Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS10950

Experiment: R2A with SpecU metal mix 1 X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with SpecU metal mix 1 X
2,421,495	+				+0.5
2,421,495	+				+0.3
2,421,495	+				+0.2
2,421,507	+				+0.1
2,421,507	+				-0.9
2,421,518	+				+0.5
2,422,562	+				+0.7
2,422,562	+				-1.7
2,422,562	+				-2.0
2,422,562	+				-1.1
2,422,563	-				+0.7
2,422,563	-				-1.7
2,422,563	-				-0.6
2,422,563	-				-0.3
2,422,772	+		LRK54_RS10950	0.20	+0.1
2,422,772	+		LRK54_RS10950	0.20	-1.1
2,422,772	+		LRK54_RS10950	0.20	+0.0
2,422,772	+		LRK54_RS10950	0.20	-1.3
2,422,772	+		LRK54_RS10950	0.20	+0.7
2,422,772	+		LRK54_RS10950	0.20	+0.5
2,422,772	+		LRK54_RS10950	0.20	+1.0
2,422,772	+		LRK54_RS10950	0.20	-0.9
2,422,772	+		LRK54_RS10950	0.20	-0.9
2,422,772	+		LRK54_RS10950	0.20	-1.9
2,422,772	+		LRK54_RS10950	0.20	-2.1
2,422,772	+		LRK54_RS10950	0.20	+0.7
2,422,772	+		LRK54_RS10950	0.20	+0.4
2,422,772	+		LRK54_RS10950	0.20	-0.4
2,422,773	-		LRK54_RS10950	0.20	-1.6
2,422,773	-		LRK54_RS10950	0.20	-1.1
2,422,773	-		LRK54_RS10950	0.20	+0.7
2,422,773	-		LRK54_RS10950	0.20	-0.9
2,422,773	-		LRK54_RS10950	0.20	-1.9
2,422,773	-		LRK54_RS10950	0.20	-0.9
2,422,773	-		LRK54_RS10950	0.20	-0.9
2,422,773	-		LRK54_RS10950	0.20	-0.3
2,422,773	-		LRK54_RS10950	0.20	-1.9
2,422,773	-		LRK54_RS10950	0.20	-0.9
2,422,773	-		LRK54_RS10950	0.20	-1.9
2,422,773	-		LRK54_RS10950	0.20	-0.3
2,422,773	-		LRK54_RS10950	0.20	+0.7
2,422,773	-		LRK54_RS10950	0.20	-1.9
2,422,775	+		LRK54_RS10950	0.21	+0.1
2,422,775	+		LRK54_RS10950	0.21	+2.3
2,422,775	+		LRK54_RS10950	0.21	-0.7
2,422,775	+		LRK54_RS10950	0.21	-3.6
2,422,775	+		LRK54_RS10950	0.21	+1.3
2,422,775	+		LRK54_RS10950	0.21	-1.5
2,422,776	-		LRK54_RS10950	0.21	+0.1
2,422,776	-		LRK54_RS10950	0.21	+0.7
2,422,776	-		LRK54_RS10950	0.21	-1.6
2,422,776	-		LRK54_RS10950	0.21	+0.1
2,423,204	+		LRK54_RS10950	0.52	-0.3
2,423,204	+		LRK54_RS10950	0.52	-0.3
2,423,204	+		LRK54_RS10950	0.52	+1.3
2,423,204	+		LRK54_RS10950	0.52	+0.7
2,423,204	+		LRK54_RS10950	0.52	+1.3
2,423,204	+		LRK54_RS10950	0.52	-0.9
2,423,205	-		LRK54_RS10950	0.52	-1.6
2,423,205	-		LRK54_RS10950	0.52	-1.3
2,423,205	-		LRK54_RS10950	0.52	-0.7
2,423,205	-		LRK54_RS10950	0.52	-1.6
2,423,205	-		LRK54_RS10950	0.52	-1.0
2,423,205	-		LRK54_RS10950	0.52	-2.8
2,423,205	-		LRK54_RS10950	0.52	-1.7
2,423,205	-		LRK54_RS10950	0.52	-2.6
2,423,205	-		LRK54_RS10950	0.52	-2.1
2,423,205	-		LRK54_RS10950	0.52	-2.8
2,423,205	-		LRK54_RS10950	0.52	-2.3
2,423,205	-		LRK54_RS10950	0.52	-1.5
2,423,205	-		LRK54_RS10950	0.52	-1.2
2,423,210	+		LRK54_RS10950	0.52	+0.7
2,423,510	+		LRK54_RS10950	0.74	+0.4
2,423,510	+		LRK54_RS10950	0.74	-0.3
