Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS11765

Experiment: R2A with SpecU metal mix 1 X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with SpecU metal mix 1 X
2,607,115	+				+0.7
2,607,115	+				+0.7
2,607,115	+				-0.3
2,607,202	+				+0.6
2,607,203	-				-1.4
2,607,203	-				-1.9
2,607,203	-				+0.9
2,607,219	+				-0.0
2,607,219	+				-1.3
2,607,219	+				+0.7
2,607,220	-				-0.3
2,607,220	-				+0.3
2,607,220	-				+0.3
2,607,415	+		LRK54_RS11760	0.19	-0.9
2,607,415	+		LRK54_RS11760	0.19	-1.1
2,607,416	-		LRK54_RS11760	0.19	-0.9
2,607,446	+		LRK54_RS11760	0.23	-3.0
2,607,446	+		LRK54_RS11760	0.23	-1.9
2,607,446	+		LRK54_RS11760	0.23	-0.6
2,607,446	+		LRK54_RS11760	0.23	+1.7
2,607,446	+		LRK54_RS11760	0.23	-0.5
2,607,446	+		LRK54_RS11760	0.23	+0.7
2,607,446	+		LRK54_RS11760	0.23	-0.4
2,607,446	+		LRK54_RS11760	0.23	-0.9
2,607,446	+		LRK54_RS11760	0.23	-1.3
2,607,446	+		LRK54_RS11760	0.23	-0.3
2,607,446	+		LRK54_RS11760	0.23	-0.4
2,607,446	+		LRK54_RS11760	0.23	-0.9
2,607,446	+		LRK54_RS11760	0.23	-1.1
2,607,446	+		LRK54_RS11760	0.23	-0.7
2,607,446	+		LRK54_RS11760	0.23	+0.1
2,607,446	+		LRK54_RS11760	0.23	-0.3
2,607,446	+		LRK54_RS11760	0.23	-2.0
2,607,446	+		LRK54_RS11760	0.23	-1.6
2,607,446	+		LRK54_RS11760	0.23	-0.9
2,607,447	-		LRK54_RS11760	0.23	+0.7
2,607,447	-		LRK54_RS11760	0.23	-1.0
2,607,447	-		LRK54_RS11760	0.23	+0.1
2,607,447	-		LRK54_RS11760	0.23	-2.4
2,607,447	-		LRK54_RS11760	0.23	-0.3
2,607,447	-		LRK54_RS11760	0.23	-0.3
2,607,447	-		LRK54_RS11760	0.23	+1.0
2,607,447	-		LRK54_RS11760	0.23	-1.2
2,607,447	-		LRK54_RS11760	0.23	-0.6
2,607,447	-		LRK54_RS11760	0.23	-1.6
2,607,447	-		LRK54_RS11760	0.23	-2.6
2,607,447	-		LRK54_RS11760	0.23	-1.3
2,607,447	-		LRK54_RS11760	0.23	+0.5
2,607,447	-		LRK54_RS11760	0.23	-0.9
2,607,447	-		LRK54_RS11760	0.23	+0.1
2,607,447	-		LRK54_RS11760	0.23	-0.4
2,607,447	-		LRK54_RS11760	0.23	-1.5
2,607,447	-		LRK54_RS11760	0.23	-1.7
2,607,447	-		LRK54_RS11760	0.23	-0.6
2,607,447	-		LRK54_RS11760	0.23	-3.0
2,607,447	-		LRK54_RS11760	0.23	-1.0
2,607,512	+		LRK54_RS11760	0.31	-0.3
2,607,512	+		LRK54_RS11760	0.31	-0.1
2,607,512	+		LRK54_RS11760	0.31	+0.3
2,607,512	+		LRK54_RS11760	0.31	+0.3
2,607,512	+		LRK54_RS11760	0.31	-2.4
2,607,512	+		LRK54_RS11760	0.31	-1.0
