Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS13910

Experiment: R2A with SpecU metal mix 1 X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with SpecU metal mix 1 X
3,104,368	+		LRK54_RS13905	0.41	+0.1
3,104,368	+		LRK54_RS13905	0.41	+0.7
3,104,369	-		LRK54_RS13905	0.41	-1.3
3,104,369	-		LRK54_RS13905	0.41	-3.0
3,104,369	-		LRK54_RS13905	0.41	+0.4
3,104,612	+		LRK54_RS13905	0.57	+0.8
3,104,612	+		LRK54_RS13905	0.57	-0.4
3,104,612	+		LRK54_RS13905	0.57	-0.5
3,104,612	+		LRK54_RS13905	0.57	+0.7
3,104,612	+		LRK54_RS13905	0.57	+0.9
3,104,612	+		LRK54_RS13905	0.57	-0.0
3,104,612	+		LRK54_RS13905	0.57	-1.3
3,104,612	+		LRK54_RS13905	0.57	-0.2
3,104,612	+		LRK54_RS13905	0.57	+0.3
3,104,612	+		LRK54_RS13905	0.57	+0.3
3,104,612	+		LRK54_RS13905	0.57	+0.1
3,104,612	+		LRK54_RS13905	0.57	-0.5
3,104,612	+		LRK54_RS13905	0.57	-0.3
3,104,612	+		LRK54_RS13905	0.57	+1.3
3,104,612	+		LRK54_RS13905	0.57	+0.3
3,104,612	+		LRK54_RS13905	0.57	+0.5
3,104,612	+		LRK54_RS13905	0.57	-0.4
3,104,612	+		LRK54_RS13905	0.57	+0.8
3,104,612	+		LRK54_RS13905	0.57	+0.0
3,104,612	+		LRK54_RS13905	0.57	-0.5
3,104,613	-		LRK54_RS13905	0.57	-1.3
3,104,613	-		LRK54_RS13905	0.57	-0.0
3,104,613	-		LRK54_RS13905	0.57	-3.0
3,104,613	-		LRK54_RS13905	0.57	-0.3
3,104,613	-		LRK54_RS13905	0.57	-1.3
3,104,613	-		LRK54_RS13905	0.57	-0.3
3,104,613	-		LRK54_RS13905	0.57	+1.1
3,104,613	-		LRK54_RS13905	0.57	+0.5
3,104,613	-		LRK54_RS13905	0.57	-0.4
3,104,613	-		LRK54_RS13905	0.57	+0.4
3,104,613	-		LRK54_RS13905	0.57	-0.1
3,104,613	-		LRK54_RS13905	0.57	-0.5
3,104,613	-		LRK54_RS13905	0.57	-0.2
3,104,613	-		LRK54_RS13905	0.57	+0.2
3,104,706	+		LRK54_RS13905	0.64	+0.7
3,104,706	+		LRK54_RS13905	0.64	-0.1
3,104,707	-		LRK54_RS13905	0.64	+1.7
3,104,839	+		LRK54_RS13905	0.73	+0.2
3,104,839	+		LRK54_RS13905	0.73	-0.5
3,104,839	+		LRK54_RS13905	0.73	+2.5
3,104,839	+		LRK54_RS13905	0.73	+0.5
3,104,839	+		LRK54_RS13905	0.73	+0.9
3,104,840	-		LRK54_RS13905	0.73	+1.1
3,104,840	-		LRK54_RS13905	0.73	+0.2
3,105,249	+				-0.9
3,105,249	+				+0.1
3,105,249	+				-1.8
3,105,326	+				+0.2
3,105,326	+				-0.9
3,105,327	-				-0.7
3,105,327	-				-1.3
3,105,327	-				-0.9
3,105,356	+				-0.5
3,105,356	+				+0.7
