Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS12460

Experiment: R2A with SpecU metal mix 1 X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with SpecU metal mix 1 X
2,779,823	-		LRK54_RS12455	0.46	+1.7
2,779,823	-		LRK54_RS12455	0.46	+1.0
2,779,823	-		LRK54_RS12455	0.46	-1.3
2,779,823	-		LRK54_RS12455	0.46	+1.3
2,779,823	-		LRK54_RS12455	0.46	+0.7
2,779,823	-		LRK54_RS12455	0.46	+1.2
2,779,823	-		LRK54_RS12455	0.46	-0.3
2,779,823	-		LRK54_RS12455	0.46	+1.1
2,779,823	-		LRK54_RS12455	0.46	+0.0
2,779,823	-		LRK54_RS12455	0.46	+0.6
2,779,823	-		LRK54_RS12455	0.46	+0.2
2,779,823	-		LRK54_RS12455	0.46	-0.3
2,779,823	-		LRK54_RS12455	0.46	-0.2
2,779,823	-		LRK54_RS12455	0.46	+1.0
2,779,945	+		LRK54_RS12455	0.53	-0.2
2,779,945	+		LRK54_RS12455	0.53	-0.8
2,779,945	+		LRK54_RS12455	0.53	+0.4
2,779,946	-		LRK54_RS12455	0.53	+0.1
2,779,946	-		LRK54_RS12455	0.53	-0.4
2,779,946	-		LRK54_RS12455	0.53	+0.2
2,779,946	-		LRK54_RS12455	0.53	+0.4
2,779,946	-		LRK54_RS12455	0.53	-0.1
2,779,946	-		LRK54_RS12455	0.53	+2.7
2,779,946	-		LRK54_RS12455	0.53	+0.4
2,780,206	+		LRK54_RS12455	0.67	+0.0
2,780,206	+		LRK54_RS12455	0.67	+0.4
2,780,206	+		LRK54_RS12455	0.67	-0.5
2,780,206	+		LRK54_RS12455	0.67	+1.7
2,780,206	+		LRK54_RS12455	0.67	+1.3
2,780,206	+		LRK54_RS12455	0.67	-0.0
2,780,206	+		LRK54_RS12455	0.67	-0.5
2,780,206	+		LRK54_RS12455	0.67	+0.7
2,780,206	+		LRK54_RS12455	0.67	+0.5
2,780,206	+		LRK54_RS12455	0.67	-0.2
2,780,206	+		LRK54_RS12455	0.67	+1.2
2,780,206	+		LRK54_RS12455	0.67	+0.3
2,780,206	+		LRK54_RS12455	0.67	+2.3
2,780,206	+		LRK54_RS12455	0.67	+1.0
2,780,207	-		LRK54_RS12455	0.67	+0.9
2,780,207	-		LRK54_RS12455	0.67	+0.3
2,780,207	-		LRK54_RS12455	0.67	+0.1
2,780,207	-		LRK54_RS12455	0.67	+0.2
2,780,207	-		LRK54_RS12455	0.67	-0.1
2,780,207	-		LRK54_RS12455	0.67	+1.2
2,780,207	-		LRK54_RS12455	0.67	+0.4
2,780,207	-		LRK54_RS12455	0.67	+0.5
2,780,207	-		LRK54_RS12455	0.67	+0.7
2,780,207	-		LRK54_RS12455	0.67	-0.8
2,780,207	-		LRK54_RS12455	0.67	+0.0
2,780,207	-		LRK54_RS12455	0.67	-0.7
2,780,207	-		LRK54_RS12455	0.67	+0.7
2,780,207	-		LRK54_RS12455	0.67	+0.2
2,780,207	-		LRK54_RS12455	0.67	-0.1
2,780,207	-		LRK54_RS12455	0.67	-0.6
2,780,426	+		LRK54_RS12455	0.80	+0.7
2,780,488	+		LRK54_RS12455	0.83	-0.8
2,780,590	+		LRK54_RS12455	0.89	+1.7
2,780,590	+		LRK54_RS12455	0.89	+0.7
2,780,591	-		LRK54_RS12455	0.89	+0.6
2,780,782	+				-0.6
2,780,782	+				-2.3
2,780,782	+				-1.3
2,780,782	+				-0.1
2,780,782	+				+0.1
