Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS11405

Experiment: R2A with SpecU metal mix 1 X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with SpecU metal mix 1 X
2,524,855	+		LRK54_RS11395	0.44	-0.9
2,524,855	+		LRK54_RS11395	0.44	-2.9
2,524,855	+		LRK54_RS11395	0.44	-2.9
2,524,855	+		LRK54_RS11395	0.44	-2.1
2,524,855	+		LRK54_RS11395	0.44	-2.4
2,524,855	+		LRK54_RS11395	0.44	-1.9
2,524,855	+		LRK54_RS11395	0.44	-1.4
2,524,855	+		LRK54_RS11395	0.44	-1.7
2,524,855	+		LRK54_RS11395	0.44	-3.4
2,524,855	+		LRK54_RS11395	0.44	-3.0
2,524,855	+		LRK54_RS11395	0.44	-1.6
2,524,856	-		LRK54_RS11395	0.44	-1.5
2,524,856	-		LRK54_RS11395	0.44	-3.0
2,524,856	-		LRK54_RS11395	0.44	-2.5
2,524,856	-		LRK54_RS11395	0.44	-2.9
2,524,856	-		LRK54_RS11395	0.44	-2.9
2,524,856	-		LRK54_RS11395	0.44	-0.9
2,524,856	-		LRK54_RS11395	0.44	-2.5
2,524,856	-		LRK54_RS11395	0.44	-1.9
2,525,406	+		LRK54_RS11400	0.29	+1.2
2,525,406	+		LRK54_RS11400	0.29	+0.4
2,525,406	+		LRK54_RS11400	0.29	-0.2
2,525,406	+		LRK54_RS11400	0.29	+0.1
2,525,406	+		LRK54_RS11400	0.29	+0.5
2,525,406	+		LRK54_RS11400	0.29	+0.7
2,525,406	+		LRK54_RS11400	0.29	-0.9
2,525,406	+		LRK54_RS11400	0.29	-0.0
2,525,406	+		LRK54_RS11400	0.29	-0.6
2,525,406	+		LRK54_RS11400	0.29	+1.5
2,525,406	+		LRK54_RS11400	0.29	+1.2
2,525,406	+		LRK54_RS11400	0.29	-1.5
2,525,406	+		LRK54_RS11400	0.29	+0.0
2,525,406	+		LRK54_RS11400	0.29	+0.4
2,525,406	+		LRK54_RS11400	0.29	-0.7
2,525,406	+		LRK54_RS11400	0.29	+1.7
2,525,406	+		LRK54_RS11400	0.29	-0.3
2,525,406	+		LRK54_RS11400	0.29	-0.0
2,525,406	+		LRK54_RS11400	0.29	+0.1
2,525,406	+		LRK54_RS11400	0.29	-0.1
2,525,406	+		LRK54_RS11400	0.29	+1.4
2,525,406	+		LRK54_RS11400	0.29	+0.6
2,525,406	+		LRK54_RS11400	0.29	+0.3
2,525,406	+		LRK54_RS11400	0.29	+1.2
2,525,406	+		LRK54_RS11400	0.29	+0.3
2,525,406	+		LRK54_RS11400	0.29	-1.9
2,525,407	-		LRK54_RS11400	0.29	-0.8
2,525,407	-		LRK54_RS11400	0.29	-1.9
2,525,407	-		LRK54_RS11400	0.29	+0.3
2,525,407	-		LRK54_RS11400	0.29	+0.1
2,525,407	-		LRK54_RS11400	0.29	-1.0
2,525,407	-		LRK54_RS11400	0.29	-0.0
2,525,407	-		LRK54_RS11400	0.29	-0.7
2,525,407	-		LRK54_RS11400	0.29	-0.6
2,525,407	-		LRK54_RS11400	0.29	-0.2
2,525,407	-		LRK54_RS11400	0.29	-0.9
2,525,407	-		LRK54_RS11400	0.29	+0.1
2,525,407	-		LRK54_RS11400	0.29	-1.0
2,525,407	-		LRK54_RS11400	0.29	-1.0
