Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS12725

Experiment: R2A with SpecU metal mix 1 X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with SpecU metal mix 1 X
2,848,522	+				+0.4
2,848,522	+				+0.9
2,848,522	+				+3.1
2,848,523	-				-1.6
2,848,523	-				-0.4
2,848,523	-				+0.9
2,848,523	-				+1.4
2,848,523	-				+0.2
2,848,523	-				+0.2
2,848,603	+				+0.0
2,848,604	-				-0.2
2,848,613	-				+1.3
2,848,613	-				+1.3
2,848,613	-				+0.3
2,848,696	+				-0.1
2,848,696	+				+0.1
2,848,708	+				+0.6
2,848,709	-				-0.8
2,848,709	-				-0.5
2,848,709	-				+0.3
2,848,709	-				+0.7
2,848,709	-				+0.4
2,848,709	-				-0.4
2,848,784	+				-0.8
2,848,784	+				-3.0
2,848,933	+				+0.5
2,848,933	+				-0.8
2,848,933	+				+0.5
2,848,933	+				+1.9
2,848,933	+				+0.7
2,848,933	+				-0.4
2,848,933	+				+3.1
2,848,933	+				+0.7
2,848,933	+				+0.4
2,848,933	+				-0.3
2,848,933	+				+1.2
2,848,933	+				-0.2
2,848,933	+				+0.1
2,848,933	+				-0.0
2,848,933	+				-1.1
2,848,933	+				+0.3
2,848,933	+				-0.2
2,848,933	+				-0.3
2,848,934	-				+1.5
2,848,934	-				-2.7
2,848,934	-				-0.7
2,848,934	-				+0.7
2,848,934	-				-0.7
2,848,934	-				-1.3
2,848,934	-				+0.9
2,848,934	-				+0.3
2,848,934	-				-0.5
2,848,934	-				+0.6
2,848,934	-				-0.8
2,848,934	-				-0.4
2,848,934	-				-0.8
2,848,934	-				+0.3
2,848,934	-				-1.1
2,848,934	-				+0.1
2,848,934	-				-0.8
2,848,934	-				+1.7
2,848,934	-				+0.2
2,848,934	-				-0.3
2,848,934	-				+0.2
2,848,934	-				+0.0
2,848,934	-				+0.7
2,849,128	+		LRK54_RS12720	0.50	+0.3
2,849,128	+		LRK54_RS12720	0.50	-0.2
2,849,128	+		LRK54_RS12720	0.50	-0.7
2,849,128	+		LRK54_RS12720	0.50	-0.6
2,849,128	+		LRK54_RS12720	0.50	+1.1
2,849,128	+		LRK54_RS12720	0.50	-0.1
2,849,128	+		LRK54_RS12720	0.50	-0.8
2,849,128	+		LRK54_RS12720	0.50	-0.8
2,849,128	+		LRK54_RS12720	0.50	+0.5
2,849,128	+		LRK54_RS12720	0.50	-0.6
2,849,128	+		LRK54_RS12720	0.50	-1.0
2,849,128	+		LRK54_RS12720	0.50	+0.6
2,849,128	+		LRK54_RS12720	0.50	-0.3
2,849,129	-		LRK54_RS12720	0.50	+0.7
2,849,129	-		LRK54_RS12720	0.50	-1.3
2,849,129	-		LRK54_RS12720	0.50	+0.7
2,849,129	-		LRK54_RS12720	0.50	+0.7
2,849,129	-		LRK54_RS12720	0.50	-0.4
2,849,129	-		LRK54_RS12720	0.50	+0.2
2,849,165	+		LRK54_RS12720	0.58	-1.8
2,849,166	-		LRK54_RS12720	0.58	+0.7
2,849,166	-		LRK54_RS12720	0.58	-1.6
2,849,166	-		LRK54_RS12720	0.58	+0.5
2,849,483	+				+0.1
2,849,483	+				+0.2
2,849,484	-				+0.1
2,849,484	-				+0.7
2,850,084	+		LRK54_RS12725	0.27	-1.3
2,850,084	+		LRK54_RS12725	0.27	-1.8