2,423,510	+		LRK54_RS10950	0.74	+0.1
2,423,510	+		LRK54_RS10950	0.74	+0.7
2,423,510	+		LRK54_RS10950	0.74	-1.6
2,423,510	+		LRK54_RS10950	0.74	-1.1
2,423,511	-		LRK54_RS10950	0.74	-2.1
2,423,511	-		LRK54_RS10950	0.74	+0.7
2,423,511	-		LRK54_RS10950	0.74	-1.6
2,423,511	-		LRK54_RS10950	0.74	+0.3
2,423,561	+		LRK54_RS10950	0.78	-2.6
2,423,561	+		LRK54_RS10950	0.78	-1.3
2,423,561	+		LRK54_RS10950	0.78	-1.0
2,423,561	+		LRK54_RS10950	0.78	-0.6
2,423,561	+		LRK54_RS10950	0.78	-0.7
2,423,561	+		LRK54_RS10950	0.78	-2.4
2,423,562	-		LRK54_RS10950	0.78	-2.3
2,423,562	-		LRK54_RS10950	0.78	-1.4
2,423,562	-		LRK54_RS10950	0.78	-0.3
2,423,562	-		LRK54_RS10950	0.78	-1.7
2,423,562	-		LRK54_RS10950	0.78	-0.3
2,423,642	+		LRK54_RS10950	0.84	-0.9
2,423,642	+		LRK54_RS10950	0.84	-0.9
2,423,642	+		LRK54_RS10950	0.84	-0.5
2,423,642	+		LRK54_RS10950	0.84	+0.7
2,423,642	+		LRK54_RS10950	0.84	+0.3
2,423,642	+		LRK54_RS10950	0.84	+1.7
2,423,642	+		LRK54_RS10950	0.84	-3.4
2,423,642	+		LRK54_RS10950	0.84	-2.3
2,423,642	+		LRK54_RS10950	0.84	-0.9
2,423,642	+		LRK54_RS10950	0.84	+1.3
2,423,642	+		LRK54_RS10950	0.84	-0.6
2,423,642	+		LRK54_RS10950	0.84	-0.9
2,423,642	+		LRK54_RS10950	0.84	-1.9
2,423,642	+		LRK54_RS10950	0.84	-0.9
2,423,642	+		LRK54_RS10950	0.84	+0.1
2,423,642	+		LRK54_RS10950	0.84	-1.6
2,423,642	+		LRK54_RS10950	0.84	-0.3
2,423,642	+		LRK54_RS10950	0.84	-0.3
2,423,642	+		LRK54_RS10950	0.84	-0.7
2,423,642	+		LRK54_RS10950	0.84	+1.5
2,423,642	+		LRK54_RS10950	0.84	-1.3
2,423,642	+		LRK54_RS10950	0.84	-2.4
2,423,642	+		LRK54_RS10950	0.84	-0.3
2,423,642	+		LRK54_RS10950	0.84	-3.2
2,423,642	+		LRK54_RS10950	0.84	-1.0
2,423,643	-		LRK54_RS10950	0.84	-1.3
2,423,643	-		LRK54_RS10950	0.84	-2.1
2,423,643	-		LRK54_RS10950	0.84	-2.1
2,423,643	-		LRK54_RS10950	0.84	-0.9
2,423,643	-		LRK54_RS10950	0.84	+0.1
2,423,643	-		LRK54_RS10950	0.84	-0.3
2,423,643	-		LRK54_RS10950	0.84	-0.9
2,423,643	-		LRK54_RS10950	0.84	-1.0
2,423,643	-		LRK54_RS10950	0.84	-0.7
2,423,643	-		LRK54_RS10950	0.84	-0.3
2,423,643	-		LRK54_RS10950	0.84	-0.3
2,423,643	-		LRK54_RS10950	0.84	-2.6
2,423,643	-		LRK54_RS10950	0.84	-0.0
2,423,643	-		LRK54_RS10950	0.84	-1.6
2,423,643	-		LRK54_RS10950	0.84	-0.3
2,423,643	-		LRK54_RS10950	0.84	+2.1
2,423,643	-		LRK54_RS10950	0.84	-2.6
2,423,643	-		LRK54_RS10950	0.84	-0.1
2,423,643	-		LRK54_RS10950	0.84	+0.1
2,423,643	-		LRK54_RS10950	0.84	-0.3
2,423,643	-		LRK54_RS10950	0.84	-2.2
2,423,643	-		LRK54_RS10950	0.84	-1.7
2,423,643	-		LRK54_RS10950	0.84	-2.7
2,423,643	-		LRK54_RS10950	0.84	+0.1
2,423,643	-		LRK54_RS10950	0.84	+1.5
2,423,643	-		LRK54_RS10950	0.84	-2.1
2,423,643	-		LRK54_RS10950	0.84	-1.9
2,423,643	-		LRK54_RS10950	0.84	-1.1