2,525,407	-		LRK54_RS11400	0.29	-0.1
2,525,407	-		LRK54_RS11400	0.29	+1.3
2,525,407	-		LRK54_RS11400	0.29	-0.6
2,525,407	-		LRK54_RS11400	0.29	-1.6
2,525,407	-		LRK54_RS11400	0.29	-1.3
2,525,407	-		LRK54_RS11400	0.29	+0.5
2,525,407	-		LRK54_RS11400	0.29	+0.1
2,525,407	-		LRK54_RS11400	0.29	+0.6
2,525,407	-		LRK54_RS11400	0.29	-1.9
2,525,407	-		LRK54_RS11400	0.29	-0.5
2,525,407	-		LRK54_RS11400	0.29	-0.4
2,525,407	-		LRK54_RS11400	0.29	-0.9
2,525,439	+		LRK54_RS11400	0.35	+0.7
2,525,439	+		LRK54_RS11400	0.35	+0.7
2,525,439	+		LRK54_RS11400	0.35	-0.7
2,525,439	+		LRK54_RS11400	0.35	-0.5
2,525,439	+		LRK54_RS11400	0.35	+0.4
2,525,439	+		LRK54_RS11400	0.35	+1.3
2,525,439	+		LRK54_RS11400	0.35	+0.3
2,525,440	-		LRK54_RS11400	0.35	-2.4
2,525,440	-		LRK54_RS11400	0.35	-0.5
2,525,440	-		LRK54_RS11400	0.35	-0.3
2,525,544	+		LRK54_RS11400	0.53	+0.0
2,525,544	+		LRK54_RS11400	0.53	-0.9
2,525,573	-		LRK54_RS11400	0.58	+0.2
2,525,622	+		LRK54_RS11400	0.66	-0.1
2,525,622	+		LRK54_RS11400	0.66	+0.0
2,525,623	-		LRK54_RS11400	0.66	+0.3
2,525,623	-		LRK54_RS11400	0.66	+0.7
2,525,623	-		LRK54_RS11400	0.66	+0.2
2,525,623	-		LRK54_RS11400	0.66	+0.1
2,525,623	-		LRK54_RS11400	0.66	+0.2
2,525,623	-		LRK54_RS11400	0.66	-0.6
2,525,623	-		LRK54_RS11400	0.66	-0.2
2,525,623	-		LRK54_RS11400	0.66	+0.1
2,525,679	-		LRK54_RS11400	0.76	+0.6
2,525,679	-		LRK54_RS11400	0.76	-0.1
2,525,901	+				-2.4
2,525,901	+				-0.3
2,525,901	+				-0.1
2,525,901	+				+0.7
2,525,901	+				-2.7
2,525,901	+				-0.6
2,525,902	-				-1.3
2,525,902	-				-0.5
2,525,902	-				-0.9
2,525,902	-				-1.6
2,525,902	-				-0.8
2,525,902	-				-1.9
2,525,902	-				-2.2
2,525,902	-				-0.7
2,525,902	-				+1.7
2,525,902	-				-1.9
2,525,902	-				-0.9
2,525,902	-				-1.6
2,525,902	-				-0.3
2,525,902	-				-0.0
2,525,902	-				+0.7
2,525,902	-				+0.7
2,526,027	+				-3.1
2,526,027	+				-0.9
2,526,027	+				-1.6
2,526,027	+				-2.4
2,526,027	+				-3.0
2,526,027	+				-3.6
2,526,027	+				-3.2
2,526,027	+				-1.9
2,526,027	+				-0.9
2,526,028	-				-2.4
2,526,028	-				-3.2
2,526,028	-				-3.2
2,526,028	-				-1.5
2,526,028	-				-2.2
2,526,028	-				-2.1
2,526,028	-				-1.1
2,526,028	-				-1.3
2,526,028	-				-2.4
2,526,028	-				-3.2
2,526,028	-				-1.1
2,526,067	-		LRK54_RS11405	0.12	-1.5
2,526,162	+		LRK54_RS11405	0.16	-0.7
