Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS13830

Experiment: R2A with SpecU metal mix 1 X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with SpecU metal mix 1 X
3,083,693	+				+0.3
3,083,693	+				-1.6
3,083,693	+				-0.9
3,083,693	+				-2.5
3,083,693	+				+0.7
3,083,693	+				-0.5
3,083,693	+				-1.1
3,083,693	+				+1.7
3,083,693	+				-1.1
3,083,693	+				-0.9
3,083,693	+				-1.3
3,083,693	+				-2.2
3,083,693	+				-1.9
3,083,693	+				+0.1
3,083,693	+				-0.9
3,083,693	+				-2.9
3,083,693	+				+0.4
3,083,693	+				-1.4
3,083,693	+				-0.3
3,083,693	+				-0.5
3,083,694	-				-1.1
3,083,694	-				+0.0
3,083,694	-				-0.0
3,083,694	-				-0.3
3,083,694	-				-0.8
3,083,694	-				+0.1
3,083,694	-				-0.1
3,083,694	-				-0.4
3,083,694	-				+1.7
3,083,694	-				+0.4
3,083,694	-				-0.7
3,083,694	-				-0.5
3,083,694	-				-0.5
3,083,694	-				-2.1
3,083,698	+				+0.9
3,083,699	-				+0.9
3,083,717	+				-0.6
3,083,717	+				+1.0
3,083,717	+				+0.4
3,083,717	+				-0.2
3,083,717	+				+1.3
3,083,717	+				-0.3
3,083,717	+				-0.1
3,083,717	+				+0.2
3,083,717	+				+1.2
3,083,718	-				+0.1
3,083,718	-				+0.7
3,083,718	-				-0.3
3,083,718	-				+0.2
3,083,718	-				-1.1
3,083,718	-				+0.5
3,083,718	-				+0.0
3,083,718	-				+0.7
3,083,718	-				-0.6
3,083,718	-				-0.3
3,083,718	-				-0.1
3,083,718	-				-2.5
3,083,718	-				-0.8
3,083,718	-				-0.7
3,083,736	+				-0.4
3,083,736	+				-0.5
3,083,736	+				-0.1
3,083,736	+				-1.6
3,083,736	+				-2.3
3,083,736	+				-1.0
3,083,736	+				+0.0
3,083,736	+				-0.2
3,083,736	+				+0.7
3,083,736	+				-1.3
3,083,736	+				+0.3
3,083,736	+				-2.1
3,083,736	+				-0.3
3,083,736	+				-0.6
3,083,736	+				+0.7
3,083,736	+				-0.4
3,083,736	+				-0.8
3,083,736	+				-0.1
3,083,736	+				-0.1
3,083,736	+				-0.1
3,083,736	+				-0.3
3,083,736	+				-0.3
3,083,736	+				+0.1
3,083,736	+				+0.1
3,083,736	+				-0.1
3,083,736	+				-0.6
3,083,737	-				-2.9
3,083,737	-				+0.7
3,083,737	-				+0.7
3,083,737	-				-1.6
3,083,737	-				-0.3
3,083,737	-				-0.5
3,083,737	-				-0.4
3,083,737	-				+0.1
3,083,737	-				+2.0
3,083,737	-				-0.3
3,083,737	-				-1.8
3,083,737	-				+0.7
3,083,737	-				-0.9
3,083,737	-				-0.2
3,083,737	-				-0.9
3,083,737	-				+0.7
3,083,737	-				-2.3
3,083,737	-				+0.9
3,083,737	-				-1.3
3,083,737	-				+0.5
3,083,737	-				-0.5
3,083,737	-				-1.1
3,083,737	-				+1.7
3,083,737	-				-1.4
3,083,737	-				-0.5
3,083,737	-				-0.9
3,083,737	-				-0.9
3,084,147	+		LRK54_RS13830	0.12	-2.7
3,084,243	+		LRK54_RS13830	0.24	-1.5
3,084,243	+		LRK54_RS13830	0.24	+0.7
3,084,243	+		LRK54_RS13830	0.24	-1.3
