Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS11565

Experiment: R2A with SpecU metal mix 1 X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with SpecU metal mix 1 X
2,568,510	+		LRK54_RS11555	0.82	-1.3
2,568,510	+		LRK54_RS11555	0.82	-0.3
2,568,510	+		LRK54_RS11555	0.82	+0.4
2,568,510	+		LRK54_RS11555	0.82	-0.5
2,568,510	+		LRK54_RS11555	0.82	+0.5
2,568,510	+		LRK54_RS11555	0.82	-1.3
2,568,511	-		LRK54_RS11555	0.82	-0.3
2,568,511	-		LRK54_RS11555	0.82	-1.2
2,568,511	-		LRK54_RS11555	0.82	-1.9
2,568,511	-		LRK54_RS11555	0.82	+0.7
2,568,511	-		LRK54_RS11555	0.82	-0.1
2,568,511	-		LRK54_RS11555	0.82	+1.7
2,568,660	-				+0.3
2,568,703	-				-0.0
2,568,807	+				+0.6
2,568,807	+				-0.5
2,568,807	+				+0.4
2,568,807	+				-0.9
2,568,807	+				-0.9
2,568,807	+				-0.6
2,568,807	+				+0.1
2,568,808	-				+0.7
2,568,808	-				+0.1
2,568,808	-				-0.0
2,568,808	-				-0.2
2,568,808	-				-0.5
2,568,808	-				-0.6
2,568,808	-				+0.5
2,568,808	-				-0.1
2,568,808	-				+0.7
2,568,826	-				-1.3
2,568,826	-				+1.7
2,568,869	+				+0.7
2,568,869	+				-1.2
2,568,869	+				+0.2
2,568,869	+				-0.1
2,568,869	+				+0.0
2,568,870	-				-2.3
2,568,870	-				-0.9
2,568,870	-				+0.1
2,568,870	-				-2.0
2,568,870	-				+0.7
2,568,870	-				-0.8
2,568,895	+				+0.3
2,568,895	+				-2.1
2,568,895	+				-0.3
2,568,895	+				-1.3
2,568,895	+				-0.2
2,568,895	+				-0.9
2,568,895	+				-0.9
2,568,895	+				-0.3
2,568,896	-				-0.3
2,568,896	-				-2.3
2,568,896	-				-1.7
2,568,896	-				+0.7
2,568,896	-				+0.7
2,568,896	-				-0.3
2,568,896	-				-3.2
2,568,896	-				-0.4
2,568,910	+				-3.0
2,568,911	-				-0.3
2,568,911	-				-1.3
2,568,911	-				-2.0
2,568,911	-				-0.3
2,568,925	+				-1.3
2,568,925	+				+0.5
2,569,011	+		LRK54_RS11560	0.23	-1.9
2,569,011	+		LRK54_RS11560	0.23	-1.3
2,569,011	+		LRK54_RS11560	0.23	+0.4
2,569,011	+		LRK54_RS11560	0.23	-0.8
2,569,011	+		LRK54_RS11560	0.23	-1.1
2,569,011	+		LRK54_RS11560	0.23	-2.1
2,569,012	-		LRK54_RS11560	0.23	-1.3
2,569,012	-		LRK54_RS11560	0.23	-0.4
2,569,012	-		LRK54_RS11560	0.23	-0.9
2,569,012	-		LRK54_RS11560	0.23	-1.3
2,569,012	-		LRK54_RS11560	0.23	-1.4
2,569,012	-		LRK54_RS11560	0.23	+1.9
2,570,024	+		LRK54_RS11565	0.53	-1.3
2,570,232	+		LRK54_RS11565	0.72	-0.9
2,570,232	+		LRK54_RS11565	0.72	-0.7
2,570,232	+		LRK54_RS11565	0.72	-2.6
2,570,232	+		LRK54_RS11565	0.72	-0.3
2,570,391	+		LRK54_RS11565	0.87	-2.1
2,570,391	+		LRK54_RS11565	0.87	-2.2