2,526,162	+		LRK54_RS11405	0.16	-2.7
2,526,162	+		LRK54_RS11405	0.16	-3.0
2,526,162	+		LRK54_RS11405	0.16	-2.1
2,526,163	-		LRK54_RS11405	0.16	+0.7
2,526,163	-		LRK54_RS11405	0.16	-2.5
2,526,273	+		LRK54_RS11405	0.22	-0.3
2,526,273	+		LRK54_RS11405	0.22	-0.9
2,526,444	+		LRK54_RS11405	0.30	-3.6
2,526,444	+		LRK54_RS11405	0.30	-1.2
2,526,444	+		LRK54_RS11405	0.30	+0.1
2,526,444	+		LRK54_RS11405	0.30	-1.9
2,526,445	-		LRK54_RS11405	0.30	-1.8
2,526,501	+		LRK54_RS11405	0.33	-0.6
2,526,501	+		LRK54_RS11405	0.33	-3.1
2,526,502	-		LRK54_RS11405	0.33	-3.1
2,526,502	-		LRK54_RS11405	0.33	-2.9
2,526,502	-		LRK54_RS11405	0.33	-3.3
2,526,502	-		LRK54_RS11405	0.33	-1.5
2,526,502	-		LRK54_RS11405	0.33	-1.3
2,526,502	-		LRK54_RS11405	0.33	-1.6
2,526,502	-		LRK54_RS11405	0.33	-1.9
2,526,657	+		LRK54_RS11405	0.41	-3.5
2,526,657	+		LRK54_RS11405	0.41	-2.5
2,526,658	-		LRK54_RS11405	0.41	-3.1
2,526,658	-		LRK54_RS11405	0.41	-2.6
2,526,658	-		LRK54_RS11405	0.41	-2.3
2,527,146	+		LRK54_RS11405	0.65	-1.1
2,527,146	+		LRK54_RS11405	0.65	-2.7
2,527,146	+		LRK54_RS11405	0.65	-0.9
2,527,146	+		LRK54_RS11405	0.65	-1.5
2,527,146	+		LRK54_RS11405	0.65	-1.2
2,527,146	+		LRK54_RS11405	0.65	-1.6
2,527,146	+		LRK54_RS11405	0.65	-1.1
2,527,147	-		LRK54_RS11405	0.65	-3.0
2,527,147	-		LRK54_RS11405	0.65	-3.0
2,527,147	-		LRK54_RS11405	0.65	+0.7
2,527,147	-		LRK54_RS11405	0.65	-3.2
2,527,147	-		LRK54_RS11405	0.65	-2.8
2,527,147	-		LRK54_RS11405	0.65	-2.8
2,527,155	+		LRK54_RS11405	0.66	-2.3
2,527,155	+		LRK54_RS11405	0.66	-1.6
2,527,155	+		LRK54_RS11405	0.66	-3.4
2,527,155	+		LRK54_RS11405	0.66	-4.8
2,527,155	+		LRK54_RS11405	0.66	-1.6
2,527,155	+		LRK54_RS11405	0.66	-1.8
2,527,155	+		LRK54_RS11405	0.66	-1.3
2,527,269	+		LRK54_RS11405	0.71	-3.8
2,527,269	+		LRK54_RS11405	0.71	-3.2
2,527,269	+		LRK54_RS11405	0.71	-3.1
2,527,722	+				-2.9
2,527,722	+				-1.6
2,527,722	+				-3.0
2,527,722	+				-2.7
2,527,722	+				-5.3
2,527,722	+				-0.3
2,527,722	+				-3.4
2,527,722	+				-3.3
2,527,722	+				-2.4
2,527,722	+				-0.7
2,527,722	+				-3.1
2,527,722	+				+0.1
2,527,722	+				-1.7
2,527,722	+				-1.9
2,527,722	+				-3.4
2,527,723	-				-1.9
2,527,723	-				-2.6
2,527,723	-				-2.4
2,527,723	-				-3.0
2,527,723	-				-2.5
2,527,723	-				-2.3
2,527,723	-				-2.8
2,527,723	-				-3.5
2,527,723	-				-1.5
2,527,723	-				-3.0
2,527,723	-				-1.3