2,607,512	+		LRK54_RS11760	0.31	+0.7
2,607,512	+		LRK54_RS11760	0.31	+0.1
2,607,512	+		LRK54_RS11760	0.31	-0.6
2,607,512	+		LRK54_RS11760	0.31	-1.3
2,607,512	+		LRK54_RS11760	0.31	-0.3
2,607,512	+		LRK54_RS11760	0.31	-0.9
2,607,512	+		LRK54_RS11760	0.31	+0.7
2,607,512	+		LRK54_RS11760	0.31	-0.9
2,607,512	+		LRK54_RS11760	0.31	-1.3
2,607,512	+		LRK54_RS11760	0.31	-1.4
2,607,512	+		LRK54_RS11760	0.31	-0.9
2,607,512	+		LRK54_RS11760	0.31	-0.3
2,607,512	+		LRK54_RS11760	0.31	-1.9
2,607,512	+		LRK54_RS11760	0.31	-1.4
2,607,512	+		LRK54_RS11760	0.31	-0.2
2,607,512	+		LRK54_RS11760	0.31	+0.9
2,607,512	+		LRK54_RS11760	0.31	-0.6
2,607,512	+		LRK54_RS11760	0.31	-0.9
2,607,513	-		LRK54_RS11760	0.31	-1.0
2,607,513	-		LRK54_RS11760	0.31	-0.6
2,607,513	-		LRK54_RS11760	0.31	-3.2
2,607,513	-		LRK54_RS11760	0.31	-0.5
2,607,513	-		LRK54_RS11760	0.31	+0.1
2,607,513	-		LRK54_RS11760	0.31	-0.9
2,607,513	-		LRK54_RS11760	0.31	-0.6
2,607,513	-		LRK54_RS11760	0.31	-3.1
2,607,513	-		LRK54_RS11760	0.31	-2.1
2,607,513	-		LRK54_RS11760	0.31	-0.3
2,607,513	-		LRK54_RS11760	0.31	-0.5
2,607,513	-		LRK54_RS11760	0.31	-2.6
2,607,513	-		LRK54_RS11760	0.31	-1.8
2,607,513	-		LRK54_RS11760	0.31	+1.1
2,607,513	-		LRK54_RS11760	0.31	+1.1
2,607,513	-		LRK54_RS11760	0.31	-1.6
2,607,513	-		LRK54_RS11760	0.31	-1.7
2,607,513	-		LRK54_RS11760	0.31	-0.3
2,607,513	-		LRK54_RS11760	0.31	-1.1
2,607,513	-		LRK54_RS11760	0.31	+0.1
2,607,513	-		LRK54_RS11760	0.31	-0.3
2,607,513	-		LRK54_RS11760	0.31	+0.7
2,607,513	-		LRK54_RS11760	0.31	-1.6
2,607,513	-		LRK54_RS11760	0.31	-1.0
2,607,536	+		LRK54_RS11760	0.34	-2.3
2,607,536	+		LRK54_RS11760	0.34	-0.4
2,607,536	+		LRK54_RS11760	0.34	-0.3
2,607,536	+		LRK54_RS11760	0.34	-0.3
2,607,536	+		LRK54_RS11760	0.34	-1.9
2,607,536	+		LRK54_RS11760	0.34	-0.2
2,607,537	-		LRK54_RS11760	0.34	-1.3
2,607,537	-		LRK54_RS11760	0.34	-1.3
2,607,537	-		LRK54_RS11760	0.34	-1.7
2,607,773	+		LRK54_RS11760	0.62	-3.0
2,607,773	+		LRK54_RS11760	0.62	-0.7
2,607,774	-		LRK54_RS11760	0.62	-0.3
2,607,774	-		LRK54_RS11760	0.62	+1.7
2,607,774	-		LRK54_RS11760	0.62	-0.9
2,607,774	-		LRK54_RS11760	0.62	-0.9
2,607,774	-		LRK54_RS11760	0.62	-1.1
2,607,774	-		LRK54_RS11760	0.62	+0.7
2,608,052	+				+0.7
2,608,052	+				-0.4
2,608,052	+				-0.9
2,608,053	-				+0.7
2,608,053	-				-1.4