3,105,356	+				-1.5
3,105,356	+				-0.7
3,105,476	+		LRK54_RS13910	0.28	-0.5
3,105,476	+		LRK54_RS13910	0.28	+1.1
3,105,707	+		LRK54_RS13910	0.73	-1.4
3,105,794	+		LRK54_RS13910	0.90	-1.3
3,105,794	+		LRK54_RS13910	0.90	-1.9
3,105,794	+		LRK54_RS13910	0.90	-1.9
3,105,794	+		LRK54_RS13910	0.90	-1.0
3,105,794	+		LRK54_RS13910	0.90	-3.0
3,105,794	+		LRK54_RS13910	0.90	-1.1
3,105,794	+		LRK54_RS13910	0.90	+0.3
3,105,794	+		LRK54_RS13910	0.90	-1.3
3,105,794	+		LRK54_RS13910	0.90	-1.9
3,105,794	+		LRK54_RS13910	0.90	-1.0
3,105,794	+		LRK54_RS13910	0.90	+0.3
3,105,795	-		LRK54_RS13910	0.90	+0.0
3,105,795	-		LRK54_RS13910	0.90	-1.3
3,105,795	-		LRK54_RS13910	0.90	-1.3
3,105,795	-		LRK54_RS13910	0.90	-0.7
3,105,795	-		LRK54_RS13910	0.90	-2.7
3,105,795	-		LRK54_RS13910	0.90	-2.5
3,105,795	-		LRK54_RS13910	0.90	-0.3
3,105,795	-		LRK54_RS13910	0.90	-2.2
3,105,795	-		LRK54_RS13910	0.90	-1.8
3,105,862	+				-3.8
3,105,862	+				-1.4
3,105,862	+				-0.8
3,105,862	+				-2.1
3,105,862	+				+1.7
3,105,862	+				-1.9
3,105,862	+				-0.1
3,105,862	+				-1.1
3,105,863	-				-1.2
3,105,863	-				+0.7
3,105,863	-				+0.7
3,105,863	-				-1.9
3,105,963	+				-0.3
3,105,963	+				-0.3
3,105,963	+				-1.9
3,105,964	-				-0.5
3,105,964	-				-1.0
3,105,964	-				-0.6
3,105,964	-				-1.1
3,106,068	+		LRK54_RS13915	0.18	+0.1
3,106,068	+		LRK54_RS13915	0.18	-2.3
3,106,068	+		LRK54_RS13915	0.18	-0.1
3,106,068	+		LRK54_RS13915	0.18	-0.9
3,106,068	+		LRK54_RS13915	0.18	-1.9
3,106,068	+		LRK54_RS13915	0.18	-1.7
3,106,069	-		LRK54_RS13915	0.18	-1.7
3,106,069	-		LRK54_RS13915	0.18	-0.7
3,106,069	-		LRK54_RS13915	0.18	-1.5
3,106,069	-		LRK54_RS13915	0.18	-0.6
3,106,069	-		LRK54_RS13915	0.18	-0.9
3,106,069	-		LRK54_RS13915	0.18	-1.4
3,106,069	-		LRK54_RS13915	0.18	-2.8
3,106,069	-		LRK54_RS13915	0.18	-0.3
3,106,069	-		LRK54_RS13915	0.18	-0.3
3,106,069	-		LRK54_RS13915	0.18	-1.1
3,106,069	-		LRK54_RS13915	0.18	-0.5
3,106,069	-		LRK54_RS13915	0.18	-1.2
3,106,069	-		LRK54_RS13915	0.18	-0.9
3,106,069	-		LRK54_RS13915	0.18	-1.3
3,106,069	-		LRK54_RS13915	0.18	-0.3
3,106,069	-		LRK54_RS13915	0.18	-0.6
3,106,069	-		LRK54_RS13915	0.18	+0.7
3,106,074	+		LRK54_RS13915	0.19	-2.3
3,106,074	+		LRK54_RS13915	0.19	+0.1