2,527,723	-				-4.4
2,527,837	+				-2.3
2,527,879	+				+0.5
2,527,880	-				-0.2
2,527,923	+				-0.2
2,527,957	+				-1.4
2,527,957	+				-2.1
2,527,958	-				-1.3
2,528,012	+				-1.3
2,528,013	-				-1.3
2,528,013	-				-1.4
2,528,013	-				+0.3
2,528,027	+				+0.7
2,528,055	+				+0.7
2,528,055	+				-0.6
2,528,060	+				+1.1
2,528,060	+				-1.2
2,528,060	+				+1.3
2,528,061	-				-0.2
2,528,061	-				-1.3
2,528,061	-				-0.9
2,528,061	-				-1.6
2,528,174	-				-0.0
2,528,184	-				-0.0
2,528,211	+				-2.1
2,528,211	+				+0.1
2,528,212	-				-0.5
2,528,228	+				-0.3
2,528,229	-				-0.5
2,528,229	-				-0.2
2,528,270	+				-1.8
2,528,270	+				-1.6
2,528,270	+				-0.9
2,528,271	-				-0.0
2,528,271	-				+0.1
2,528,275	-				-0.1
2,528,374	+				-0.9
2,528,375	+				-1.1
2,528,375	+				-0.5
2,528,375	+				+0.7
2,528,375	+				-0.1
2,528,375	+				-0.1
2,528,375	+				-0.9
2,528,376	-				+0.4
2,528,376	-				-1.3
2,528,376	-				-0.9
2,528,376	-				+0.0
2,528,376	-				+0.5
2,528,376	-				-0.1
2,528,376	-				+0.5
2,528,376	-				-1.2
2,528,376	-				-0.7
2,528,376	-				+1.7
2,528,377	+				-1.0
2,528,377	+				+0.1
2,528,377	+				-1.6
2,528,377	+				+0.7
2,528,378	-				-0.9
2,528,378	-				+2.3
2,528,378	-				-1.1
2,528,448	+		LRK54_RS11410	0.16	-1.0
2,528,449	-		LRK54_RS11410	0.16	+0.2
2,528,468	+		LRK54_RS11410	0.18	-0.2
2,528,552	+		LRK54_RS11410	0.27	-0.3
2,528,552	+		LRK54_RS11410	0.27	-0.9
2,528,578	-		LRK54_RS11410	0.30	-1.2
2,528,578	-		LRK54_RS11410	0.30	-0.3
2,528,579	+		LRK54_RS11410	0.30	-0.2
2,528,579	+		LRK54_RS11410	0.30	+0.3
2,528,580	-		LRK54_RS11410	0.30	+1.3
2,528,584	+		LRK54_RS11410	0.30	-1.4
2,528,621	-		LRK54_RS11410	0.34	-1.1
2,528,622	+		LRK54_RS11410	0.34	+0.1
2,528,622	+		LRK54_RS11410	0.34	+0.7
2,528,629	-		LRK54_RS11410	0.35	-0.5
2,528,629	-		LRK54_RS11410	0.35	+0.4
2,528,632	-		LRK54_RS11410	0.35	-0.6
2,528,654	-		LRK54_RS11410	0.38	+0.3
2,528,662	+		LRK54_RS11410	0.39	+0.7
2,528,662	+		LRK54_RS11410	0.39	-0.5
2,528,663	-		LRK54_RS11410	0.39	+0.9
2,528,663	-		LRK54_RS11410	0.39	-1.0
2,528,759	+		LRK54_RS11410	0.49	-0.9
2,528,761	+		LRK54_RS11410	0.49	+0.1
2,528,761	+		LRK54_RS11410	0.49	+0.5
2,528,761	+		LRK54_RS11410	0.49	-1.1
2,528,761	+		LRK54_RS11410	0.49	-0.2
2,528,762	-		LRK54_RS11410	0.49	-0.8
2,528,762	-		LRK54_RS11410	0.49	-0.9
2,528,778	+		LRK54_RS11410	0.51	-1.9