2,608,053	-				-0.9
2,608,053	-				-1.9
2,608,053	-				-0.7
2,608,053	-				-1.2
2,608,053	-				+0.2
2,608,053	-				+0.7
2,608,053	-				-0.3
2,608,202	-		LRK54_RS11765	0.15	-2.7
2,608,202	-		LRK54_RS11765	0.15	-0.6
2,608,306	+		LRK54_RS11765	0.28	-0.8
2,608,306	+		LRK54_RS11765	0.28	-1.1
2,608,306	+		LRK54_RS11765	0.28	+1.7
2,608,307	-		LRK54_RS11765	0.28	-1.1
2,608,307	-		LRK54_RS11765	0.28	-1.1
2,608,307	-		LRK54_RS11765	0.28	-0.7
2,608,307	-		LRK54_RS11765	0.28	-1.3
2,608,307	-		LRK54_RS11765	0.28	-2.1
2,608,307	-		LRK54_RS11765	0.28	-1.6
2,608,307	-		LRK54_RS11765	0.28	-0.3
2,608,307	-		LRK54_RS11765	0.28	-1.3
2,608,307	-		LRK54_RS11765	0.28	-0.1
2,608,369	+		LRK54_RS11765	0.36	+0.0
2,608,369	+		LRK54_RS11765	0.36	-0.3
2,608,369	+		LRK54_RS11765	0.36	-1.5
2,608,370	-		LRK54_RS11765	0.36	-3.1
2,608,370	-		LRK54_RS11765	0.36	-0.7
2,608,370	-		LRK54_RS11765	0.36	-1.7
2,608,370	-		LRK54_RS11765	0.36	+1.3
2,608,370	-		LRK54_RS11765	0.36	-1.3
2,608,507	+		LRK54_RS11765	0.54	-1.8
2,608,507	+		LRK54_RS11765	0.54	-2.0
2,608,507	+		LRK54_RS11765	0.54	-0.7
2,608,507	+		LRK54_RS11765	0.54	-1.3
2,608,507	+		LRK54_RS11765	0.54	-3.5
2,608,508	-		LRK54_RS11765	0.54	-1.8
2,608,508	-		LRK54_RS11765	0.54	+2.1
2,608,508	-		LRK54_RS11765	0.54	-0.6
2,608,508	-		LRK54_RS11765	0.54	+0.0
2,608,508	-		LRK54_RS11765	0.54	-2.8
2,608,508	-		LRK54_RS11765	0.54	-1.3
2,608,508	-		LRK54_RS11765	0.54	-1.3
2,608,565	+		LRK54_RS11765	0.62	-1.5
2,608,565	+		LRK54_RS11765	0.62	-1.3
2,608,565	+		LRK54_RS11765	0.62	-1.8
2,608,565	+		LRK54_RS11765	0.62	-3.4
2,608,565	+		LRK54_RS11765	0.62	+0.7
2,608,565	+		LRK54_RS11765	0.62	+0.0
2,608,565	+		LRK54_RS11765	0.62	-2.8
2,608,565	+		LRK54_RS11765	0.62	-0.3
2,608,565	+		LRK54_RS11765	0.62	-2.6
2,608,566	-		LRK54_RS11765	0.62	-3.0
2,608,566	-		LRK54_RS11765	0.62	-1.3
2,608,566	-		LRK54_RS11765	0.62	-0.3
2,608,566	-		LRK54_RS11765	0.62	-1.8
2,608,566	-		LRK54_RS11765	0.62	-2.3
2,608,566	-		LRK54_RS11765	0.62	-2.6
2,608,783	+		LRK54_RS11765	0.90	-0.8
2,608,783	+		LRK54_RS11765	0.90	-1.1
2,608,783	+		LRK54_RS11765	0.90	+0.0
2,608,783	+		LRK54_RS11765	0.90	-1.3
2,608,783	+		LRK54_RS11765	0.90	-2.6
2,608,783	+		LRK54_RS11765	0.90	+2.3
2,608,784	-		LRK54_RS11765	0.90	+0.2
2,608,784	-		LRK54_RS11765	0.90	-0.8
2,608,784	-		LRK54_RS11765	0.90	-1.8