2,850,084	+		LRK54_RS12725	0.27	-0.3
2,850,084	+		LRK54_RS12725	0.27	-0.3
2,850,084	+		LRK54_RS12725	0.27	-0.8
2,850,084	+		LRK54_RS12725	0.27	-0.3
2,850,084	+		LRK54_RS12725	0.27	-0.3
2,850,084	+		LRK54_RS12725	0.27	-0.3
2,850,084	+		LRK54_RS12725	0.27	-0.3
2,850,084	+		LRK54_RS12725	0.27	-1.6
2,850,085	-		LRK54_RS12725	0.27	-1.5
2,850,085	-		LRK54_RS12725	0.27	+0.7
2,850,085	-		LRK54_RS12725	0.27	-0.6
2,850,085	-		LRK54_RS12725	0.27	+0.0
2,850,085	-		LRK54_RS12725	0.27	+0.2
2,850,222	+		LRK54_RS12725	0.33	-3.0
2,850,222	+		LRK54_RS12725	0.33	-1.0
2,850,222	+		LRK54_RS12725	0.33	-0.8
2,850,222	+		LRK54_RS12725	0.33	-0.3
2,850,222	+		LRK54_RS12725	0.33	-2.1
2,850,222	+		LRK54_RS12725	0.33	+0.2
2,850,222	+		LRK54_RS12725	0.33	-1.3
2,850,222	+		LRK54_RS12725	0.33	-1.3
2,850,222	+		LRK54_RS12725	0.33	-0.8
2,850,222	+		LRK54_RS12725	0.33	-0.8
2,850,222	+		LRK54_RS12725	0.33	-1.6
2,850,222	+		LRK54_RS12725	0.33	+1.2
2,850,222	+		LRK54_RS12725	0.33	-1.6
2,850,222	+		LRK54_RS12725	0.33	-2.3
2,850,222	+				-0.8
2,850,222	+		LRK54_RS12725	0.33	+0.2
2,850,222	+		LRK54_RS12725	0.33	-2.3
2,850,222	+		LRK54_RS12725	0.33	+0.2
2,850,222	+		LRK54_RS12725	0.33	-1.2
2,850,222	+		LRK54_RS12725	0.33	+0.1
2,850,223	-		LRK54_RS12725	0.33	-0.7
2,850,223	-		LRK54_RS12725	0.33	-0.8
2,850,223	-		LRK54_RS12725	0.33	-1.3
2,850,223	-		LRK54_RS12725	0.33	-2.7
2,850,223	-		LRK54_RS12725	0.33	+0.4
2,850,223	-		LRK54_RS12725	0.33	+0.2
2,850,223	-		LRK54_RS12725	0.33	-3.0
2,850,223	-		LRK54_RS12725	0.33	-2.2
2,850,223	-		LRK54_RS12725	0.33	-0.3
2,850,223	-		LRK54_RS12725	0.33	+0.3
2,850,223	-		LRK54_RS12725	0.33	-0.8
2,850,223	-		LRK54_RS12725	0.33	-0.6
2,850,223	-		LRK54_RS12725	0.33	-0.8
2,850,223	-		LRK54_RS12725	0.33	+1.3
2,850,223	-		LRK54_RS12725	0.33	-0.5
2,850,223	-		LRK54_RS12725	0.33	-0.3
2,850,223	-		LRK54_RS12725	0.33	-1.9
2,850,273	+		LRK54_RS12725	0.35	+0.7
2,850,273	+		LRK54_RS12725	0.35	-1.6
2,850,273	+		LRK54_RS12725	0.35	-0.3
2,850,273	+		LRK54_RS12725	0.35	-2.3
2,850,273	+		LRK54_RS12725	0.35	-2.0
2,850,274	-		LRK54_RS12725	0.35	-1.2
2,850,321	+		LRK54_RS12725	0.38	-0.8
2,850,321	+		LRK54_RS12725	0.38	-2.1
2,850,321	+		LRK54_RS12725	0.38	-1.7
2,850,321	+		LRK54_RS12725	0.38	-3.1
2,850,381	+		LRK54_RS12725	0.41	-0.3
2,850,381	+		LRK54_RS12725	0.41	+0.7
2,850,381	+		LRK54_RS12725	0.41	-1.1
2,850,381	+		LRK54_RS12725	0.41	-2.6
2,850,381	+		LRK54_RS12725	0.41	-0.3
2,850,381	+		LRK54_RS12725	0.41	-0.8
2,850,381	+		LRK54_RS12725	0.41	-1.6
2,850,381	+		LRK54_RS12725	0.41	-3.5
