Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS11175

Experiment: R2A with SpecU metal mix 1 X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with SpecU metal mix 1 X
2,481,155	+		LRK54_RS11170	0.67	+0.7
2,481,155	+		LRK54_RS11170	0.67	-0.9
2,481,155	+		LRK54_RS11170	0.67	-0.9
2,481,155	+		LRK54_RS11170	0.67	-2.4
2,481,167	+		LRK54_RS11170	0.67	-1.9
2,481,167	+		LRK54_RS11170	0.67	-2.1
2,481,167	+		LRK54_RS11170	0.67	-0.9
2,481,168	-		LRK54_RS11170	0.67	-0.3
2,481,168	-		LRK54_RS11170	0.67	-3.3
2,481,168	-		LRK54_RS11170	0.67	-0.9
2,481,168	-		LRK54_RS11170	0.67	+1.7
2,481,305	+		LRK54_RS11170	0.73	-1.3
2,481,305	+		LRK54_RS11170	0.73	+0.7
2,481,306	-		LRK54_RS11170	0.73	+0.7
2,481,306	-		LRK54_RS11170	0.73	-0.9
2,481,323	+		LRK54_RS11170	0.74	-0.3
2,481,323	+		LRK54_RS11170	0.74	-1.6
2,481,324	-		LRK54_RS11170	0.74	-2.6
2,481,410	+		LRK54_RS11170	0.78	-2.6
2,481,410	+		LRK54_RS11170	0.78	-0.9
2,481,410	+		LRK54_RS11170	0.78	-0.3
2,481,410	+		LRK54_RS11170	0.78	-0.9
2,481,410	+		LRK54_RS11170	0.78	-2.1
2,481,410	+		LRK54_RS11170	0.78	-0.3
2,481,410	+		LRK54_RS11170	0.78	-1.6
2,481,411	-		LRK54_RS11170	0.78	+0.7
2,481,411	-		LRK54_RS11170	0.78	-0.3
2,481,411	-		LRK54_RS11170	0.78	-0.3
2,481,411	-		LRK54_RS11170	0.78	-0.3
2,481,746	+				-2.4
2,481,746	+				+0.7
2,481,746	+				+0.7
2,481,747	-				-0.9
2,481,747	-				-0.3
2,481,747	-				-0.9
2,481,747	-				-0.3
2,481,747	-				-0.9
2,481,747	-				-0.3
2,481,747	-				-1.3
2,482,008	+				+0.6
2,482,009	-				-0.6
2,482,281	+				-0.3
2,482,281	+				-0.3
2,482,282	-				+0.7
2,482,282	-				+0.7
2,482,282	-				-2.1
2,482,282	-				-0.9
2,482,282	-				+0.7
2,482,282	-				-1.9
2,482,455	+		LRK54_RS11175	0.13	-0.3
2,482,455	+		LRK54_RS11175	0.13	-1.3
2,482,455	+		LRK54_RS11175	0.13	+0.7
2,482,455	+		LRK54_RS11175	0.13	+0.7
2,482,455	+		LRK54_RS11175	0.13	+0.7
2,482,456	-		LRK54_RS11175	0.13	-0.6
2,482,456	-		LRK54_RS11175	0.13	-1.3
2,482,456	-		LRK54_RS11175	0.13	-0.9
2,482,456	-		LRK54_RS11175	0.13	-0.3
2,482,548	+		LRK54_RS11175	0.17	-2.1
2,482,549	-		LRK54_RS11175	0.17	-1.6
2,482,549	-		LRK54_RS11175	0.17	-1.3
2,482,549	-		LRK54_RS11175	0.17	-2.7
2,482,549	-		LRK54_RS11175	0.17	-0.9
2,482,549	-		LRK54_RS11175	0.17	-2.3
2,482,720	-		LRK54_RS11175	0.23	-2.1
2,482,720	-		LRK54_RS11175	0.23	-0.9
2,482,955	-		LRK54_RS11175	0.32	-0.3
2,483,001	+		LRK54_RS11175	0.33	+0.7
2,483,002	-		LRK54_RS11175	0.33	-1.9
2,483,002	-		LRK54_RS11175	0.33	-0.3
2,483,106	+		LRK54_RS11175	0.37	+0.7
2,483,134	-		LRK54_RS11175	0.38	-0.3
2,483,221	-		LRK54_RS11175	0.41	-2.9
2,483,229	+		LRK54_RS11175	0.42	-1.6
2,483,428	-				-1.6
2,483,428	-		LRK54_RS11175	0.49	-0.3
2,483,430	+		LRK54_RS11175	0.49	-0.9
2,483,430	+		LRK54_RS11175	0.49	-1.3
2,483,430	+		LRK54_RS11175	0.49	-1.9
2,483,431	-		LRK54_RS11175	0.49	-0.9
2,483,431	-		LRK54_RS11175	0.49	-0.9
2,483,463	+		LRK54_RS11175	0.50	-0.9