2,608,784	-		LRK54_RS11765	0.90	-0.7
2,608,784	-		LRK54_RS11765	0.90	-0.8
2,608,784	-		LRK54_RS11765	0.90	-1.5
2,608,784	-		LRK54_RS11765	0.90	-1.3
2,608,919	+				-0.5
2,608,919	+				-2.3
2,608,919	+				-0.1
2,608,919	+				-1.8
2,608,920	-				-0.8
2,608,970	+				-1.7
2,608,970	+				+0.7
2,608,971	-				+1.7
2,608,971	-				-1.5
2,608,971	-				-2.6
2,608,971	-				-1.7
2,608,971	-				-0.6
2,608,971	-				-0.1
2,609,021	+		LRK54_RS11770	0.14	-1.1
2,609,021	+		LRK54_RS11770	0.14	-1.0
2,609,021	+		LRK54_RS11770	0.14	-1.4
2,609,021	+		LRK54_RS11770	0.14	-0.7
2,609,021	+		LRK54_RS11770	0.14	-1.1
2,609,021	+		LRK54_RS11770	0.14	-1.1
2,609,021	+		LRK54_RS11770	0.14	-0.8
2,609,021	+		LRK54_RS11770	0.14	-1.4
2,609,021	+		LRK54_RS11770	0.14	-1.5
2,609,021	+		LRK54_RS11770	0.14	-0.8
2,609,021	+		LRK54_RS11770	0.14	+1.3
2,609,021	+		LRK54_RS11770	0.14	-1.3
2,609,021	+		LRK54_RS11770	0.14	-1.1
2,609,021	+		LRK54_RS11770	0.14	-1.4
2,609,021	+		LRK54_RS11770	0.14	-1.1
2,609,021	+		LRK54_RS11770	0.14	-1.0
2,609,021	+		LRK54_RS11770	0.14	-0.8
2,609,021	+		LRK54_RS11770	0.14	-1.8
2,609,021	+		LRK54_RS11770	0.14	-2.8
2,609,021	+		LRK54_RS11770	0.14	-1.1
2,609,021	+		LRK54_RS11770	0.14	-0.6
2,609,022	-		LRK54_RS11770	0.15	-0.6
2,609,022	-		LRK54_RS11770	0.15	-0.5
2,609,022	-		LRK54_RS11770	0.15	-0.5
2,609,022	-		LRK54_RS11770	0.15	+0.0
2,609,022	-		LRK54_RS11770	0.15	+0.7
2,609,022	-		LRK54_RS11770	0.15	-0.7
2,609,022	-		LRK54_RS11770	0.15	-0.9
2,609,022	-		LRK54_RS11770	0.15	+0.2
2,609,022	-		LRK54_RS11770	0.15	-2.0
2,609,022	-		LRK54_RS11770	0.15	+0.7
2,609,022	-		LRK54_RS11770	0.15	-0.8
2,609,022	-		LRK54_RS11770	0.15	-2.3
2,609,022	-		LRK54_RS11770	0.15	-0.6
2,609,022	-		LRK54_RS11770	0.15	-0.7
2,609,022	-		LRK54_RS11770	0.15	-0.8
2,609,022	-		LRK54_RS11770	0.15	+0.3
2,609,022	-		LRK54_RS11770	0.15	-1.3
2,609,022	-		LRK54_RS11770	0.15	-1.5
2,609,022	-		LRK54_RS11770	0.15	-0.8
2,609,022	-		LRK54_RS11770	0.15	-1.0
2,609,022	-		LRK54_RS11770	0.15	-1.5
2,609,022	-		LRK54_RS11770	0.15	-0.3
2,609,022	-		LRK54_RS11770	0.15	-2.1
2,609,022	-		LRK54_RS11770	0.15	-1.6
2,609,022	-		LRK54_RS11770	0.15	-3.0
2,609,022	-		LRK54_RS11770	0.15	-1.8
2,609,022	-		LRK54_RS11770	0.15	+0.7
2,609,022	-		LRK54_RS11770	0.15	-1.6
2,609,022	-		LRK54_RS11770	0.15	-0.3