2,423,643	-		LRK54_RS10950	0.84	-1.9
2,423,643	-		LRK54_RS10950	0.84	-0.3
2,423,643	-		LRK54_RS10950	0.84	+0.5
2,423,643	-		LRK54_RS10950	0.84	-2.3
2,423,643	-		LRK54_RS10950	0.84	-2.7
2,423,643	-		LRK54_RS10950	0.84	+1.7
2,423,643	-		LRK54_RS10950	0.84	-1.3
2,423,643	-		LRK54_RS10950	0.84	-3.3
2,423,643	-		LRK54_RS10950	0.84	-1.3
2,423,643	-		LRK54_RS10950	0.84	-2.1
2,423,643	-		LRK54_RS10950	0.84	-1.3
2,423,663	+		LRK54_RS10950	0.85	+0.1
2,423,664	-		LRK54_RS10950	0.85	-2.4
2,423,664	-		LRK54_RS10950	0.85	+1.7
2,423,664	-		LRK54_RS10950	0.85	-2.7
2,423,664	-		LRK54_RS10950	0.85	-0.9
2,423,877	+				-1.4
2,423,877	+				+0.2
2,423,877	+				-1.3
2,423,877	+				-3.3
2,423,877	+				-1.0
2,423,877	+				-1.6
2,423,878	-				-0.3
2,423,878	-				-0.6
2,423,979	+				-1.9
2,423,979	+				+0.4
2,423,990	+				-1.6
2,423,990	+				+0.7
2,423,990	+				-0.9
2,423,990	+				-0.6
2,423,990	+				+0.7
2,423,990	+				+0.2
2,423,991	-				-0.1
2,423,991	-				+0.7
2,423,991	-				-2.3
2,424,001	+				-0.9
2,424,001	+				+1.1
2,424,001	+				-0.2
2,424,001	+				+0.7
2,424,001	+				-0.3
2,424,001	+				-0.5
2,424,002	-				-0.1
2,424,002	-				+0.8
2,424,002	-				-0.3
2,424,002	-				-0.3
2,424,091	+				-1.5
2,424,091	+				-1.5
2,424,091	+				-0.9
2,424,091	+				-0.8
2,424,091	+				-0.3
2,424,091	+				-1.7
2,424,091	+				-2.4
2,424,091	+				+0.4
2,424,091	+				-1.4
2,424,092	-				+2.2
2,424,092	-				-0.7
2,424,092	-				+0.4
2,424,092	-				+2.1
2,424,101	+				-1.3
2,424,193	+		LRK54_RS10955	0.14	+0.7
2,424,193	+		LRK54_RS10955	0.14	-2.5
2,424,193	+		LRK54_RS10955	0.14	-2.3
2,424,193	+		LRK54_RS10955	0.14	-0.4
2,424,193	+		LRK54_RS10955	0.14	-2.1
2,424,193	+		LRK54_RS10955	0.14	-2.5
2,424,193	+		LRK54_RS10955	0.14	-0.3
2,424,193	+		LRK54_RS10955	0.14	-2.0
2,424,193	+		LRK54_RS10955	0.14	-1.6
2,424,193	+		LRK54_RS10955	0.14	+0.7
2,424,193	+		LRK54_RS10955	0.14	-2.2
2,424,193	+		LRK54_RS10955	0.14	-1.6
2,424,193	+		LRK54_RS10955	0.14	-2.6
2,424,193	+		LRK54_RS10955	0.14	-0.4
2,424,193	+		LRK54_RS10955	0.14	-0.3
2,424,193	+		LRK54_RS10955	0.14	-1.3
2,424,193	+		LRK54_RS10955	0.14	-0.5
2,424,193	+		LRK54_RS10955	0.14	-0.9
2,424,193	+		LRK54_RS10955	0.14	-1.9
2,424,193	+		LRK54_RS10955	0.14	-1.6
2,424,193	+		LRK54_RS10955	0.14	-2.6
2,424,193	+		LRK54_RS10955	0.14	+2.1
2,424,194	-		LRK54_RS10955	0.14	+0.5
2,424,194	-		LRK54_RS10955	0.14	-0.9
2,424,194	-		LRK54_RS10955	0.14	-1.0
2,424,194	-		LRK54_RS10955	0.14	-1.6
2,424,194	-		LRK54_RS10955	0.14	-1.4
2,424,194	-		LRK54_RS10955	0.14	-0.9
2,424,194	-		LRK54_RS10955	0.14	+1.7
2,424,194	-		LRK54_RS10955	0.14	-1.3
2,424,194	-		LRK54_RS10955	0.14	-1.6
2,424,194	-		LRK54_RS10955	0.14	-0.0
2,424,194	-		LRK54_RS10955	0.14	-1.5
