Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS12305

Experiment: R2A with SpecU metal mix 1 X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with SpecU metal mix 1 X
2,736,050	-		LRK54_RS12295	0.41	+0.7
2,736,283	+		LRK54_RS12295	0.68	-0.8
2,736,283	+		LRK54_RS12295	0.68	+1.7
2,736,283	+		LRK54_RS12295	0.68	-2.8
2,736,283	+		LRK54_RS12295	0.68	-2.3
2,736,283	+		LRK54_RS12295	0.68	+2.7
2,736,283	+		LRK54_RS12295	0.68	-0.8
2,736,283	+		LRK54_RS12295	0.68	+2.3
2,736,283	+		LRK54_RS12295	0.68	-1.6
2,736,284	-		LRK54_RS12295	0.68	-0.8
2,736,284	-		LRK54_RS12295	0.68	-1.6
2,736,284	-		LRK54_RS12295	0.68	-2.6
2,736,284	-		LRK54_RS12295	0.68	-0.8
2,736,545	+				-1.3
2,736,545	+				-0.8
2,736,545	+				-0.8
2,736,546	-				-0.8
2,736,546	-				-1.3
2,736,549	+				-1.7
2,736,549	+				-1.3
2,736,549	+				-1.6
2,736,549	+				-1.3
2,736,549	+				-0.3
2,736,549	+				-0.8
2,736,549	+				-2.1
2,736,549	+				-0.8
2,736,550	-				-0.8
2,736,550	-				+0.2
2,736,550	-				-2.1
2,736,550	-				-1.1
2,736,550	-				-2.7
2,736,550	-				-2.4
2,736,583	-				-1.6
2,736,583	-				-0.6
2,736,653	+		LRK54_RS12300	0.21	-0.8
2,736,653	+		LRK54_RS12300	0.21	+0.7
2,736,654	-		LRK54_RS12300	0.22	+3.3
2,736,654	-		LRK54_RS12300	0.22	+2.3
2,736,654	-		LRK54_RS12300	0.22	-0.8
2,736,654	-		LRK54_RS12300	0.22	+0.4
2,736,654	-		LRK54_RS12300	0.22	+0.9
2,736,654	-		LRK54_RS12300	0.22	-1.3
2,736,654	-		LRK54_RS12300	0.22	-0.3
2,736,704	+		LRK54_RS12300	0.35	-1.3
2,736,704	+		LRK54_RS12300	0.35	+0.7
2,736,704	+		LRK54_RS12300	0.35	-1.6
2,736,704	+		LRK54_RS12300	0.35	+0.7
2,736,704	+		LRK54_RS12300	0.35	-0.3
2,736,705	-		LRK54_RS12300	0.35	-0.3
2,736,705	-		LRK54_RS12300	0.35	-0.3
2,736,705	-		LRK54_RS12300	0.35	-1.3
2,736,705	-		LRK54_RS12300	0.35	+0.1
2,736,705	-		LRK54_RS12300	0.35	-1.5
2,736,850	-		LRK54_RS12300	0.73	-0.8
2,736,858	-		LRK54_RS12300	0.75	-1.1
2,736,858	-		LRK54_RS12300	0.75	-0.3
2,736,869	+		LRK54_RS12300	0.78	-1.6
2,736,869	+		LRK54_RS12300	0.78	-0.3
2,736,869	+		LRK54_RS12300	0.78	-1.7
2,736,870	-		LRK54_RS12300	0.78	-1.0
2,736,870	-		LRK54_RS12300	0.78	-1.0
2,736,870	-		LRK54_RS12300	0.78	-2.3
2,736,870	-		LRK54_RS12300	0.78	+0.7
2,736,935	+				-1.8
2,736,935	+				-2.1
2,736,935	+				-1.8
2,736,935	+				+0.4
2,736,936	-				-0.1
2,736,936	-				+0.7
2,736,936	-				-2.8
2,736,936	-				+0.0
2,736,936	-				-1.8
2,736,965	+				-0.5
2,736,965	+				-0.8
2,736,965	+				-0.6
2,736,965	+				-0.0
2,736,965	+				+0.7
