Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS11290

Experiment: R2A with SpecU metal mix 1 X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with SpecU metal mix 1 X
2,504,255	+		LRK54_RS11285	0.55	-1.4
2,504,255	+		LRK54_RS11285	0.55	-0.9
2,504,255	+		LRK54_RS11285	0.55	-0.9
2,504,255	+		LRK54_RS11285	0.55	-1.7
2,504,255	+		LRK54_RS11285	0.55	-1.9
2,504,255	+		LRK54_RS11285	0.55	+0.3
2,504,255	+		LRK54_RS11285	0.55	-1.3
2,504,256	-		LRK54_RS11285	0.55	-1.0
2,504,256	-		LRK54_RS11285	0.55	-2.4
2,504,256	-		LRK54_RS11285	0.55	-0.7
2,504,256	-		LRK54_RS11285	0.55	+0.3
2,504,256	-		LRK54_RS11285	0.55	-0.3
2,504,256	-		LRK54_RS11285	0.55	-0.0
2,504,256	-		LRK54_RS11285	0.55	-0.9
2,504,256	-		LRK54_RS11285	0.55	-2.3
2,504,399	+		LRK54_RS11285	0.71	-0.6
2,504,424	-		LRK54_RS11285	0.74	+0.9
2,504,624	+				-1.6
2,504,624	+				-0.5
2,504,624	+				-0.8
2,504,624	+				-3.0
2,504,624	+				-0.7
2,504,624	+				-0.4
2,504,624	+				-1.3
2,504,624	+				-1.2
2,504,624	+				-1.0
2,504,625	-				-0.3
2,504,625	-				-0.5
2,504,625	-				-0.4
2,504,625	-				-2.7
2,504,625	-				-0.9
2,504,625	-				-1.3
2,504,703	+				-0.9
2,504,703	+				-0.5
2,504,703	+				-1.3
2,504,703	+				+1.5
2,504,703	+				-0.4
2,504,703	+				-0.6
2,504,704	-				-0.1
2,504,704	-				+0.3
2,504,704	-				-0.4
2,504,704	-				+0.7
2,504,704	-				-0.4
2,504,745	+				+0.7
2,504,745	+				-2.2
2,504,745	+				-2.5
2,504,745	+				-2.1
2,504,745	+				-2.4
2,504,745	+				-0.7
2,504,745	+				-1.3
2,504,745	+				-0.9
2,504,745	+				-0.8
2,504,745	+				-0.5
2,504,745	+				-0.5
2,504,745	+				-0.4
2,504,745	+				-1.1
2,504,745	+				+0.1
2,504,746	-				-3.2
2,504,746	-				-0.8
2,504,746	-				+0.1
2,504,746	-				+0.7
2,504,746	-				-0.9
2,504,746	-				-1.4
2,504,746	-				-0.4
2,504,746	-				+0.4
2,504,746	-				-0.3
2,504,796	+				-0.4
2,504,796	+				+2.1
2,504,796	+				+2.3
2,504,796	+				-0.2
2,504,797	-				+0.1
2,504,818	+				-0.8
2,504,818	+				-0.3
2,504,818	+				+1.1
2,504,819	-				-0.3
2,504,819	-				+2.3
2,504,819	-				-1.0
2,504,834	+				-0.1
2,504,834	+				-0.9
2,504,834	+				-2.3
2,504,834	+				-1.6
2,504,834	+				-0.3
2,504,834	+				-1.1
2,504,834	+				-2.3
2,504,834	+				-0.3
2,504,834	+				-0.3
2,504,834	+				-0.9
2,504,834	+				-1.6
2,504,834	+				-1.3
2,504,834	+				-1.9
2,504,834	+				+0.7
2,504,834	+				-1.9
2,504,834	+				-0.5
2,504,834	+				+0.3
2,504,834	+				-0.9
2,504,835	-				-1.6
2,504,835	-				-0.3
2,504,835	-				-2.3
2,504,835	-				-0.3
2,504,835	-				-1.9
2,504,835	-				-2.3
2,504,835	-				-1.6
2,505,025	+		LRK54_RS11290	0.10	-0.3
2,505,025	+		LRK54_RS11290	0.10	-2.7
2,505,454	-		LRK54_RS11290	0.41	-0.6
2,505,849	+		LRK54_RS11290	0.70	-1.6
2,505,850	-		LRK54_RS11290	0.70	-0.9
2,506,051	-		LRK54_RS11290	0.84	-2.1
2,506,051	-		LRK54_RS11290	0.84	-1.7
2,506,173	+				-0.3
2,506,173	+				-2.3
2,506,174	-				-0.9