3,106,074	+		LRK54_RS13915	0.19	-0.2
3,106,074	+		LRK54_RS13915	0.19	-0.7
3,106,074	+		LRK54_RS13915	0.19	-0.6
3,106,074	+		LRK54_RS13915	0.19	-0.7
3,106,074	+		LRK54_RS13915	0.19	+0.0
3,106,074	+		LRK54_RS13915	0.19	-1.4
3,106,074	+		LRK54_RS13915	0.19	-0.3
3,106,074	+		LRK54_RS13915	0.19	-0.8
3,106,074	+		LRK54_RS13915	0.19	-0.3
3,106,074	+		LRK54_RS13915	0.19	+1.7
3,106,074	+		LRK54_RS13915	0.19	+0.6
3,106,074	+		LRK54_RS13915	0.19	-0.6
3,106,074	+		LRK54_RS13915	0.19	-0.1
3,106,074	+		LRK54_RS13915	0.19	-2.7
3,106,074	+		LRK54_RS13915	0.19	-2.1
3,106,074	+		LRK54_RS13915	0.19	-0.7
3,106,074	+		LRK54_RS13915	0.19	-2.6
3,106,075	-		LRK54_RS13915	0.19	-0.9
3,106,075	-		LRK54_RS13915	0.19	-1.1
3,106,075	-		LRK54_RS13915	0.19	+0.7
3,106,075	-		LRK54_RS13915	0.19	+0.7
3,106,075	-		LRK54_RS13915	0.19	-0.5
3,106,075	-		LRK54_RS13915	0.19	-0.9
3,106,075	-		LRK54_RS13915	0.19	+0.7
3,106,075	-		LRK54_RS13915	0.19	-1.5
3,106,075	-		LRK54_RS13915	0.19	-1.6
3,106,075	-		LRK54_RS13915	0.19	-1.0
3,106,075	-		LRK54_RS13915	0.19	-1.7
3,106,075	-		LRK54_RS13915	0.19	-0.9
3,106,075	-		LRK54_RS13915	0.19	+0.7
3,106,075	-		LRK54_RS13915	0.19	-2.7
3,106,075	-		LRK54_RS13915	0.19	-0.9
3,106,075	-		LRK54_RS13915	0.19	-0.1
3,106,075	-		LRK54_RS13915	0.19	+1.1
3,106,075	-		LRK54_RS13915	0.19	-0.3
3,106,075	-		LRK54_RS13915	0.19	-1.3
3,106,075	-		LRK54_RS13915	0.19	-1.5
3,106,075	-		LRK54_RS13915	0.19	-0.5
3,106,075	-		LRK54_RS13915	0.19	-0.7
3,106,075	-		LRK54_RS13915	0.19	+0.7
3,106,075	-		LRK54_RS13915	0.19	-1.5
3,106,075	-		LRK54_RS13915	0.19	-0.8
3,106,236	+		LRK54_RS13915	0.32	+0.1
3,106,236	+		LRK54_RS13915	0.32	-0.6
3,106,236	+		LRK54_RS13915	0.32	-0.3
3,106,236	+		LRK54_RS13915	0.32	-0.1
3,106,236	+		LRK54_RS13915	0.32	-1.1
3,106,236	+		LRK54_RS13915	0.32	-2.3
3,106,236	+		LRK54_RS13915	0.32	-0.4
3,106,236	+		LRK54_RS13915	0.32	-1.9
3,106,236	+		LRK54_RS13915	0.32	-0.0
3,106,236	+		LRK54_RS13915	0.32	-0.5
3,106,237	-		LRK54_RS13915	0.32	-0.3
3,106,237	-		LRK54_RS13915	0.32	-0.3
3,106,237	-		LRK54_RS13915	0.32	-0.7
3,106,237	-		LRK54_RS13915	0.32	-2.9
3,106,237	-		LRK54_RS13915	0.32	-1.3
3,106,237	-		LRK54_RS13915	0.32	-1.7
3,106,237	-		LRK54_RS13915	0.32	-2.1