2,609,022	-		LRK54_RS11770	0.15	-1.4
2,609,022	-		LRK54_RS11770	0.15	-1.6
2,609,022	-		LRK54_RS11770	0.15	+0.2
2,609,022	-		LRK54_RS11770	0.15	-2.3
2,609,022	-		LRK54_RS11770	0.15	-0.8
2,609,171	+		LRK54_RS11770	0.32	-0.8
2,609,171	+		LRK54_RS11770	0.32	-0.9
2,609,171	+		LRK54_RS11770	0.32	-1.5
2,609,171	+		LRK54_RS11770	0.32	-3.0
2,609,171	+				+0.7
2,609,171	+		LRK54_RS11770	0.32	-0.6
2,609,171	+		LRK54_RS11770	0.32	-2.6
2,609,171	+		LRK54_RS11770	0.32	+0.2
2,609,171	+		LRK54_RS11770	0.32	-1.0
2,609,171	+		LRK54_RS11770	0.32	-0.8
2,609,171	+		LRK54_RS11770	0.32	-0.3
2,609,171	+		LRK54_RS11770	0.32	-0.8
2,609,171	+		LRK54_RS11770	0.32	+1.3
2,609,171	+		LRK54_RS11770	0.32	-0.5
2,609,171	+		LRK54_RS11770	0.32	-0.3
2,609,171	+		LRK54_RS11770	0.32	-0.1
2,609,171	+		LRK54_RS11770	0.32	-0.7
2,609,171	+		LRK54_RS11770	0.32	-1.3
2,609,171	+		LRK54_RS11770	0.32	-1.0
2,609,171	+		LRK54_RS11770	0.32	-0.8
2,609,171	+		LRK54_RS11770	0.32	-1.0
2,609,171	+		LRK54_RS11770	0.32	-0.8
2,609,172	-		LRK54_RS11770	0.32	+1.2
2,609,172	-		LRK54_RS11770	0.32	-0.7
2,609,172	-		LRK54_RS11770	0.32	-2.3
2,609,172	-		LRK54_RS11770	0.32	-0.5
2,609,172	-		LRK54_RS11770	0.32	-0.2
2,609,172	-		LRK54_RS11770	0.32	-1.6
2,609,172	-		LRK54_RS11770	0.32	-0.8
2,609,172	-		LRK54_RS11770	0.32	+0.5
2,609,172	-		LRK54_RS11770	0.32	+0.3
2,609,172	-		LRK54_RS11770	0.32	-1.3
2,609,172	-		LRK54_RS11770	0.32	-1.3
2,609,172	-		LRK54_RS11770	0.32	-1.8
2,609,172	-		LRK54_RS11770	0.32	-0.4
2,609,172	-		LRK54_RS11770	0.32	-1.6
2,609,172	-		LRK54_RS11770	0.32	-2.4
2,609,172	-		LRK54_RS11770	0.32	-2.1
2,609,172	-		LRK54_RS11770	0.32	-1.3
2,609,172	-		LRK54_RS11770	0.32	-0.7
2,609,172	-		LRK54_RS11770	0.32	-1.1
2,609,172	-		LRK54_RS11770	0.32	+0.1
2,609,172	-		LRK54_RS11770	0.32	-0.8
2,609,172	-		LRK54_RS11770	0.32	-2.1
2,609,172	-		LRK54_RS11770	0.32	-1.6
2,609,234	+		LRK54_RS11770	0.39	-0.3
2,609,234	+		LRK54_RS11770	0.39	-1.6
2,609,234	+		LRK54_RS11770	0.39	-2.3
2,609,234	+		LRK54_RS11770	0.39	-1.2
2,609,234	+		LRK54_RS11770	0.39	-0.6
2,609,234	+		LRK54_RS11770	0.39	+0.0
2,609,234	+		LRK54_RS11770	0.39	-2.1
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2,609,234	+		LRK54_RS11770	0.39	+0.5
2,609,234	+		LRK54_RS11770	0.39	-2.1
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2,609,235	-		LRK54_RS11770	0.40	+0.3
