Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS12625

Experiment: R2A with SpecU metal mix 1 X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with SpecU metal mix 1 X
2,816,505	+		LRK54_RS12620	0.61	+0.9
2,816,505	+		LRK54_RS12620	0.61	-2.7
2,816,505	+		LRK54_RS12620	0.61	+1.1
2,816,505	+		LRK54_RS12620	0.61	+0.7
2,816,505	+		LRK54_RS12620	0.61	+0.7
2,816,505	+		LRK54_RS12620	0.61	+0.3
2,816,505	+		LRK54_RS12620	0.61	+0.9
2,816,505	+		LRK54_RS12620	0.61	-1.0
2,816,506	-		LRK54_RS12620	0.61	+1.7
2,816,506	-		LRK54_RS12620	0.61	+0.8
2,816,506	-		LRK54_RS12620	0.61	+0.3
2,816,506	-		LRK54_RS12620	0.61	+0.7
2,816,506	-		LRK54_RS12620	0.61	+0.7
2,816,506	-		LRK54_RS12620	0.61	+2.5
2,816,506	-		LRK54_RS12620	0.61	+2.7
2,816,506	-		LRK54_RS12620	0.61	+0.2
2,816,506	-		LRK54_RS12620	0.61	+2.3
2,816,506	-		LRK54_RS12620	0.61	+1.4
2,816,697	+		LRK54_RS12620	0.73	+0.3
2,816,697	+		LRK54_RS12620	0.73	+1.4
2,816,697	+		LRK54_RS12620	0.73	+0.9
2,816,697	+		LRK54_RS12620	0.73	+0.2
2,816,697	+		LRK54_RS12620	0.73	+0.6
2,816,697	+		LRK54_RS12620	0.73	+0.3
2,816,697	+		LRK54_RS12620	0.73	+2.6
2,816,697	+		LRK54_RS12620	0.73	-0.5
2,816,697	+		LRK54_RS12620	0.73	+2.7
2,816,697	+		LRK54_RS12620	0.73	+0.7
2,816,697	+		LRK54_RS12620	0.73	-0.3
2,816,697	+		LRK54_RS12620	0.73	+1.6
2,816,697	+		LRK54_RS12620	0.73	+2.3
2,816,697	+		LRK54_RS12620	0.73	+0.2
2,816,697	+		LRK54_RS12620	0.73	+0.2
2,816,697	+		LRK54_RS12620	0.73	+1.1
2,816,697	+		LRK54_RS12620	0.73	+1.2
2,816,697	+		LRK54_RS12620	0.73	+0.1
2,816,697	+		LRK54_RS12620	0.73	-0.3
2,816,697	+		LRK54_RS12620	0.73	+0.3
2,816,697	+		LRK54_RS12620	0.73	+0.3
2,816,697	+		LRK54_RS12620	0.73	-0.5
2,816,697	+		LRK54_RS12620	0.73	+0.0
2,816,697	+		LRK54_RS12620	0.73	+0.9
2,816,697	+		LRK54_RS12620	0.73	+0.2
2,816,698	-		LRK54_RS12620	0.73	-1.4
2,816,698	-		LRK54_RS12620	0.73	+0.5
2,816,698	-		LRK54_RS12620	0.73	-1.6
2,816,698	-		LRK54_RS12620	0.73	+0.6
2,816,698	-		LRK54_RS12620	0.73	+0.7
2,816,698	-		LRK54_RS12620	0.73	-0.5
2,816,698	-		LRK54_RS12620	0.73	+0.7
2,816,698	-		LRK54_RS12620	0.73	+1.0
2,816,698	-		LRK54_RS12620	0.73	-0.1
2,816,698	-				-0.8
2,816,698	-		LRK54_RS12620	0.73	+0.3
2,816,698	-		LRK54_RS12620	0.73	+0.7
2,816,698	-		LRK54_RS12620	0.73	-0.1
2,816,698	-		LRK54_RS12620	0.73	+0.0
2,816,698	-		LRK54_RS12620	0.73	+0.6
2,816,698	-		LRK54_RS12620	0.73	+0.8
2,816,698	-		LRK54_RS12620	0.73	+0.4
2,816,698	-		LRK54_RS12620	0.73	-1.2
2,816,698	-		LRK54_RS12620	0.73	+1.1
2,816,700	+		LRK54_RS12620	0.74	-0.3