2,483,463	+		LRK54_RS11175	0.50	-1.3
2,483,463	+		LRK54_RS11175	0.50	-3.2
2,483,463	+		LRK54_RS11175	0.50	-0.3
2,483,463	+		LRK54_RS11175	0.50	+1.3
2,483,463	+		LRK54_RS11175	0.50	+0.7
2,483,463	+		LRK54_RS11175	0.50	-0.9
2,483,463	+		LRK54_RS11175	0.50	-0.9
2,483,464	-		LRK54_RS11175	0.50	+0.7
2,483,464	-		LRK54_RS11175	0.50	-2.1
2,483,464	-		LRK54_RS11175	0.50	-2.1
2,483,464	-		LRK54_RS11175	0.50	+0.1
2,483,464	-		LRK54_RS11175	0.50	-2.1
2,483,464	-		LRK54_RS11175	0.50	-1.3
2,483,730	+		LRK54_RS11175	0.60	+0.3
2,483,730	+		LRK54_RS11175	0.60	-1.3
2,483,730	+		LRK54_RS11175	0.60	-0.3
2,483,731	-		LRK54_RS11175	0.60	-0.3
2,483,751	+		LRK54_RS11175	0.61	+1.7
2,483,752	-		LRK54_RS11175	0.61	+1.3
2,483,781	+		LRK54_RS11175	0.62	-1.6
2,483,781	+		LRK54_RS11175	0.62	-0.3
2,483,782	-		LRK54_RS11175	0.62	-1.9
2,483,782	-		LRK54_RS11175	0.62	-0.3
2,483,782	-		LRK54_RS11175	0.62	-0.3
2,483,782	-		LRK54_RS11175	0.62	+0.7
2,483,782	-		LRK54_RS11175	0.62	-1.9
2,483,871	+		LRK54_RS11175	0.65	-1.3
2,483,871	+		LRK54_RS11175	0.65	-1.9
2,483,872	-		LRK54_RS11175	0.65	+0.7
2,483,910	+		LRK54_RS11175	0.67	-0.3
2,483,910	+		LRK54_RS11175	0.67	-1.9
2,483,910	+		LRK54_RS11175	0.67	-1.9
2,483,910	+		LRK54_RS11175	0.67	-1.3
2,483,911	-		LRK54_RS11175	0.67	-1.6
2,483,911	-		LRK54_RS11175	0.67	+0.1
2,483,911	-		LRK54_RS11175	0.67	-1.3
2,483,911	-		LRK54_RS11175	0.67	-1.3
2,483,911	-		LRK54_RS11175	0.67	-1.6
2,483,913	+		LRK54_RS11175	0.67	+1.3
2,483,914	-		LRK54_RS11175	0.67	-1.3
2,484,088	-		LRK54_RS11175	0.73	-1.3
2,484,088	-		LRK54_RS11175	0.73	-0.9
2,484,147	+		LRK54_RS11175	0.75	+0.7
2,484,148	-		LRK54_RS11175	0.76	-1.1
2,484,148	-		LRK54_RS11175	0.76	+0.7
2,484,171	+		LRK54_RS11175	0.76	+0.7
2,484,171	+		LRK54_RS11175	0.76	-1.9
2,484,171	+		LRK54_RS11175	0.76	-0.3
2,484,171	+		LRK54_RS11175	0.76	+0.7
2,484,171	+		LRK54_RS11175	0.76	-0.6
2,484,171	+		LRK54_RS11175	0.76	-0.3
2,484,171	+		LRK54_RS11175	0.76	-0.4
2,484,172	-		LRK54_RS11175	0.76	+0.4
2,484,174	+		LRK54_RS11175	0.76	-0.9
2,484,174	+		LRK54_RS11175	0.76	-0.9
2,484,174	+		LRK54_RS11175	0.76	-2.3
2,484,174	+		LRK54_RS11175	0.76	-1.6
2,484,174	+		LRK54_RS11175	0.76	-0.3
2,484,175	-		LRK54_RS11175	0.77	-0.1
2,484,175	-		LRK54_RS11175	0.77	-2.4
2,484,175	-		LRK54_RS11175	0.77	-2.4
2,484,198	+		LRK54_RS11175	0.77	-1.3
2,484,198	+		LRK54_RS11175	0.77	+1.6
2,484,198	+		LRK54_RS11175	0.77	+0.7
2,484,198	+		LRK54_RS11175	0.77	-0.3
2,484,198	+		LRK54_RS11175	0.77	-0.3
2,484,199	-		LRK54_RS11175	0.77	-1.3
2,484,199	-		LRK54_RS11175	0.77	-1.3
2,484,199	-		LRK54_RS11175	0.77	-1.6
2,484,228	+		LRK54_RS11175	0.78	-0.3
2,484,229	-		LRK54_RS11175	0.78	+0.1
2,484,252	+		LRK54_RS11175	0.79	+0.7
2,484,252	+		LRK54_RS11175	0.79	-1.9
2,484,252	+		LRK54_RS11175	0.79	-0.3
2,484,253	-		LRK54_RS11175	0.79	+0.7
2,484,253	-		LRK54_RS11175	0.79	-0.3
2,484,253	-		LRK54_RS11175	0.79	-0.9
2,484,253	-		LRK54_RS11175	0.79	-2.1