2,780,782	+				-0.8
2,780,782	+				-0.6
2,780,782	+				-0.8
2,780,782	+				-0.3
2,780,782	+				+0.6
2,780,782	+				+0.2
2,780,782	+				+0.7
2,780,782	+				-0.8
2,780,782	+				-1.5
2,780,782	+				+0.3
2,780,782	+				+1.2
2,780,782	+				+0.0
2,780,782	+				+1.9
2,780,782	+				+0.1
2,780,782	+				+0.3
2,780,782	+				-0.1
2,780,782	+				-0.7
2,780,782	+				-0.0
2,780,782	+				+1.0
2,780,782	+				+0.3
2,780,782	+				+1.7
2,780,782	+				-0.1
2,780,782	+				+1.6
2,780,782	+				+0.6
2,780,783	-				+0.7
2,780,783	-				-0.8
2,780,783	-				-0.5
2,780,783	-				-0.9
2,780,783	-				+1.2
2,780,783	-				+0.7
2,780,783	-				-0.3
2,780,783	-				+0.3
2,780,783	-				+1.0
2,780,783	-				+0.3
2,780,783	-				-0.6
2,780,783	-				-0.7
2,780,783	-				+0.5
2,780,783	-				+0.3
2,780,783	-				+0.5
2,780,783	-				+0.4
2,780,783	-				+1.0
2,780,783	-				-0.4
2,780,783	-				-1.8
2,780,783	-				+0.4
2,780,783	-				+1.7
2,780,783	-				+0.1
2,780,783	-				+0.5
2,780,783	-				-1.4
2,780,783	-				-0.7
2,780,783	-				+0.9
2,780,783	-				-0.8
2,780,783	-				-0.8
2,780,783	-				+0.3
2,780,783	-				+0.9
2,780,783	-				-0.2
2,780,824	+				-0.8
2,780,824	+				+1.3
2,780,825	-				-1.6
2,780,825	-				-0.6
2,780,830	+				-0.8
2,780,830	+				+0.7
2,780,830	+				-1.3
2,780,830	+				-0.8
2,780,830	+				-1.6
2,780,830	+				+0.7
2,780,830	+				-1.3
2,780,831	-				-0.3
2,780,831	-				-1.8
2,781,139	+		LRK54_RS12460	0.66	-1.6
2,781,139	+		LRK54_RS12460	0.66	-1.3
2,781,139	+		LRK54_RS12460	0.66	-2.1
2,781,139	+		LRK54_RS12460	0.66	-1.3
2,781,139	+		LRK54_RS12460	0.66	+0.7
2,781,140	-		LRK54_RS12460	0.66	-2.1
2,781,140	-		LRK54_RS12460	0.66	-0.8
2,781,140	-		LRK54_RS12460	0.66	-0.8
2,781,140	-		LRK54_RS12460	0.66	+0.7
2,781,140	-		LRK54_RS12460	0.66	+0.7
2,781,140	-		LRK54_RS12460	0.66	-0.8
2,781,140	-		LRK54_RS12460	0.66	-2.3
2,781,156	-		LRK54_RS12460	0.70	+0.7
2,781,223	+		LRK54_RS12460	0.84	-2.1
2,781,223	+		LRK54_RS12460	0.84	+0.7
2,781,223	+		LRK54_RS12460	0.84	-1.8
2,781,335	+				-1.0
2,781,335	+				+0.4
2,781,335	+				+0.7
2,781,336	-				+0.5
2,781,336	-				+0.7
2,781,336	-				+1.7
2,781,635	+		LRK54_RS12465	0.20	+1.1
2,781,635	+		LRK54_RS12465	0.20	+1.2
2,781,635	+		LRK54_RS12465	0.20	+0.7
2,781,635	+		LRK54_RS12465	0.20	-0.2
2,781,635	+		LRK54_RS12465	0.20	+0.7
2,781,635	+		LRK54_RS12465	0.20	+0.0
2,781,635	+		LRK54_RS12465	0.20	-0.2
2,781,635	+		LRK54_RS12465	0.20	+0.6
2,781,635	+		LRK54_RS12465	0.20	+1.7
2,781,635	+		LRK54_RS12465	0.20	+0.9