2,609,235	-		LRK54_RS11770	0.40	-2.7
2,609,235	-		LRK54_RS11770	0.40	+0.7
2,609,235	-		LRK54_RS11770	0.40	-2.1
2,609,235	-		LRK54_RS11770	0.40	+0.2
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2,609,235	-		LRK54_RS11770	0.40	-1.3
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2,609,235	-		LRK54_RS11770	0.40	-2.1
2,609,235	-		LRK54_RS11770	0.40	-1.1
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2,609,235	-		LRK54_RS11770	0.40	-1.1
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2,609,235	-		LRK54_RS11770	0.40	-1.7
2,609,249	+		LRK54_RS11770	0.41	-0.8
2,609,249	+		LRK54_RS11770	0.41	-0.3
2,609,378	+		LRK54_RS11770	0.56	+1.1
2,609,378	+		LRK54_RS11770	0.56	-0.6
2,609,378	+		LRK54_RS11770	0.56	-1.6
2,609,378	+		LRK54_RS11770	0.56	-1.6
2,609,378	+		LRK54_RS11770	0.56	-0.1
2,609,378	+		LRK54_RS11770	0.56	-2.7
2,609,378	+		LRK54_RS11770	0.56	-1.0
2,609,378	+		LRK54_RS11770	0.56	-2.3
2,609,378	+		LRK54_RS11770	0.56	-1.6
2,609,378	+		LRK54_RS11770	0.56	-2.3
2,609,378	+		LRK54_RS11770	0.56	-1.3
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2,609,378	+		LRK54_RS11770	0.56	-1.3
2,609,379	-		LRK54_RS11770	0.56	-0.3
2,609,379	-		LRK54_RS11770	0.56	-0.6
2,609,379	-		LRK54_RS11770	0.56	-0.1
2,609,379	-		LRK54_RS11770	0.56	-0.5
2,609,379	-		LRK54_RS11770	0.56	-0.1
2,609,379	-		LRK54_RS11770	0.56	+2.3
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2,609,379	-		LRK54_RS11770	0.56	-1.6
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2,609,529	-		LRK54_RS11770	0.74	-1.0
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2,609,529	-		LRK54_RS11770	0.74	-1.3
2,609,591	+		LRK54_RS11770	0.81	-0.7
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2,609,591	+		LRK54_RS11770	0.81	-0.5
2,609,591	+		LRK54_RS11770	0.81	-2.7
2,609,591	+		LRK54_RS11770	0.81	-2.1
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2,609,592	-		LRK54_RS11770	0.81	-2.3
2,609,592	-		LRK54_RS11770	0.81	+0.1
2,609,592	-		LRK54_RS11770	0.81	-3.0
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2,609,592	-		LRK54_RS11770	0.81	-2.3
2,609,592	-		LRK54_RS11770	0.81	+0.7
2,609,747	+				+0.7
2,609,747	+				+0.1
2,609,747	+				+0.7
2,609,747	+				+1.4
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