Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS11385

Experiment: R2A with SpecU metal mix 1 X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with SpecU metal mix 1 X
2,521,268	+		LRK54_RS11375	0.58	-0.9
2,521,268	+		LRK54_RS11375	0.58	-1.0
2,521,268	+		LRK54_RS11375	0.58	-0.9
2,521,268	+		LRK54_RS11375	0.58	-0.3
2,521,269	-		LRK54_RS11375	0.58	-0.4
2,521,295	+		LRK54_RS11375	0.61	-0.9
2,521,296	-		LRK54_RS11375	0.61	+0.7
2,521,296	-		LRK54_RS11375	0.61	-0.5
2,521,296	-		LRK54_RS11375	0.61	-0.8
2,521,361	+		LRK54_RS11375	0.68	-2.3
2,521,361	+		LRK54_RS11375	0.68	-0.6
2,521,361	+		LRK54_RS11375	0.68	+0.7
2,521,361	+		LRK54_RS11375	0.68	-0.0
2,521,361	+		LRK54_RS11375	0.68	+1.7
2,521,362	-		LRK54_RS11375	0.68	-0.3
2,521,362	-		LRK54_RS11375	0.68	-0.3
2,521,571	+				+0.5
2,521,571	+				-1.6
2,521,571	+				+0.2
2,521,571	+				+2.1
2,521,571	+				-0.3
2,521,571	+				-1.6
2,521,571	+				-0.5
2,521,571	+				-0.7
2,521,572	-				+1.6
2,521,572	-				+0.6
2,521,572	-				-0.5
2,521,572	-				+1.1
2,521,572	-				+0.7
2,521,572	-				-1.1
2,521,572	-				-1.1
2,521,572	-				+1.1
2,521,572	-				-0.5
2,521,681	+				-0.0
2,521,681	+				+1.3
2,521,681	+				+0.2
2,521,681	+				+0.2
2,521,682	-				-0.9
2,521,682	-				-1.1
2,521,682	-				-1.1
2,521,737	+				+0.1
2,521,737	+				+0.5
2,521,737	+				+0.4
2,521,737	+				+0.5
2,521,737	+				+0.1
2,521,737	+				-0.6
2,521,737	+				-0.0
2,521,737	+				+0.3
2,521,738	-				+0.7
2,521,738	-				-0.3
2,521,738	-				-0.4
2,521,738	-				+0.6
2,521,738	-				+0.2
2,521,738	-				-1.3
2,521,738	-				+0.2
2,521,936	+		LRK54_RS11380	0.53	-0.6
2,521,936	+		LRK54_RS11380	0.53	+0.8
2,521,936	+		LRK54_RS11380	0.53	-0.0
2,521,936	+		LRK54_RS11380	0.53	-0.2
2,521,936	+		LRK54_RS11380	0.53	-0.3
2,521,936	+		LRK54_RS11380	0.53	-0.1
2,521,936	+		LRK54_RS11380	0.53	+0.3
2,521,937	-		LRK54_RS11380	0.54	+0.7
2,521,937	-		LRK54_RS11380	0.54	-1.3
2,521,937	-		LRK54_RS11380	0.54	-1.3
2,521,937	-		LRK54_RS11380	0.54	-0.7
2,521,937	-		LRK54_RS11380	0.54	-0.8
2,521,937	-		LRK54_RS11380	0.54	-0.3
2,521,937	-		LRK54_RS11380	0.54	+1.3
2,521,937	-		LRK54_RS11380	0.54	-2.2
2,521,937	-		LRK54_RS11380	0.54	+1.5
2,521,937	-		LRK54_RS11380	0.54	-0.3
2,521,960	+		LRK54_RS11380	0.61	-1.9
2,522,047	+		LRK54_RS11380	0.89	+1.1
2,522,047	+		LRK54_RS11380	0.89	+1.2
2,522,047	+		LRK54_RS11380	0.89	+0.5
2,522,047	+		LRK54_RS11380	0.89	-0.1
2,522,047	+		LRK54_RS11380	0.89	+0.3
2,522,047	+		LRK54_RS11380	0.89	+1.5
2,522,047	+		LRK54_RS11380	0.89	+0.7
2,522,047	+		LRK54_RS11380	0.89	+0.1
2,522,047	+		LRK54_RS11380	0.89	-0.3
2,522,047	+		LRK54_RS11380	0.89	-3.0
2,522,048	-		LRK54_RS11380	0.90	-2.5
2,522,048	-		LRK54_RS11380	0.90	-2.4
2,522,048	-		LRK54_RS11380	0.90	-0.5
2,522,048	-		LRK54_RS11380	0.90	-0.9
2,522,048	-		LRK54_RS11380	0.90	-2.0
2,522,082	+				-2.3
2,522,082	+				-1.1
2,522,082	+				-2.0
2,522,082	+				+0.7
2,522,082	+				-1.0
2,522,082	+				-0.8
2,522,082	+				-0.9
2,522,082	+				-3.2
2,522,082	+				+0.4
2,522,082	+				-0.6
2,522,082	+				+0.7
2,522,082	+				-1.1
2,522,082	+				-0.3
2,522,082	+				-3.2
2,522,082	+				-2.3
2,522,082	+				+1.7
2,522,082	+				-0.3
2,522,083	-				-0.8