2,570,391	+		LRK54_RS11565	0.87	-0.9
2,570,391	+		LRK54_RS11565	0.87	-3.0
2,570,392	-		LRK54_RS11565	0.88	-2.4
2,570,392	-		LRK54_RS11565	0.88	-1.4
2,570,392	-		LRK54_RS11565	0.88	-0.6
2,570,392	-		LRK54_RS11565	0.88	-0.9
2,570,392	-		LRK54_RS11565	0.88	-0.3
2,570,392	-		LRK54_RS11565	0.88	-0.3
2,570,520	+				-0.1
2,570,520	+				-1.6
2,570,520	+				+2.9
2,570,520	+				-1.9
2,570,521	-				+0.2
2,570,521	-				-1.4
2,570,521	-				+1.1
2,570,527	+				-0.4
2,570,527	+				-0.1
2,570,527	+				+0.5
2,570,527	+				+0.5
2,570,527	+				-0.1
2,570,527	+				-1.0
2,570,527	+				+0.4
2,570,527	+				+0.4
2,570,527	+				+0.1
2,570,527	+				-0.6
2,570,527	+				-0.9
2,570,527	+				+0.1
2,570,527	+				-0.2
2,570,527	+				+1.5
2,570,527	+				-0.9
2,570,527	+				+0.7
2,570,527	+				-0.7
2,570,527	+				-0.0
2,570,527	+				+0.1
2,570,527	+				+2.3
2,570,527	+				-0.2
2,570,527	+				+0.0
2,570,527	+				+0.9
2,570,527	+				-0.3
2,570,527	+				-2.0
2,570,527	+				+0.3
2,570,527	+				-0.6
2,570,527	+				-0.0
2,570,527	+				+0.2
2,570,528	-				-0.3
2,570,528	-				-0.4
2,570,528	-				-0.3
2,570,528	-				-0.0
2,570,528	-				-0.4
2,570,528	-				-1.3
2,570,528	-				+0.9
2,570,528	-				-0.2
2,570,528	-				+1.9
2,570,528	-				-0.3
2,570,528	-				-1.3
2,570,528	-				+0.4
2,570,528	-				-0.9
2,570,528	-				-0.9
2,570,528	-				+0.0
2,570,528	-				-0.4
2,570,528	-				-0.5
2,570,528	-				+0.4
2,570,528	-				+0.0
2,570,528	-				-0.4
2,570,528	-				-1.1
2,570,528	-				+0.6
2,570,528	-				-1.7
2,570,528	-				-0.5
2,570,528	-				+0.3
2,570,528	-				+0.1
2,570,528	-				-0.9
2,570,528	-				-0.5
2,570,528	-				-0.1
2,570,528	-				-0.6
2,570,528	-				+0.7
2,570,528	-				+0.5
2,570,528	-				-0.1
2,570,528	-				-1.9
2,570,528	-				+0.2
2,570,595	+				-0.9
2,570,596	-				+0.7
2,570,596	-				+0.1
2,570,596	-				-0.5
2,570,596	-				-1.6
2,570,859	+		LRK54_RS11570	0.31	-2.1
2,570,859	+		LRK54_RS11570	0.31	-0.9
2,570,859	+		LRK54_RS11570	0.31	-0.3
2,570,859	+		LRK54_RS11570	0.31	-1.9
2,570,859	+		LRK54_RS11570	0.31	-2.1
2,570,859	+		LRK54_RS11570	0.31	-2.4
2,570,860	-		LRK54_RS11570	0.31	-1.6
2,570,860	-		LRK54_RS11570	0.31	-1.7
2,570,860	-		LRK54_RS11570	0.31	-1.1
2,570,860	-		LRK54_RS11570	0.31	+0.7
2,570,860	-		LRK54_RS11570	0.31	+0.7
2,570,994	+		LRK54_RS11570	0.48	-1.6
2,571,252	+		LRK54_RS11570	0.80	-1.9
2,571,252	+		LRK54_RS11570	0.80	-0.7
2,571,252	+		LRK54_RS11570	0.80	-1.1
2,571,323	+		LRK54_RS11570	0.89	+0.5