2,484,253	-		LRK54_RS11175	0.79	-0.9
2,484,253	-		LRK54_RS11175	0.79	-0.9
2,484,555	+				-0.9
2,484,556	-				-0.9
2,484,556	-				-2.2
2,484,556	-				-0.3
2,484,556	-				-0.3
2,484,772	-				+0.3
2,484,875	+				+0.6
2,484,875	+				-0.7
2,484,876	-				-0.0
2,484,876	-				-0.9
2,484,876	-				-1.4
2,484,876	-				+1.0
2,485,100	+		LRK54_RS11180	0.14	+0.5
2,485,100	+		LRK54_RS11180	0.14	-0.6
2,485,100	+		LRK54_RS11180	0.14	+0.4
2,485,100	+		LRK54_RS11180	0.14	+0.7
2,485,100	+		LRK54_RS11180	0.14	-0.4
2,485,100	+		LRK54_RS11180	0.14	-0.9
2,485,100	+		LRK54_RS11180	0.14	+0.7
2,485,100	+		LRK54_RS11180	0.14	-2.0
2,485,100	+		LRK54_RS11180	0.14	-0.0
2,485,100	+		LRK54_RS11180	0.14	+0.9
2,485,101	-		LRK54_RS11180	0.14	-1.3
2,485,101	-		LRK54_RS11180	0.14	+1.0
2,485,101	-		LRK54_RS11180	0.14	+0.1
2,485,101	-		LRK54_RS11180	0.14	-0.9
2,485,101	-		LRK54_RS11180	0.14	+0.2
2,485,101	-		LRK54_RS11180	0.14	+0.5
2,485,289	+		LRK54_RS11180	0.26	+0.3
2,485,289	+		LRK54_RS11180	0.26	-0.3
2,485,289	+		LRK54_RS11180	0.26	-0.0
2,485,289	+		LRK54_RS11180	0.26	+0.1
2,485,289	+		LRK54_RS11180	0.26	-1.1
2,485,289	+		LRK54_RS11180	0.26	-0.8
2,485,290	-		LRK54_RS11180	0.26	+0.2
2,485,290	-		LRK54_RS11180	0.26	-0.3
2,485,290	-		LRK54_RS11180	0.26	+0.5
2,485,290	-		LRK54_RS11180	0.26	-0.7
2,485,290	-		LRK54_RS11180	0.26	-0.2
2,485,290	-		LRK54_RS11180	0.26	-0.4
2,485,297	+		LRK54_RS11180	0.26	-0.1
2,485,297	+		LRK54_RS11180	0.26	-0.1
2,485,297	+		LRK54_RS11180	0.26	-0.3
2,485,297	+		LRK54_RS11180	0.26	-0.6
2,485,298	-		LRK54_RS11180	0.26	-1.3
2,485,298	-		LRK54_RS11180	0.26	+0.1
2,485,298	-		LRK54_RS11180	0.26	+0.7
2,485,298	-		LRK54_RS11180	0.26	-1.0
2,485,298	-		LRK54_RS11180	0.26	-0.2
2,485,298	-		LRK54_RS11180	0.26	+0.5
2,485,298	-		LRK54_RS11180	0.26	-0.9
2,485,652	+		LRK54_RS11180	0.48	-0.1
2,485,652	+		LRK54_RS11180	0.48	-0.5
2,485,652	+		LRK54_RS11180	0.48	-0.1
2,485,652	+		LRK54_RS11180	0.48	+0.7
2,485,652	+		LRK54_RS11180	0.48	-1.0
2,485,652	+		LRK54_RS11180	0.48	+0.2
2,485,652	+		LRK54_RS11180	0.48	-0.6
2,485,652	+		LRK54_RS11180	0.48	-1.4
2,485,652	+		LRK54_RS11180	0.48	-0.6
2,485,652	+		LRK54_RS11180	0.48	-0.0
2,485,652	+		LRK54_RS11180	0.48	+0.1
2,485,652	+		LRK54_RS11180	0.48	+1.7
2,485,652	+		LRK54_RS11180	0.48	+1.1
2,485,652	+		LRK54_RS11180	0.48	-0.5
2,485,653	-		LRK54_RS11180	0.49	+0.1
2,485,653	-		LRK54_RS11180	0.49	+0.3
2,485,653	-		LRK54_RS11180	0.49	-0.1
2,485,653	-		LRK54_RS11180	0.49	-0.8
2,485,653	-		LRK54_RS11180	0.49	-0.5
2,485,653	-		LRK54_RS11180	0.49	+0.1
2,485,653	-		LRK54_RS11180	0.49	-0.6
2,485,653	-		LRK54_RS11180	0.49	-0.3
2,485,653	-		LRK54_RS11180	0.49	+0.4
2,485,760	+		LRK54_RS11180	0.55	-1.0
2,485,760	+		LRK54_RS11180	0.55	-1.4
2,485,760	+		LRK54_RS11180	0.55	-1.3
2,485,761	-		LRK54_RS11180	0.55	-1.7
2,485,761	-		LRK54_RS11180	0.55	+0.1
2,485,761	-		LRK54_RS11180	0.55	-1.3
2,485,761	-		LRK54_RS11180	0.55	+1.0