2,781,635	+		LRK54_RS12465	0.20	-0.1
2,781,635	+		LRK54_RS12465	0.20	+0.6
2,781,635	+		LRK54_RS12465	0.20	+0.7
2,781,635	+		LRK54_RS12465	0.20	+0.6
2,781,635	+		LRK54_RS12465	0.20	-0.5
2,781,635	+		LRK54_RS12465	0.20	-0.4
2,781,636	-		LRK54_RS12465	0.20	+0.4
2,781,636	-		LRK54_RS12465	0.20	-1.2
2,781,636	-		LRK54_RS12465	0.20	+0.2
2,781,636	-		LRK54_RS12465	0.20	-0.3
2,781,636	-		LRK54_RS12465	0.20	+2.8
2,781,636	-		LRK54_RS12465	0.20	+0.3
2,781,636	-		LRK54_RS12465	0.20	+0.5
2,781,636	-		LRK54_RS12465	0.20	+0.6
2,781,636	-		LRK54_RS12465	0.20	+1.0
2,781,636	-		LRK54_RS12465	0.20	+0.3
2,781,677	+		LRK54_RS12465	0.29	+0.7
2,781,677	+		LRK54_RS12465	0.29	-0.7
2,781,677	+		LRK54_RS12465	0.29	+0.0
2,781,677	+		LRK54_RS12465	0.29	+0.7
2,781,677	+		LRK54_RS12465	0.29	+1.4
2,781,677	+		LRK54_RS12465	0.29	+1.4
2,781,678	-		LRK54_RS12465	0.29	+1.0
2,781,678	-		LRK54_RS12465	0.29	-0.1
2,781,678	-		LRK54_RS12465	0.29	+0.8
2,781,678	-		LRK54_RS12465	0.29	+1.9
2,781,678	-		LRK54_RS12465	0.29	-0.1
2,781,678	-		LRK54_RS12465	0.29	+0.3
2,781,731	+		LRK54_RS12465	0.40	+0.3
2,781,731	+		LRK54_RS12465	0.40	+0.4
2,781,731	+		LRK54_RS12465	0.40	+0.1
2,781,731	+		LRK54_RS12465	0.40	-0.8
2,781,731	+		LRK54_RS12465	0.40	-1.3
2,781,731	+		LRK54_RS12465	0.40	+0.2
2,781,731	+		LRK54_RS12465	0.40	+0.6
2,781,731	+		LRK54_RS12465	0.40	+2.7
2,781,731	+		LRK54_RS12465	0.40	+0.5
2,781,731	+		LRK54_RS12465	0.40	-0.2
2,781,731	+		LRK54_RS12465	0.40	-1.6
2,781,731	+		LRK54_RS12465	0.40	+0.2
2,781,731	+		LRK54_RS12465	0.40	+1.0
2,781,731	+		LRK54_RS12465	0.40	+1.1
2,781,731	+		LRK54_RS12465	0.40	+1.3
2,781,731	+		LRK54_RS12465	0.40	+1.5
2,781,731	+		LRK54_RS12465	0.40	-0.8
2,781,731	+		LRK54_RS12465	0.40	+1.5
2,781,731	+		LRK54_RS12465	0.40	+1.1
2,781,731	+		LRK54_RS12465	0.40	+0.7
2,781,731	+		LRK54_RS12465	0.40	+0.3
2,781,731	+		LRK54_RS12465	0.40	+0.7
2,781,732	-		LRK54_RS12465	0.41	-0.3
2,781,732	-		LRK54_RS12465	0.41	+0.6
2,781,732	-		LRK54_RS12465	0.41	-0.7
2,781,732	-		LRK54_RS12465	0.41	+1.3
2,781,732	-		LRK54_RS12465	0.41	+0.7
2,781,732	-		LRK54_RS12465	0.41	+1.1
2,781,732	-		LRK54_RS12465	0.41	+1.3
2,781,732	-		LRK54_RS12465	0.41	+1.5
2,781,732	-		LRK54_RS12465	0.41	+1.5
2,781,732	-		LRK54_RS12465	0.41	+0.9
2,781,732	-		LRK54_RS12465	0.41	+1.6
2,781,732	-		LRK54_RS12465	0.41	-0.8
2,781,732	-		LRK54_RS12465	0.41	+0.4
2,781,735	-		LRK54_RS12465	0.41	-1.3
2,781,849	+		LRK54_RS12465	0.66	+0.8
2,781,849	+		LRK54_RS12465	0.66	+1.3
2,781,850	-		LRK54_RS12465	0.66	-0.3