2,816,700	+		LRK54_RS12620	0.74	-0.3
2,816,700	+		LRK54_RS12620	0.74	+0.5
2,816,700	+		LRK54_RS12620	0.74	+0.1
2,816,700	+		LRK54_RS12620	0.74	+0.7
2,816,700	+		LRK54_RS12620	0.74	+0.9
2,816,700	+		LRK54_RS12620	0.74	+1.0
2,816,700	+		LRK54_RS12620	0.74	+0.3
2,816,700	+		LRK54_RS12620	0.74	+1.1
2,816,700	+		LRK54_RS12620	0.74	+0.7
2,816,700	+		LRK54_RS12620	0.74	+0.5
2,816,700	+		LRK54_RS12620	0.74	-0.5
2,816,700	+		LRK54_RS12620	0.74	-0.6
2,816,700	+		LRK54_RS12620	0.74	+0.6
2,816,701	-		LRK54_RS12620	0.74	+0.9
2,816,701	-		LRK54_RS12620	0.74	+0.5
2,816,701	-		LRK54_RS12620	0.74	+0.5
2,816,701	-		LRK54_RS12620	0.74	+0.5
2,816,701	-		LRK54_RS12620	0.74	-0.3
2,816,701	-		LRK54_RS12620	0.74	+0.5
2,816,701	-		LRK54_RS12620	0.74	+0.4
2,816,701	-		LRK54_RS12620	0.74	+0.7
2,816,701	-		LRK54_RS12620	0.74	+0.2
2,816,701	-		LRK54_RS12620	0.74	-0.6
2,816,701	-		LRK54_RS12620	0.74	-0.3
2,816,701	-		LRK54_RS12620	0.74	+0.9
2,816,701	-		LRK54_RS12620	0.74	+2.3
2,816,701	-		LRK54_RS12620	0.74	+1.3
2,816,701	-		LRK54_RS12620	0.74	+0.1
2,816,701	-		LRK54_RS12620	0.74	+1.2
2,816,880	+		LRK54_RS12620	0.85	+0.7
2,816,880	+		LRK54_RS12620	0.85	+0.5
2,816,880	+		LRK54_RS12620	0.85	+0.5
2,816,881	-		LRK54_RS12620	0.85	+1.6
2,816,881	-		LRK54_RS12620	0.85	+1.2
2,816,881	-		LRK54_RS12620	0.85	-0.6
2,816,881	-		LRK54_RS12620	0.85	-0.1
2,816,881	-		LRK54_RS12620	0.85	+0.3
2,816,881	-		LRK54_RS12620	0.85	-1.6
2,816,881	-		LRK54_RS12620	0.85	+0.2
2,816,907	+		LRK54_RS12620	0.87	+0.5
2,816,907	+		LRK54_RS12620	0.87	+0.1
2,816,908	-		LRK54_RS12620	0.87	+3.3
2,816,976	+				+1.1
2,816,976	+				+1.2
2,816,976	+				+0.9
2,816,976	+				+0.7
2,816,976	+				+0.1
2,816,977	-				-0.0
2,816,977	-				+0.5
2,816,977	-				+2.1
2,816,977	-				+0.3
2,816,977	-				+0.1
2,816,977	-				+0.6
2,816,977	-				-0.1
2,816,977	-				-0.5
2,816,977	-				+0.2
2,816,979	-				+0.7
2,817,092	+				+1.9
2,817,092	+				+1.1
2,817,093	-				-0.2
2,817,093	-				+2.3
2,817,093	-				+1.6
2,817,093	-				+0.3
2,817,093	-				+0.4
2,817,099	+				+1.9
2,817,099	+				-1.3
2,817,099	+				-0.5
2,817,099	+				+0.7
2,817,100	-				+0.2
2,817,100	-				+1.2
2,817,100	-				+0.4
2,817,100	-				+0.9
2,817,100	-				+0.5
2,817,284	+				+0.2
2,817,284	+				+0.6
2,817,284	+				+0.7
2,817,285	-				-0.1
2,817,285	-				-0.3
2,817,285	-				-0.6
2,817,285	-				+0.5
2,817,285	-				+0.7
2,817,285	-				-2.1
2,817,351	+				+0.1
2,817,351	+				-0.3
2,817,362	+				-0.8
2,818,831	+		LRK54_RS12625	0.55	+0.6
2,818,831	+		LRK54_RS12625	0.55	+0.7
2,818,831	+		LRK54_RS12625	0.55	-1.4