3,084,243	+		LRK54_RS13830	0.24	-1.3
3,084,243	+		LRK54_RS13830	0.24	-1.1
3,084,243	+		LRK54_RS13830	0.24	-1.9
3,084,243	+		LRK54_RS13830	0.24	-2.1
3,084,243	+		LRK54_RS13830	0.24	-2.5
3,084,243	+		LRK54_RS13830	0.24	-1.6
3,084,243	+		LRK54_RS13830	0.24	-1.9
3,084,243	+		LRK54_RS13830	0.24	-2.1
3,084,243	+		LRK54_RS13830	0.24	-0.3
3,084,243	+		LRK54_RS13830	0.24	-2.8
3,084,244	-		LRK54_RS13830	0.24	-1.9
3,084,244	-		LRK54_RS13830	0.24	-3.2
3,084,244	-		LRK54_RS13830	0.24	-1.6
3,084,244	-		LRK54_RS13830	0.24	-0.9
3,084,244	-		LRK54_RS13830	0.24	-0.3
3,084,244	-		LRK54_RS13830	0.24	-2.1
3,084,244	-		LRK54_RS13830	0.24	-2.8
3,084,244	-		LRK54_RS13830	0.24	-3.0
3,084,244	-		LRK54_RS13830	0.24	-1.9
3,084,244	-		LRK54_RS13830	0.24	+0.7
3,084,244	-		LRK54_RS13830	0.24	-1.9
3,084,244	-		LRK54_RS13830	0.24	-1.3
3,084,244	-		LRK54_RS13830	0.24	-3.6
3,084,244	-		LRK54_RS13830	0.24	-0.9
3,084,244	-		LRK54_RS13830	0.24	-0.9
3,084,321	+		LRK54_RS13830	0.34	+0.7
3,084,321	+		LRK54_RS13830	0.34	-1.9
3,084,321	+		LRK54_RS13830	0.34	+0.7
3,084,321	+		LRK54_RS13830	0.34	-2.1
3,084,322	-		LRK54_RS13830	0.34	-1.3
3,084,322	-		LRK54_RS13830	0.34	-1.9
3,084,322	-		LRK54_RS13830	0.34	-1.9
3,084,322	-		LRK54_RS13830	0.34	-1.6
3,084,322	-		LRK54_RS13830	0.34	-0.3
3,084,322	-		LRK54_RS13830	0.34	-2.6
3,084,580	-		LRK54_RS13830	0.68	-1.9
3,084,705	+		LRK54_RS13830	0.84	-1.6
3,084,705	+		LRK54_RS13830	0.84	-1.8
3,084,705	+		LRK54_RS13830	0.84	-1.5
3,084,705	+		LRK54_RS13830	0.84	-3.3
3,084,705	+		LRK54_RS13830	0.84	-2.9
3,084,705	+		LRK54_RS13830	0.84	-1.3
3,084,706	-		LRK54_RS13830	0.84	-4.0
3,084,706	-		LRK54_RS13830	0.84	-4.3
3,084,719	+		LRK54_RS13830	0.86	-1.6
3,084,719	+		LRK54_RS13830	0.86	-2.1
3,084,719	+		LRK54_RS13830	0.86	-2.3
3,084,720	-		LRK54_RS13830	0.86	-1.3
3,084,720	-		LRK54_RS13830	0.86	-1.9
3,084,720	-		LRK54_RS13830	0.86	-0.9
3,084,720	-		LRK54_RS13830	0.86	-0.3
3,084,720	-		LRK54_RS13830	0.86	-2.3
3,084,720	-		LRK54_RS13830	0.86	+0.7
3,084,720	-		LRK54_RS13830	0.86	-0.6
3,084,720	-		LRK54_RS13830	0.86	-1.6
3,084,765	+				-1.3
3,084,765	+				-1.7
3,084,765	+				-2.3
3,084,765	+				-1.9
3,084,765	+				-1.3
3,084,765	+				-2.5
3,084,765	+				-4.0
3,084,765	+				+0.7
3,084,765	+				-1.1
3,084,765	+				-5.4
3,084,765	+				-1.3
3,084,765	+				+0.7
3,084,765	+				+0.7
3,084,765	+				+0.1
3,084,765	+				+0.7
3,084,766	-				-0.3
3,084,766	-				-1.2
3,084,766	-				-0.3
3,084,766	-				-1.9
3,084,766	-				-1.9
3,084,766	-				-1.3
3,084,766	-				-1.9
3,084,766	-				-1.6
3,084,766	-				-2.5
3,084,766	-				-2.5
3,084,805	+				-1.6
3,084,806	-				-3.4
3,084,806	-				+0.7