2,736,965	+				+1.0
2,736,965	+				+0.3
2,736,965	+				+0.7
2,736,965	+				+0.3
2,736,965	+				-0.5
2,736,965	+				+0.1
2,736,965	+				-2.4
2,736,965	+				+1.2
2,736,965	+				-0.0
2,736,965	+				-0.3
2,736,965	+				+1.9
2,736,965	+				+0.7
2,736,965	+				+0.5
2,736,965	+				+0.5
2,736,965	+				+0.1
2,736,965	+				+0.6
2,736,965	+				+0.9
2,736,965	+				-0.1
2,736,965	+				-0.0
2,736,965	+				-0.5
2,736,965	+				+0.2
2,736,966	-				-0.3
2,736,966	-				+0.3
2,736,966	-				+0.6
2,736,966	-				+0.1
2,736,966	-				-0.5
2,736,966	-				-0.4
2,736,966	-				+1.3
2,736,966	-				+0.6
2,736,966	-				+0.1
2,737,037	+				+0.2
2,737,037	+				+0.4
2,737,038	-				+0.7
2,737,038	-				+0.1
2,737,038	-				+0.1
2,737,038	-				-1.3
2,737,358	+		LRK54_RS12305	0.42	-0.8
2,737,358	+		LRK54_RS12305	0.42	-0.3
2,737,358	+		LRK54_RS12305	0.42	-3.1
2,737,358	+		LRK54_RS12305	0.42	+0.2
2,737,358	+		LRK54_RS12305	0.42	-1.1
2,737,358	+		LRK54_RS12305	0.42	-1.0
2,737,359	-		LRK54_RS12305	0.42	+0.2
2,737,359	-		LRK54_RS12305	0.42	-1.3
2,737,359	-		LRK54_RS12305	0.42	-1.8
2,737,359	-		LRK54_RS12305	0.42	-0.0
2,737,359	-		LRK54_RS12305	0.42	-0.6
2,737,359	-		LRK54_RS12305	0.42	-0.1
2,737,478	+		LRK54_RS12305	0.58	-1.3
2,737,478	+		LRK54_RS12305	0.58	-1.6
2,737,478	+		LRK54_RS12305	0.58	-1.3
2,737,478	+		LRK54_RS12305	0.58	-1.6
2,737,478	+		LRK54_RS12305	0.58	-1.2
2,737,478	+		LRK54_RS12305	0.58	-2.1
2,737,478	+		LRK54_RS12305	0.58	-2.1
2,737,478	+		LRK54_RS12305	0.58	+0.7
2,737,478	+		LRK54_RS12305	0.58	-1.5
2,737,478	+		LRK54_RS12305	0.58	-0.6
2,737,478	+		LRK54_RS12305	0.58	-0.4
2,737,478	+		LRK54_RS12305	0.58	-0.5
2,737,478	+		LRK54_RS12305	0.58	-1.9
2,737,478	+		LRK54_RS12305	0.58	-0.8
2,737,478	+		LRK54_RS12305	0.58	+1.3
2,737,478	+		LRK54_RS12305	0.58	-2.1
2,737,478	+		LRK54_RS12305	0.58	+0.9
2,737,478	+		LRK54_RS12305	0.58	-0.1
2,737,478	+		LRK54_RS12305	0.58	-0.3
2,737,478	+		LRK54_RS12305	0.58	-2.4
2,737,478	+		LRK54_RS12305	0.58	-0.8
2,737,478	+				-0.3
2,737,478	+		LRK54_RS12305	0.58	+0.7
2,737,478	+		LRK54_RS12305	0.58	-2.6
2,737,478	+		LRK54_RS12305	0.58	-0.1
2,737,478	+		LRK54_RS12305	0.58	-1.3
2,737,478	+		LRK54_RS12305	0.58	-1.6
2,737,478	+		LRK54_RS12305	0.58	-0.5
2,737,478	+		LRK54_RS12305	0.58	-1.6
2,737,478	+		LRK54_RS12305	0.58	-2.4
2,737,478	+		LRK54_RS12305	0.58	-0.7
2,737,478	+		LRK54_RS12305	0.58	-0.8
2,737,478	+		LRK54_RS12305	0.58	+0.7
2,737,478	+		LRK54_RS12305	0.58	-1.8
2,737,479	-		LRK54_RS12305	0.58	-3.0