2,818,831	+		LRK54_RS12625	0.55	+0.7
2,818,831	+		LRK54_RS12625	0.55	-0.2
2,818,831	+		LRK54_RS12625	0.55	+1.7
2,818,831	+		LRK54_RS12625	0.55	+0.7
2,818,831	+		LRK54_RS12625	0.55	-2.3
2,818,831	+		LRK54_RS12625	0.55	-2.3
2,818,831	+		LRK54_RS12625	0.55	-0.4
2,818,831	+		LRK54_RS12625	0.55	+0.4
2,818,832	-		LRK54_RS12625	0.55	+1.0
2,818,832	-		LRK54_RS12625	0.55	+0.7
2,818,832	-		LRK54_RS12625	0.55	-0.8
2,818,832	-		LRK54_RS12625	0.55	+1.3
2,818,832	-		LRK54_RS12625	0.55	-1.8
2,818,832	-		LRK54_RS12625	0.55	+1.2
2,818,832	-		LRK54_RS12625	0.55	+0.5
2,818,832	-		LRK54_RS12625	0.55	-1.1
2,818,832	-		LRK54_RS12625	0.55	-0.6
2,818,832	-		LRK54_RS12625	0.55	-1.3
2,818,832	-		LRK54_RS12625	0.55	-1.6
2,818,832	-		LRK54_RS12625	0.55	-0.2
2,818,832	-		LRK54_RS12625	0.55	+1.2
2,818,927	+		LRK54_RS12625	0.59	-2.3
2,818,927	+		LRK54_RS12625	0.59	-3.5
2,818,927	+		LRK54_RS12625	0.59	-0.8
2,818,927	+		LRK54_RS12625	0.59	-3.0
2,818,927	+		LRK54_RS12625	0.59	-3.5
2,818,927	+		LRK54_RS12625	0.59	-2.9
2,818,927	+		LRK54_RS12625	0.59	-0.6
2,818,927	+		LRK54_RS12625	0.59	-1.9
2,818,928	-		LRK54_RS12625	0.59	-5.0
2,818,928	-		LRK54_RS12625	0.59	-0.3
2,818,928	-		LRK54_RS12625	0.59	-0.8
2,818,928	-		LRK54_RS12625	0.59	-2.8
2,818,928	-		LRK54_RS12625	0.59	-1.8
2,818,928	-		LRK54_RS12625	0.59	-3.3
2,818,928	-		LRK54_RS12625	0.59	+0.2
2,818,928	-		LRK54_RS12625	0.59	-3.1
2,818,928	-		LRK54_RS12625	0.59	-1.3
2,818,928	-		LRK54_RS12625	0.59	-2.6
2,818,928	-		LRK54_RS12625	0.59	-2.3
2,818,933	+		LRK54_RS12625	0.59	-3.0
2,818,933	+		LRK54_RS12625	0.59	-1.8
2,818,933	+		LRK54_RS12625	0.59	-3.7
2,818,933	+		LRK54_RS12625	0.59	-2.3
2,818,933	+		LRK54_RS12625	0.59	-0.3
2,818,933	+		LRK54_RS12625	0.59	-2.1
2,818,933	+		LRK54_RS12625	0.59	-1.6
2,818,933	+		LRK54_RS12625	0.59	-1.8
2,818,933	+		LRK54_RS12625	0.59	-2.3
2,818,933	+		LRK54_RS12625	0.59	+0.7
2,818,933	+		LRK54_RS12625	0.59	-1.6
2,818,933	+		LRK54_RS12625	0.59	-1.3
2,818,933	+		LRK54_RS12625	0.59	-1.6
2,818,933	+		LRK54_RS12625	0.59	-2.1
2,818,933	+		LRK54_RS12625	0.59	-1.3
2,818,933	+		LRK54_RS12625	0.59	-3.5
2,818,933	+		LRK54_RS12625	0.59	-3.1
2,818,933	+		LRK54_RS12625	0.59	-1.3
2,818,934	-		LRK54_RS12625	0.59	-2.6
2,818,934	-		LRK54_RS12625	0.59	-2.8
2,818,934	-		LRK54_RS12625	0.59	-1.1
2,818,934	-		LRK54_RS12625	0.59	-1.6
2,818,934	-		LRK54_RS12625	0.59	+0.7
2,818,934	-		LRK54_RS12625	0.59	-3.2
2,819,164	+		LRK54_RS12625	0.68	-0.3
2,819,164	+		LRK54_RS12625	0.68	-0.3
2,819,164	+		LRK54_RS12625	0.68	-4.3
