK54_RS14465	0.25	+0.7
3,214,070	+		LRK54_RS14465	0.25	+0.1
3,214,070	+		LRK54_RS14465	0.25	-0.6
3,214,071	-		LRK54_RS14465	0.26	+0.0
3,214,071	-		LRK54_RS14465	0.26	-1.5
3,214,071	-		LRK54_RS14465	0.26	-0.9
3,214,071	-		LRK54_RS14465	0.26	+0.7
3,214,071	-		LRK54_RS14465	0.26	-0.3
3,214,071	-		LRK54_RS14465	0.26	-1.3
3,214,151	+		LRK54_RS14465	0.36	+1.0
3,214,151	+		LRK54_RS14465	0.36	-0.9
3,214,151	+		LRK54_RS14465	0.36	-1.9
3,214,151	+		LRK54_RS14465	0.36	-0.5
3,214,151	+		LRK54_RS14465	0.36	-0.9
3,214,151	+		LRK54_RS14465	0.36	-0.3
3,214,152	-		LRK54_RS14465	0.36	-0.9
3,214,152	-				-2.1
3,214,152	-		LRK54_RS14465	0.36	-0.6
3,214,152	-		LRK54_RS14465	0.36	-0.4
3,214,152	-		LRK54_RS14465	0.36	-0.6
3,214,152	-		LRK54_RS14465	0.36	+0.7
3,214,311	-		LRK54_RS14465	0.57	-1.1
3,214,311	-		LRK54_RS14465	0.57	-1.2
3,214,311	-		LRK54_RS14465	0.57	-3.2
3,214,636	+				-0.3
3,214,636	+				-1.3
3,214,636	+				-1.6
3,214,636	+				-1.3
3,214,636	+				-0.3
3,214,636	+				-1.3
3,214,636	+				-1.6
3,214,636	+				-0.6
3,214,636	+				-0.3
3,214,636	+				-2.3
3,214,636	+				-2.8
3,214,636	+				-0.3
3,214,636	+				-2.1
3,214,636	+				+0.9
3,214,636	+				+0.8
3,214,636	+				+0.7
3,214,637	-				-1.9
3,214,637	-				+0.1
3,214,637	-				-0.5
3,214,637	-				-1.3
3,214,637	-				+0.3
3,214,637	-				-1.3
3,214,637	-				-1.0
3,214,637	-				-0.2
3,214,637	-				-0.7
3,214,637	-				+0.3
3,214,637	-				-0.1
3,214,751	+		LRK54_RS14470	0.18	-0.2
3,214,762	+		LRK54_RS14470	0.19	-1.3
3,214,762	+		LRK54_RS14470	0.19	-2.5
3,214,762	+		LRK54_RS14470	0.19	-0.9
3,214,762	+		LRK54_RS14470	0.19	-1.8
3,214,762	+		LRK54_RS14470	0.19	-1.9
3,214,762	+		LRK54_RS14470	0.19	-1.8
3,214,762	+		LRK54_RS14470	0.19	-0.3
3,214,762	+		LRK54_RS14470	0.19	-2.6
3,214,762	+		LRK54_RS14470	0.19	-0.3
3,214,762	+		LRK54_RS14470	0.19	-1.9
3,214,763	-		LRK54_RS14470	0.20	-0.3
3,214,763	-		LRK54_RS14470	0.20	-1.9
3,214,763	-		LRK54_RS14470	0.20	+0.5
3,214,763	-		LRK54_RS14470	0.20	-1.2
3,214,763	-		LRK54_RS14470	0.20	-1.1
3,214,763	-		LRK54_RS14470	0.20	+0.7
3,214,763	-		LRK54_RS14470	0.20	+0.1
3,214,763	-		LRK54_RS14470	0.20	+0.4
3,214,763	-		LRK54_RS14470	0.20	+0.7
3,214,763	-		LRK54_RS14470	0.20	-0.3
3,214,763	-		LRK54_RS14470	0.20	+0.7
3,214,763	-		LRK54_RS14470	0.20	-0.5
3,214,763	-		LRK54_RS14470	0.20	+0.7
3,214,768	+		LRK54_RS14470	0.20	-1.9
3,214,768	+		LRK54_RS14470	0.20	+0.1
3,214,768	+		LRK54_RS14470	0.20	+1.7
3,214,768	+		LRK54_RS14470	0.20	-2.6
3,214,768	+		LRK54_RS14470	0.20	-3.4
3,214,768	+		LRK54_RS14470	0.20	-0.3
3,214,768	+		LRK54_RS14470	0.20	-2.5
3,214,768	+		LRK54_RS14470	0.20	-0.9
3,214,768	+		LRK54_RS14470	0.20	-2.3
3,214,769	-		LRK54_RS14470	0.21	-0.2
3,214,769	-		LRK54_RS14470	0.21	-0.4
3,214,769	-		LRK54_RS14470	0.21	+0.7
3,214,769	-		LRK54_RS14470	0.21	+0.7
3,214,769	-		LRK54_RS14470	0.21	-0.2
3,214,769	-		LRK54_RS14470	0.21	-0.9
3,214,769	-		LRK54_RS14470	0.21	+0.0
3,214,769	-		LRK54_RS14470	0.21	-1.0