2,781,896	+		LRK54_RS12465	0.76	+0.7
2,781,896	+		LRK54_RS12465	0.76	+0.9
2,781,896	+		LRK54_RS12465	0.76	+0.1
2,781,896	+		LRK54_RS12465	0.76	+3.3
2,781,896	+		LRK54_RS12465	0.76	+0.7
2,781,896	+		LRK54_RS12465	0.76	+0.3
2,781,896	+		LRK54_RS12465	0.76	+0.9
2,781,896	+		LRK54_RS12465	0.76	+1.1
2,781,896	+		LRK54_RS12465	0.76	-0.6
2,781,896	+		LRK54_RS12465	0.76	-0.3
2,781,896	+		LRK54_RS12465	0.76	+2.1
2,781,896	+		LRK54_RS12465	0.76	+0.3
2,781,896	+		LRK54_RS12465	0.76	+1.2
2,781,896	+		LRK54_RS12465	0.76	+0.7
2,781,896	+		LRK54_RS12465	0.76	+0.7
2,781,897	-		LRK54_RS12465	0.76	-0.1
2,781,897	-		LRK54_RS12465	0.76	-0.4
2,781,897	-		LRK54_RS12465	0.76	+0.7
2,781,897	-		LRK54_RS12465	0.76	+0.1
2,781,897	-		LRK54_RS12465	0.76	+0.4
2,781,897	-		LRK54_RS12465	0.76	-0.5
2,781,897	-		LRK54_RS12465	0.76	+1.2
2,781,897	-		LRK54_RS12465	0.76	+1.0
2,781,897	-		LRK54_RS12465	0.76	+0.5
2,781,897	-		LRK54_RS12465	0.76	-0.8
2,781,897	-		LRK54_RS12465	0.76	-2.3
2,781,897	-		LRK54_RS12465	0.76	-0.3
2,781,897	-		LRK54_RS12465	0.76	+0.4
2,781,897	-		LRK54_RS12465	0.76	-0.8
2,781,897	-		LRK54_RS12465	0.76	-0.0
2,781,897	-		LRK54_RS12465	0.76	+0.3
2,781,897	-		LRK54_RS12465	0.76	+0.6
2,781,897	-		LRK54_RS12465	0.76	-2.3
2,781,897	-		LRK54_RS12465	0.76	+0.7
2,781,897	-		LRK54_RS12465	0.76	+0.5
2,781,897	-		LRK54_RS12465	0.76	+2.3
2,781,902	+		LRK54_RS12465	0.77	-0.3
2,781,902	+		LRK54_RS12465	0.77	-0.8
2,781,902	+		LRK54_RS12465	0.77	-0.3
2,781,902	+		LRK54_RS12465	0.77	+0.4
2,781,903	-		LRK54_RS12465	0.77	+0.5
2,781,985	+				+0.8
2,781,985	+				+0.2
2,781,985	+				-0.8
2,782,031	+				-0.6
2,782,031	+				-2.3
2,782,031	+				+0.7
2,782,031	+				+0.3
2,782,031	+				+0.7
2,782,031	+				+0.2
2,782,031	+				-1.7
2,782,031	+				-0.8
2,782,031	+				-0.3
2,782,031	+				+0.3
2,782,031	+				+0.7
2,782,031	+				+0.2
2,782,031	+				-0.3
2,782,031	+				-1.0
2,782,031	+				-0.3
2,782,031	+				+0.1
2,782,031	+				-1.1
2,782,031	+				-0.8
2,782,031	+				-0.2
2,782,031	+				+0.1
2,782,031	+				+0.8
2,782,031	+				+1.0
2,782,031	+				-1.0
2,782,031	+				-0.2
2,782,031	+				+1.3
2,782,031	+				-0.3
2,782,031	+				-1.0
2,782,031	+				-0.8
2,782,031	+				+1.2
2,782,031	+				-0.5
2,782,031	+				+0.4
2,782,031	+				+0.2
2,782,031	+				-1.3
2,782,031	+				-1.6
2,782,031	+				+1.2
2,782,031	+				-2.3
2,782,031	+				-0.8
2,782,031	+				-0.1
2,782,031	+				-1.3
2,782,031	+				-0.3
2,782,031	+				+0.3
2,782,031	+				-1.4
2,782,031	+				-0.3