2,819,164	+		LRK54_RS12625	0.68	-1.6
2,819,164	+		LRK54_RS12625	0.68	-1.3
2,819,164	+		LRK54_RS12625	0.68	-2.4
2,819,165	-		LRK54_RS12625	0.68	-3.3
2,819,165	-		LRK54_RS12625	0.68	-0.8
2,819,165	-		LRK54_RS12625	0.68	+0.7
2,819,165	-		LRK54_RS12625	0.68	-2.4
2,819,165	-		LRK54_RS12625	0.68	+0.7
2,819,165	-		LRK54_RS12625	0.68	-2.7
2,819,165	-		LRK54_RS12625	0.68	-0.8
2,819,165	-		LRK54_RS12625	0.68	-3.2
2,819,165	-		LRK54_RS12625	0.68	-3.6
2,819,307	+		LRK54_RS12625	0.73	-2.6
2,819,455	+		LRK54_RS12625	0.79	-4.0
2,819,455	+		LRK54_RS12625	0.79	-0.3
2,819,455	+		LRK54_RS12625	0.79	-1.8
2,819,455	+		LRK54_RS12625	0.79	-2.6
2,819,455	+		LRK54_RS12625	0.79	-2.2
2,819,455	+		LRK54_RS12625	0.79	-2.3
2,819,455	+		LRK54_RS12625	0.79	-3.5
2,819,455	+		LRK54_RS12625	0.79	-2.6
2,819,455	+		LRK54_RS12625	0.79	-1.3
2,819,455	+		LRK54_RS12625	0.79	-1.6
2,819,455	+		LRK54_RS12625	0.79	-2.1
2,819,455	+		LRK54_RS12625	0.79	-2.3
2,819,455	+		LRK54_RS12625	0.79	+0.7
2,819,455	+		LRK54_RS12625	0.79	-3.0
2,819,455	+		LRK54_RS12625	0.79	-3.3
2,819,455	+		LRK54_RS12625	0.79	-3.3
2,819,455	+		LRK54_RS12625	0.79	-0.3
2,819,455	+		LRK54_RS12625	0.79	-1.3
2,819,455	+		LRK54_RS12625	0.79	-3.0
2,819,455	+		LRK54_RS12625	0.79	-3.2
2,819,455	+		LRK54_RS12625	0.79	-1.3
2,819,455	+		LRK54_RS12625	0.79	-1.6
2,819,456	-		LRK54_RS12625	0.79	+0.7
2,819,456	-		LRK54_RS12625	0.79	-1.6
2,819,456	-		LRK54_RS12625	0.79	-0.3
2,819,456	-		LRK54_RS12625	0.79	-2.3
2,819,456	-		LRK54_RS12625	0.79	-0.8
2,819,456	-		LRK54_RS12625	0.79	-0.3
2,819,456	-		LRK54_RS12625	0.79	-0.8
2,819,456	-		LRK54_RS12625	0.79	-2.3
2,819,456	-		LRK54_RS12625	0.79	-3.0
2,819,456	-		LRK54_RS12625	0.79	+0.7
2,819,456	-		LRK54_RS12625	0.79	-2.4
2,819,456	-		LRK54_RS12625	0.79	-0.8
2,819,456	-		LRK54_RS12625	0.79	+0.7
2,819,456	-		LRK54_RS12625	0.79	-2.4
2,819,456	-		LRK54_RS12625	0.79	-2.1
2,819,456	-		LRK54_RS12625	0.79	-0.3
2,819,456	-		LRK54_RS12625	0.79	-0.3
2,819,456	-		LRK54_RS12625	0.79	-0.3
2,819,456	-		LRK54_RS12625	0.79	-2.1
2,819,456	-		LRK54_RS12625	0.79	-1.3
2,819,456	-		LRK54_RS12625	0.79	-2.7
2,819,456	-		LRK54_RS12625	0.79	-0.8
2,819,456	-		LRK54_RS12625	0.79	-1.3
2,819,611	+		LRK54_RS12625	0.85	+0.7
2,819,611	+		LRK54_RS12625	0.85	-1.0
2,819,611	+		LRK54_RS12625	0.85	-2.1
2,819,612	-		LRK54_RS12625	0.85	-0.3
2,819,612	-		LRK54_RS12625	0.85	-3.3
2,819,639	-		LRK54_RS12625	0.86	-1.6
2,819,639	-		LRK54_RS12625	0.86	-1.1
2,819,707	+		LRK54_RS12625	0.89	-1.6
2,819,755	+				-3.1
2,819,755	+				-0.3
2,819,755	+				-3.4
2,819,755	+				-3.4