2,737,479	-		LRK54_RS12305	0.58	+0.7
2,737,479	-		LRK54_RS12305	0.58	-0.5
2,737,479	-		LRK54_RS12305	0.58	-1.8
2,737,479	-		LRK54_RS12305	0.58	-0.3
2,737,479	-		LRK54_RS12305	0.58	-0.2
2,737,479	-		LRK54_RS12305	0.58	+0.7
2,737,479	-		LRK54_RS12305	0.58	-1.8
2,737,479	-		LRK54_RS12305	0.58	-3.7
2,737,479	-		LRK54_RS12305	0.58	+0.1
2,737,479	-		LRK54_RS12305	0.58	+0.7
2,737,479	-		LRK54_RS12305	0.58	-2.2
2,737,479	-		LRK54_RS12305	0.58	-1.1
2,737,479	-		LRK54_RS12305	0.58	+1.7
2,737,479	-		LRK54_RS12305	0.58	-0.6
2,737,479	-		LRK54_RS12305	0.58	-0.3
2,737,479	-		LRK54_RS12305	0.58	+0.2
2,737,479	-		LRK54_RS12305	0.58	-1.3
2,737,479	-		LRK54_RS12305	0.58	-0.8
2,737,479	-		LRK54_RS12305	0.58	-1.8
2,737,479	-		LRK54_RS12305	0.58	-2.0
2,737,479	-		LRK54_RS12305	0.58	-0.3
2,737,479	-		LRK54_RS12305	0.58	-0.3
2,737,479	-		LRK54_RS12305	0.58	-2.8
2,737,479	-		LRK54_RS12305	0.58	+0.5
2,737,479	-		LRK54_RS12305	0.58	-1.6
2,737,479	-		LRK54_RS12305	0.58	+0.7
2,737,479	-		LRK54_RS12305	0.58	-0.4
2,737,479	-		LRK54_RS12305	0.58	-1.3
2,737,479	-		LRK54_RS12305	0.58	-2.1
2,737,479	-		LRK54_RS12305	0.58	-0.3
2,737,479	-		LRK54_RS12305	0.58	-2.4
2,737,479	-		LRK54_RS12305	0.58	-3.0
2,737,479	-		LRK54_RS12305	0.58	-0.5
2,737,479	-		LRK54_RS12305	0.58	+0.3
2,737,479	-		LRK54_RS12305	0.58	-0.3
2,737,479	-		LRK54_RS12305	0.58	-1.8
2,737,479	-		LRK54_RS12305	0.58	-2.3
2,737,479	-		LRK54_RS12305	0.58	+0.7
2,737,479	-		LRK54_RS12305	0.58	-2.4
2,737,479	-		LRK54_RS12305	0.58	-2.2
2,737,479	-		LRK54_RS12305	0.58	+0.7
2,737,479	-		LRK54_RS12305	0.58	-0.8
2,737,479	-		LRK54_RS12305	0.58	-2.1
2,737,479	-		LRK54_RS12305	0.58	-1.5
2,737,479	-		LRK54_RS12305	0.58	-0.6
2,737,479	-		LRK54_RS12305	0.58	-0.6
2,737,481	+		LRK54_RS12305	0.58	-3.5
2,737,481	+		LRK54_RS12305	0.58	-0.8
2,737,481	+		LRK54_RS12305	0.58	+0.2
2,737,481	+		LRK54_RS12305	0.58	-0.8
2,737,481	+		LRK54_RS12305	0.58	-1.4
2,737,481	+		LRK54_RS12305	0.58	+0.2
2,737,481	+		LRK54_RS12305	0.58	-1.6
2,737,481	+		LRK54_RS12305	0.58	-1.6
2,737,482	-		LRK54_RS12305	0.58	-1.3
2,737,482	-		LRK54_RS12305	0.58	-3.0
2,737,482	-		LRK54_RS12305	0.58	-0.3
2,737,482	-		LRK54_RS12305	0.58	-2.3
2,737,482	-		LRK54_RS12305	0.58	-0.8
2,737,482	-		LRK54_RS12305	0.58	-1.0
2,737,757	+				-2.3
2,737,757	+				-0.3
2,737,757	+				-0.3
2,737,757	+				-0.8
2,737,757	+				-2.6
2,737,757	+				+0.5
2,737,758	-				-0.5
2,737,758	-				-1.8
2,737,758	-				-0.8
2,737,758	-				+0.7