2,782,031	+				-2.1
2,782,031	+				+0.3
2,782,031	+				-0.2
2,782,031	+				-0.2
2,782,031	+				-0.1
2,782,031	+				-0.5
2,782,031	+				-0.5
2,782,031	+				+0.4
2,782,031	+				-0.3
2,782,032	-				-1.0
2,782,032	-				+1.0
2,782,032	-				+0.7
2,782,032	-				+1.7
2,782,032	-				-1.6
2,782,032	-				-0.4
2,782,032	-				-1.6
2,782,032	-				-0.3
2,782,032	-				+1.0
2,782,032	-				-0.8
2,782,032	-				-0.4
2,782,032	-				+1.0
2,782,032	-				+0.7
2,782,032	-				+1.3
2,782,032	-				-0.6
2,782,032	-				+1.7
2,782,032	-				-0.4
2,782,032	-				-1.0
2,782,032	-				+0.1
2,782,032	-				+0.6
2,782,032	-				+0.1
2,782,032	-				+0.2
2,782,032	-				-0.3
2,782,032	-				+0.3
2,782,032	-				+0.2
2,782,032	-				+0.2
2,782,032	-				-1.5
2,782,032	-				+0.1
2,782,032	-				+1.2
2,782,032	-				-0.6
2,782,032	-				+0.2
2,782,032	-				-1.0
2,782,032	-				+1.6
2,782,032	-				+0.3
2,782,032	-				+0.3
2,782,032	-				+0.6
2,782,032	-				-0.0
2,782,032	-				+0.0
2,782,032	-				-0.7
2,782,032	-				+0.0
2,782,032	-				+0.7
2,782,033	+				+0.4
2,782,033	+				+0.2
2,782,033	+				-0.7
2,782,033	+				-0.3
2,782,033	+				-0.5
2,782,034	-				+1.2
2,782,034	-				-0.8
2,782,034	-				+1.7
2,782,111	+				+0.3
2,782,112	+				-0.7
2,782,112	+				+0.4
2,782,112	+				-0.8
2,782,112	+				+0.4
2,782,112	+				-1.6
2,782,112	+				-0.5
2,782,112	+				+0.7
2,782,113	-				-0.1
2,782,113	-				-0.3
2,782,113	-				-0.3
2,782,113	-				-1.1
2,782,113	-				+0.0
2,782,113	-				+1.2
2,782,113	-				-0.7
2,782,160	+		LRK54_RS12470	0.12	+0.8
2,782,160	+		LRK54_RS12470	0.12	-0.7
2,782,160	+		LRK54_RS12470	0.12	-0.2
2,782,160	+		LRK54_RS12470	0.12	+0.1
2,782,160	+		LRK54_RS12470	0.12	-0.2
2,782,160	+		LRK54_RS12470	0.12	+1.1
2,782,160	+		LRK54_RS12470	0.12	+0.2
2,782,160	+		LRK54_RS12470	0.12	-1.3
2,782,160	+		LRK54_RS12470	0.12	-1.3
2,782,160	+		LRK54_RS12470	0.12	+0.7
2,782,160	+		LRK54_RS12470	0.12	-0.3
2,782,160	+		LRK54_RS12470	0.12	-0.2
2,782,160	+		LRK54_RS12470	0.12	+0.5
2,782,160	+		LRK54_RS12470	0.12	-0.1
2,782,160	+		LRK54_RS12470	0.12	-1.0
2,782,161	-		LRK54_RS12470	0.12	+0.5
2,782,161	-		LRK54_RS12470	0.12	-0.6
2,782,161	-		LRK54_RS12470	0.12	-1.0
2,782,161	-		LRK54_RS12470	0.12	+0.7
2,782,161	-		LRK54_RS12470	0.12	+0.7
2,782,161	-		LRK54_RS12470	0.12	-0.7
2,782,161	-		LRK54_RS12470	0.12	+0.0
2,782,161	-		LRK54_RS12470	0.12	-0.3
2,782,161	-		LRK54_RS12470	0.12	+0.7
2,782,161	-		LRK54_RS12470	0.12	+1.3
2,782,161	-		LRK54_RS12470	0.12	-0.3
2,782,161	-		LRK54_RS12470	0.12	-0.5