3,106,237	-		LRK54_RS13915	0.32	-0.9
3,106,237	-		LRK54_RS13915	0.32	-0.3
3,106,237	-		LRK54_RS13915	0.32	-1.1
3,106,237	-		LRK54_RS13915	0.32	-1.2
3,106,237	-		LRK54_RS13915	0.32	-1.0
3,106,237	-		LRK54_RS13915	0.32	-0.8
3,106,237	-		LRK54_RS13915	0.32	-1.9
3,106,237	-		LRK54_RS13915	0.32	-4.0
3,106,311	+		LRK54_RS13915	0.38	+1.4
3,106,311	+		LRK54_RS13915	0.38	-0.9
3,106,311	+		LRK54_RS13915	0.38	-0.8
3,106,311	+		LRK54_RS13915	0.38	-0.1
3,106,311	+		LRK54_RS13915	0.38	-1.3
3,106,311	+		LRK54_RS13915	0.38	-1.0
3,106,311	+		LRK54_RS13915	0.38	-0.5
3,106,312	-		LRK54_RS13915	0.38	-0.6
3,106,312	-		LRK54_RS13915	0.38	-0.7
3,106,312	-		LRK54_RS13915	0.38	-2.2
3,106,506	+		LRK54_RS13915	0.54	-0.7
3,106,506	+		LRK54_RS13915	0.54	+1.4
3,106,507	-		LRK54_RS13915	0.54	+0.1
3,106,507	-		LRK54_RS13915	0.54	-1.1
3,106,507	-		LRK54_RS13915	0.54	-0.7
3,106,569	+		LRK54_RS13915	0.60	-2.1
3,106,569	+		LRK54_RS13915	0.60	-1.1
3,106,569	+		LRK54_RS13915	0.60	-1.5
3,106,569	+		LRK54_RS13915	0.60	-1.2
3,106,569	+		LRK54_RS13915	0.60	-1.9
3,106,569	+		LRK54_RS13915	0.60	+0.3
3,106,569	+		LRK54_RS13915	0.60	-1.5
3,106,569	+		LRK54_RS13915	0.60	-0.3
3,106,569	+		LRK54_RS13915	0.60	-1.1
3,106,570	-		LRK54_RS13915	0.60	-2.5
3,106,570	-		LRK54_RS13915	0.60	-2.1
3,106,570	-		LRK54_RS13915	0.60	+0.1
3,106,570	-		LRK54_RS13915	0.60	-0.9
3,106,621	-		LRK54_RS13915	0.64	-1.7
3,106,722	+		LRK54_RS13915	0.72	-1.3
3,106,722	+		LRK54_RS13915	0.72	-2.1
3,106,722	+		LRK54_RS13915	0.72	-1.0
3,106,722	+		LRK54_RS13915	0.72	-0.3
3,106,722	+		LRK54_RS13915	0.72	-0.0
3,106,722	+		LRK54_RS13915	0.72	-0.3
3,106,723	-		LRK54_RS13915	0.72	-0.9
3,106,723	-		LRK54_RS13915	0.72	-1.7
3,106,723	-		LRK54_RS13915	0.72	-1.9
3,106,723	-		LRK54_RS13915	0.72	-0.9
3,106,789	+		LRK54_RS13915	0.78	-0.1
3,106,789	+		LRK54_RS13915	0.78	-0.9
3,106,789	+		LRK54_RS13915	0.78	-1.1
3,106,789	+		LRK54_RS13915	0.78	-1.7
3,106,789	+		LRK54_RS13915	0.78	-1.3
3,106,789	+		LRK54_RS13915	0.78	-0.9
3,106,790	-		LRK54_RS13915	0.78	+0.3
3,106,790	-		LRK54_RS13915	0.78	-1.3
3,106,790	-		LRK54_RS13915	0.78	-1.1
3,106,790	-		LRK54_RS13915	0.78	-2.3
3,106,790	-		LRK54_RS13915	0.78	-2.9
3,106,790	-		LRK54_RS13915	0.78	+0.3