2,850,381	+		LRK54_RS12725	0.41	-1.3
2,850,381	+		LRK54_RS12725	0.41	-3.2
2,850,381	+		LRK54_RS12725	0.41	-2.6
2,850,381	+		LRK54_RS12725	0.41	-0.6
2,850,381	+		LRK54_RS12725	0.41	-1.3
2,850,382	-		LRK54_RS12725	0.41	-0.4
2,850,382	-		LRK54_RS12725	0.41	+0.7
2,850,382	-		LRK54_RS12725	0.41	-3.1
2,850,382	-		LRK54_RS12725	0.41	-3.0
2,850,382	-		LRK54_RS12725	0.41	-1.9
2,850,382	-		LRK54_RS12725	0.41	-1.6
2,850,408	+		LRK54_RS12725	0.42	-0.3
2,850,408	+		LRK54_RS12725	0.42	-1.8
2,850,522	+		LRK54_RS12725	0.47	-1.1
2,850,522	+		LRK54_RS12725	0.47	-0.8
2,850,523	-		LRK54_RS12725	0.47	-1.3
2,850,523	-		LRK54_RS12725	0.47	+0.2
2,850,523	-		LRK54_RS12725	0.47	-2.1
2,850,523	-		LRK54_RS12725	0.47	+2.3
2,850,523	-		LRK54_RS12725	0.47	-0.8
2,850,658	-		LRK54_RS12725	0.53	-0.3
2,850,658	-		LRK54_RS12725	0.53	+0.7
2,850,658	-		LRK54_RS12725	0.53	-2.6
2,850,658	-		LRK54_RS12725	0.53	-1.3
2,850,723	+		LRK54_RS12725	0.57	-2.0
2,850,723	+		LRK54_RS12725	0.57	-1.8
2,850,724	-		LRK54_RS12725	0.57	-0.3
2,850,724	-		LRK54_RS12725	0.57	-0.8
2,850,724	-		LRK54_RS12725	0.57	-1.6
2,850,883	-		LRK54_RS12725	0.64	+0.0
2,851,407	+		LRK54_RS12725	0.89	-1.4
2,851,407	+		LRK54_RS12725	0.89	+0.7
2,851,407	+		LRK54_RS12725	0.89	+1.3
2,851,407	+		LRK54_RS12725	0.89	+0.2
2,851,407	+		LRK54_RS12725	0.89	+0.7
2,851,407	+		LRK54_RS12725	0.89	-1.6
2,851,408	-		LRK54_RS12725	0.89	+0.7
2,851,408	-		LRK54_RS12725	0.89	+0.1
2,851,408	-		LRK54_RS12725	0.89	+0.5
2,851,408	-		LRK54_RS12725	0.89	+0.7
2,851,408	-		LRK54_RS12725	0.89	-2.1
2,851,408	-		LRK54_RS12725	0.89	-0.6
2,851,434	+		LRK54_RS12725	0.90	+0.4
2,851,702	+				-0.5
2,851,702	+				+0.7
2,851,702	+				+0.1
2,851,702	+				+0.4
2,851,702	+				-0.5
2,851,702	+				+1.6
2,851,702	+				+2.7
2,851,702	+				-0.3
2,851,702	+				+0.3
2,851,702	+				+0.6
2,851,702	+				+0.3
2,851,702	+				-1.3
2,851,703	-				-1.0
2,851,703	-				+0.5
2,851,703	-				+0.1
2,851,703	-				+0.3
2,851,703	-				-0.0
2,851,703	-				+0.1
2,851,703	-				-1.8
2,851,703	-				-1.3
2,851,703	-				-0.8
2,851,703	-				-0.1
2,851,703	-				-1.8
2,851,703	-				-0.7
2,851,703	-				-1.1
2,851,703	-				+1.2
2,851,703	-				+0.0
2,852,399	+		LRK54_RS12730	0.39	-2.8
2,852,400	-		LRK54_RS12730	0.39	-3.0
2,852,400	-		LRK54_RS12730	0.39	-2.4
2,852,400	-		LRK54_RS12730	0.39	-2.3
2,852,400	-		LRK54_RS12730	0.39	-0.8
2,852,465	+		LRK54_RS12730	0.43	-0.8
2,852,478	+		LRK54_RS12730	0.44	-0.3
2,852,479	-		LRK54_RS12730	0.44	-2.6
2,852,479	-		LRK54_RS12730	0.44	-1.3
2,852,479	-		LRK54_RS12730	0.44	-4.2