2,819,755	+				-3.3
2,819,755	+				-2.4
2,819,755	+				-0.8
2,819,755	+				-2.7
2,819,755	+				-2.4
2,819,756	-				-2.1
2,819,756	-				-2.5
2,819,756	-				-0.8
2,819,756	-				-3.6
2,819,756	-				-3.0
2,819,756	-				-2.1
2,819,756	-				-1.3
2,819,756	-				-2.1
2,819,756	-				-3.0
2,819,756	-				-3.3
2,819,756	-				-2.6
2,819,756	-				-2.3
2,819,815	+				+0.5
2,819,815	+				-4.1
2,819,815	+				-1.3
2,819,815	+				-3.8
2,819,815	+				-0.8
2,819,815	+				-2.3
2,819,815	+				-0.8
2,819,816	-				-3.3
2,819,923	+				-1.8
2,819,923	+				-0.8
2,819,923	+				-4.2
2,819,924	-				-2.3
2,819,947	+				-2.1
2,819,947	+				-2.1
2,819,947	+				-2.0
2,819,947	+				-2.8
2,819,947	+				-0.3
2,819,947	+				-1.6
2,819,947	+				-3.0
2,819,947	+				-2.4
2,819,947	+				-1.1
2,819,947	+				-0.7
2,819,947	+				-0.7
2,819,947	+				-1.3
2,819,947	+				-2.4
2,819,947	+				-1.4
2,819,948	-				+0.7
2,819,948	-				-3.9
2,819,948	-				-1.8
2,819,948	-				-1.7
2,819,948	-				-1.3
2,819,948	-				+0.7
2,819,948	-				-2.3
2,819,948	-				-2.8
2,819,948	-				-2.3
2,819,948	-				-1.3
2,819,948	-				-2.1
2,819,948	-				-1.3
2,819,948	-				-2.4
2,819,948	-				-1.3
2,819,948	-				-2.1
2,819,948	-				-3.3
2,820,209	+		LRK54_RS12630	0.33	-1.4
2,820,209	+		LRK54_RS12630	0.33	-1.2
2,820,209	+		LRK54_RS12630	0.33	+0.5
2,820,209	+		LRK54_RS12630	0.33	+0.7
2,820,209	+		LRK54_RS12630	0.33	-1.2
2,820,209	+		LRK54_RS12630	0.33	-0.3
2,820,209	+		LRK54_RS12630	0.33	+0.2
2,820,209	+		LRK54_RS12630	0.33	+0.0
2,820,209	+		LRK54_RS12630	0.33	+0.9
2,820,209	+		LRK54_RS12630	0.33	-1.9
2,820,209	+		LRK54_RS12630	0.33	+2.7
2,820,209	+		LRK54_RS12630	0.33	+0.4
2,820,209	+		LRK54_RS12630	0.33	+0.2
2,820,209	+		LRK54_RS12630	0.33	-0.8
2,820,209	+		LRK54_RS12630	0.33	-0.3
2,820,209	+		LRK54_RS12630	0.33	+1.2
2,820,209	+		LRK54_RS12630	0.33	-0.1
2,820,209	+		LRK54_RS12630	0.33	-0.1
2,820,210	-		LRK54_RS12630	0.34	-0.1
2,820,210	-		LRK54_RS12630	0.34	+0.7
2,820,210	-		LRK54_RS12630	0.34	-0.7
2,820,210	-		LRK54_RS12630	0.34	+0.7
2,820,210	-		LRK54_RS12630	0.34	+0.6
2,820,210	-		LRK54_RS12630	0.34	-1.7
2,820,210	-		LRK54_RS12630	0.34	+0.7
2,820,210	-		LRK54_RS12630	0.34	-0.2
2,820,210	-		LRK54_RS12630	0.34	-0.5
2,820,210	-		LRK54_RS12630	0.34	+0.7
2,820,210	-		LRK54_RS12630	0.34	+0.0
2,820,210	-		LRK54_RS12630	0.34	+0.7
2,820,308	+		LRK54_RS12630	0.58	+0.1
2,820,308	+		LRK54_RS12630	0.58	+0.2
2,820,308	+		LRK54_RS12630	0.58	+2.1
2,820,309	-		LRK54_RS12630	0.58	-0.3
2,820,367	+		LRK54_RS12630	0.72	-0.3
2,820,482	+				-0.3