3,084,806	-				-0.9
3,084,806	-				-1.2
3,084,806	-				-1.6
3,085,067	+		LRK54_RS13835	0.29	+2.3
3,085,067	+		LRK54_RS13835	0.29	+0.1
3,085,067	+		LRK54_RS13835	0.29	+0.4
3,085,067	+		LRK54_RS13835	0.29	+0.0
3,085,067	+		LRK54_RS13835	0.29	+0.1
3,085,067	+		LRK54_RS13835	0.29	+0.1
3,085,068	-		LRK54_RS13835	0.29	+0.3
3,085,068	-		LRK54_RS13835	0.29	-0.6
3,085,068	-		LRK54_RS13835	0.29	-0.3
3,085,068	-		LRK54_RS13835	0.29	+0.3
3,085,068	-		LRK54_RS13835	0.29	+0.7
3,085,068	-		LRK54_RS13835	0.29	-0.1
3,085,068	-		LRK54_RS13835	0.29	-0.9
3,085,068	-		LRK54_RS13835	0.29	+1.7
3,085,068	-		LRK54_RS13835	0.29	-0.5
3,085,279	+		LRK54_RS13835	0.64	-0.5
3,085,295	-		LRK54_RS13835	0.67	-0.9
3,085,295	-		LRK54_RS13835	0.67	+0.5
3,085,364	+		LRK54_RS13835	0.79	-0.3
3,085,364	+		LRK54_RS13835	0.79	-0.1
3,085,364	+		LRK54_RS13835	0.79	-0.6
3,085,364	+		LRK54_RS13835	0.79	-2.1
3,085,364	+		LRK54_RS13835	0.79	-1.1
3,085,364	+		LRK54_RS13835	0.79	+1.3
3,085,364	+		LRK54_RS13835	0.79	-0.7
3,085,364	+		LRK54_RS13835	0.79	+2.7
3,085,364	+		LRK54_RS13835	0.79	+0.9
3,085,364	+		LRK54_RS13835	0.79	-0.3
3,085,364	+		LRK54_RS13835	0.79	-1.2
3,085,364	+		LRK54_RS13835	0.79	-1.2
3,085,364	+		LRK54_RS13835	0.79	+1.7
3,085,364	+		LRK54_RS13835	0.79	-0.7
3,085,364	+		LRK54_RS13835	0.79	-0.2
3,085,364	+		LRK54_RS13835	0.79	-0.5
3,085,364	+		LRK54_RS13835	0.79	+0.0
3,085,364	+		LRK54_RS13835	0.79	-0.8
3,085,364	+		LRK54_RS13835	0.79	-0.5
3,085,364	+		LRK54_RS13835	0.79	-0.6
3,085,364	+		LRK54_RS13835	0.79	+0.1
3,085,364	+		LRK54_RS13835	0.79	-3.1
3,085,364	+		LRK54_RS13835	0.79	-0.1
3,085,364	+		LRK54_RS13835	0.79	+0.1
3,085,364	+		LRK54_RS13835	0.79	+0.3
3,085,364	+		LRK54_RS13835	0.79	+0.0
3,085,364	+		LRK54_RS13835	0.79	-1.6
3,085,364	+		LRK54_RS13835	0.79	-0.1
3,085,364	+		LRK54_RS13835	0.79	-0.1
3,085,364	+		LRK54_RS13835	0.79	+1.3
3,085,364	+		LRK54_RS13835	0.79	+0.6
3,085,364	+		LRK54_RS13835	0.79	+1.7
3,085,364	+		LRK54_RS13835	0.79	+1.5
3,085,364	+		LRK54_RS13835	0.79	-0.0
3,085,364	+		LRK54_RS13835	0.79	-0.1
3,085,364	+		LRK54_RS13835	0.79	-1.0
3,085,364	+		LRK54_RS13835	0.79	-2.5
3,085,364	+		LRK54_RS13835	0.79	+0.5
3,085,364	+		LRK54_RS13835	0.79	-3.2
3,085,364	+		LRK54_RS13835	0.79	-0.0
3,085,365	-		LRK54_RS13835	0.79	-0.0
3,085,365	-		LRK54_RS13835	0.79	-0.2
3,085,365	-		LRK54_RS13835	0.79	+0.1
3,085,365	-		LRK54_RS13835	0.79	-0.3
3,085,365	-		LRK54_RS13835	0.79	+0.0
3,085,365	-		LRK54_RS13835	0.79	-0.3
3,085,365	-		LRK54_RS13835	0.79	+0.3
3,085,365	-		LRK54_RS13835	0.79	+0.1
3,085,365	-		LRK54_RS13835	0.79	-0.1
3,085,365	-		LRK54_RS13835	0.79	-0.3