2,522,083	-				-2.4
2,522,083	-				-1.6
2,522,083	-				-0.9
2,522,083	-				-0.1
2,522,083	-				+0.1
2,522,083	-				+0.7
2,522,083	-				-1.3
2,522,083	-				-1.6
2,522,083	-				+0.5
2,522,083	-				-0.9
2,522,083	-				-0.9
2,522,083	-				-1.9
2,522,083	-				-1.9
2,522,083	-				-0.6
2,522,083	-				-0.9
2,522,083	-				-1.1
2,522,083	-				-0.2
2,522,083	-				-0.3
2,522,083	-				-1.1
2,522,083	-				-1.6
2,522,083	-				+0.7
2,522,088	+				-2.3
2,522,088	+				-1.0
2,522,088	+				-1.3
2,522,088	+				-0.9
2,522,088	+				+1.3
2,522,088	+				-0.2
2,522,088	+				-0.6
2,522,088	+				-0.4
2,522,088	+				-2.4
2,522,088	+				-3.1
2,522,088	+				+1.2
2,522,088	+				+0.1
2,522,088	+				-2.1
2,522,088	+				-1.3
2,522,088	+				-1.9
2,522,088	+				+0.9
2,522,088	+				-0.7
2,522,088	+				-3.0
2,522,088	+				-2.3
2,522,088	+				+0.3
2,522,088	+				-0.3
2,522,088	+				-0.5
2,522,088	+				-1.4
2,522,088	+				-0.7
2,522,088	+				+0.7
2,522,088	+				+0.3
2,522,088	+				-1.7
2,522,088	+				+0.3
2,522,088	+				-1.4
2,522,088	+				-0.9
2,522,089	-				+1.3
2,522,089	-				-1.4
2,522,089	-				-0.3
2,522,089	-				-0.9
2,522,089	-				+1.7
2,522,089	-				-0.3
2,522,089	-				+0.7
2,522,089	-				-2.1
2,522,089	-				-0.6
2,522,089	-				-0.7
2,522,089	-				-1.3
2,522,089	-				-2.3
2,522,089	-				+0.7
2,522,089	-				-2.9
2,522,089	-				-1.6
2,522,089	-				-1.6
2,522,089	-				-0.9
2,522,089	-				-1.0
2,522,089	-				-1.9
2,522,089	-				-0.6
2,522,089	-				-0.9
2,522,089	-				-0.5
2,522,089	-				-2.3
2,522,091	-				-0.9
2,522,184	+		LRK54_RS11385	0.13	-0.5
2,522,184	+		LRK54_RS11385	0.13	-2.7
2,522,185	-		LRK54_RS11385	0.14	-1.3
2,522,185	-		LRK54_RS11385	0.14	-0.9
2,522,593	-		LRK54_RS11385	0.64	-1.3
2,522,634	+		LRK54_RS11385	0.69	-0.9
2,522,634	+		LRK54_RS11385	0.69	-2.4
2,522,635	-		LRK54_RS11385	0.69	-2.0
2,522,652	+		LRK54_RS11385	0.71	-0.0
2,522,652	+		LRK54_RS11385	0.71	-0.9
2,522,653	-		LRK54_RS11385	0.71	+2.3
2,522,653	-		LRK54_RS11385	0.71	-1.2
2,522,653	-		LRK54_RS11385	0.71	-0.6
2,522,653	-		LRK54_RS11385	0.71	-0.3
2,522,746	-		LRK54_RS11385	0.83	-0.1
2,522,847	+				-2.7
2,522,847	+				-1.8
2,522,848	-				-1.9
2,522,880	+				+1.4
2,522,880	+				-0.3
2,522,880	+				+0.7
2,522,880	+				+0.1
2,522,880	+				+0.2
2,522,880	+				-0.4
2,522,880	+				+0.4
2,522,881	-				+1.0
2,522,881	-				-0.8
2,522,881	-				-0.3
2,522,881	-				+0.5
2,522,881	-				+0.5
2,522,881	-				-2.9
2,522,881	-				+0.4
2,522,881	-				+0.7
2,522,881	-				-0.0
2,522,881	-				+0.8
2,522,964	+				+1.7
2,522,964	+				+0.8
2,522,964	+				-0.8
2,522,964	+				-0.6
2,522,964	+				+0.5
2,522,964	+				+1.6
2,522,964	+				+0.9
2,522,964	+				-0.0
2,522,964	+				-0.8
2,522,964	+				-0.4
2,522,964	+				+0.7
2,522,964	+				-0.7
2,522,964	+				-0.7
2,522,964	+				-0.3
2,522,964	+				-0.4
2,522,965	-				-0.6
2,522,965	-				+0.2
2,522,965	-				+1.7
2,522,965	-				-0.1
2,522,965	-				+2.3
2,522,965	-				+0.1
2,522,965	-				-0.6
2,522,984	-				-0.3
2,522,984	-				-1.1
2,522,985	-				-1.1
2,523,812	+				-1.2
2,523,812	+				-0.9
2,523,812	+				+0.7
2,523,812	+				-0.1
2,523,812	+				+0.3
2,523,813	-				+1.3
2,523,813	-				+0.6
2,523,813	-				+0.5
2,523,813	-				-0.1