3,085,365	-		LRK54_RS13835	0.79	+0.1
3,085,365	-		LRK54_RS13835	0.79	-0.3
3,085,365	-		LRK54_RS13835	0.79	-0.9
3,085,365	-		LRK54_RS13835	0.79	-1.3
3,085,365	-		LRK54_RS13835	0.79	-0.5
3,085,365	-		LRK54_RS13835	0.79	-1.9
3,085,365	-		LRK54_RS13835	0.79	+1.2
3,085,365	-		LRK54_RS13835	0.79	-0.1
3,085,365	-		LRK54_RS13835	0.79	+0.5
3,085,365	-		LRK54_RS13835	0.79	+0.3
3,085,365	-		LRK54_RS13835	0.79	-0.3
3,085,365	-		LRK54_RS13835	0.79	-0.6
3,085,365	-		LRK54_RS13835	0.79	+0.5
3,085,365	-		LRK54_RS13835	0.79	-0.3
3,085,365	-		LRK54_RS13835	0.79	+0.2
3,085,365	-		LRK54_RS13835	0.79	+0.0
3,085,365	-		LRK54_RS13835	0.79	-2.1
3,085,365	-		LRK54_RS13835	0.79	-0.4
3,085,365	-		LRK54_RS13835	0.79	+0.8
3,085,365	-		LRK54_RS13835	0.79	+0.7
3,085,365	-		LRK54_RS13835	0.79	+0.7
3,085,365	-		LRK54_RS13835	0.79	-1.4
3,085,365	-		LRK54_RS13835	0.79	-1.4
3,085,365	-		LRK54_RS13835	0.79	+0.3
3,085,365	-		LRK54_RS13835	0.79	-2.1
3,085,365	-		LRK54_RS13835	0.79	+0.5
3,085,365	-		LRK54_RS13835	0.79	+1.1
3,085,365	-		LRK54_RS13835	0.79	+0.1
3,085,365	-		LRK54_RS13835	0.79	+0.4
3,085,365	-		LRK54_RS13835	0.79	-0.3
3,085,365	-		LRK54_RS13835	0.79	+1.6
3,085,365	-		LRK54_RS13835	0.79	+0.1
3,085,365	-		LRK54_RS13835	0.79	-2.3
3,085,365	-		LRK54_RS13835	0.79	+1.0
3,085,365	-		LRK54_RS13835	0.79	-0.5
3,085,551	+				+1.2
3,085,551	+				+1.0
3,085,551	+				-2.6
3,085,551	+				-0.2
3,085,551	+				-0.1
3,085,551	+				+0.9
3,085,552	-				-0.3
3,085,552	-				-1.3
3,085,552	-				+1.3
3,085,552	-				-0.2
3,085,552	-				+0.7
3,085,552	-				-0.9
3,085,552	-				-0.6
3,085,616	+				+0.9
3,085,616	+				+0.7
3,085,616	+				+1.7
3,085,616	+				+0.3
3,085,616	+				-0.1
3,085,616	+				-0.1
3,085,616	+				-0.3
3,085,616	+				-1.5
3,085,616	+				+0.0
3,085,616	+				+0.5
3,085,616	+				-0.3
3,085,616	+				+0.7
3,085,616	+				+0.1
3,085,616	+				+0.2
3,085,616	+				-1.9
3,085,616	+				+1.2
3,085,616	+				-1.2
3,085,616	+				-0.6
3,085,616	+				-0.1
3,085,617	-				-0.2
3,085,617	-				+2.7
3,085,617	-				+0.1
3,085,617	-				-0.4
3,085,617	-				-0.2
3,085,617	-				+0.1
3,085,617	-				-0.4
3,085,617	-				-0.9
3,085,617	-				+0.5
3,085,617	-				-0.4
3,085,617	-				+1.3
3,085,617	-				-0.3
3,085,617	-				+0.7
3,085,617	-				-0.1
3,085,617	-				-1.9
3,085,617	-				-1.3
3,085,617	-				+0.3
3,085,617	-				+0.7
3,085,617	-				+2.7
3,085,617	-				+0.5
3,085,617	-				-0.9
3,085,617	-				+0.5
3,085,617	-				+0.7
3,085,617	-				-0.9
3,085,617	-				-0.9
3,085,617	-				+0.7
3,085,617	-				-1.1
3,085,617	-				-2.0
3,085,617	-				-1.3
3,085,617	-				+0.1
3,085,617	-				-0.3
3,085,617	-				+0.2
3,085,617	-				-1.3