2,424,194	-		LRK54_RS10955	0.14	+0.7
2,424,194	-		LRK54_RS10955	0.14	-0.3
2,424,194	-		LRK54_RS10955	0.14	-0.3
2,424,194	-		LRK54_RS10955	0.14	+0.0
2,424,194	-		LRK54_RS10955	0.14	-0.9
2,424,194	-		LRK54_RS10955	0.14	-2.6
2,424,194	-		LRK54_RS10955	0.14	-0.3
2,424,194	-		LRK54_RS10955	0.14	-0.6
2,424,194	-		LRK54_RS10955	0.14	-1.2
2,424,194	-		LRK54_RS10955	0.14	-0.9
2,424,194	-		LRK54_RS10955	0.14	-1.4
2,424,194	-		LRK54_RS10955	0.14	-1.7
2,424,194	-		LRK54_RS10955	0.14	+1.2
2,424,194	-		LRK54_RS10955	0.14	-2.0
2,424,194	-		LRK54_RS10955	0.14	+0.7
2,424,194	-		LRK54_RS10955	0.14	-1.4
2,424,262	+		LRK54_RS10955	0.19	-2.7
2,424,262	+		LRK54_RS10955	0.19	-2.5
2,424,262	+		LRK54_RS10955	0.19	-1.0
2,424,262	+		LRK54_RS10955	0.19	-1.5
2,424,262	+		LRK54_RS10955	0.19	-1.0
2,424,262	+		LRK54_RS10955	0.19	-2.4
2,424,262	+		LRK54_RS10955	0.19	-0.9
2,424,262	+		LRK54_RS10955	0.19	-0.1
2,424,262	+		LRK54_RS10955	0.19	-2.3
2,424,262	+		LRK54_RS10955	0.19	-2.6
2,424,262	+		LRK54_RS10955	0.19	-1.3
2,424,262	+		LRK54_RS10955	0.19	-2.7
2,424,262	+		LRK54_RS10955	0.19	-2.9
2,424,262	+		LRK54_RS10955	0.19	-0.3
2,424,263	-		LRK54_RS10955	0.19	-0.6
2,424,263	-		LRK54_RS10955	0.19	-1.4
2,424,263	-		LRK54_RS10955	0.19	-0.7
2,424,263	-		LRK54_RS10955	0.19	-0.9
2,424,263	-		LRK54_RS10955	0.19	-0.7
2,424,263	-		LRK54_RS10955	0.19	-1.4
2,424,263	-		LRK54_RS10955	0.19	-0.3
2,424,263	-		LRK54_RS10955	0.19	-0.9
2,424,263	-		LRK54_RS10955	0.19	-1.3
2,424,263	-		LRK54_RS10955	0.19	-2.3
2,424,334	+		LRK54_RS10955	0.25	-2.1
2,424,334	+		LRK54_RS10955	0.25	-1.4
2,424,334	+		LRK54_RS10955	0.25	-1.7
2,424,334	+		LRK54_RS10955	0.25	-0.2
2,424,334	+		LRK54_RS10955	0.25	+1.1
2,424,569	-		LRK54_RS10955	0.44	-2.7
2,424,569	-		LRK54_RS10955	0.44	-3.0
2,424,569	-		LRK54_RS10955	0.44	-1.5
2,424,569	-		LRK54_RS10955	0.44	-0.9
2,424,569	-		LRK54_RS10955	0.44	+0.3
2,424,763	+		LRK54_RS10955	0.60	-1.5
2,424,763	+		LRK54_RS10955	0.60	-2.9
2,424,763	+		LRK54_RS10955	0.60	-2.7
2,424,763	+		LRK54_RS10955	0.60	-0.9
2,424,763	+		LRK54_RS10955	0.60	-0.9
2,424,763	+		LRK54_RS10955	0.60	-0.7
2,424,763	+		LRK54_RS10955	0.60	-0.7
2,424,763	+		LRK54_RS10955	0.60	-0.7
2,424,764	-		LRK54_RS10955	0.60	-0.9
2,424,764	-		LRK54_RS10955	0.60	-1.9
2,424,764	-		LRK54_RS10955	0.60	-0.0
2,424,764	-		LRK54_RS10955	0.60	-1.4
2,424,764	-		LRK54_RS10955	0.60	-1.3
2,424,764	-		LRK54_RS10955	0.60	-0.4
2,424,764	-		LRK54_RS10955	0.60	+1.7
2,424,764	-		LRK54_RS10955	0.60	-1.8
2,424,772	+		LRK54_RS10955	0.61	-0.7
2,424,772	+		LRK54_RS10955	0.61	-2.6
2,424,772	+		LRK54_RS10955	0.61	-1.3
2,424,773	-		LRK54_RS10955	0.61	+0.1
2,424,773	-		LRK54_RS10955	0.61	-1.1
2,424,773	-		LRK54_RS10955	0.61	-0.9
2,424,773	-		LRK54_RS10955	0.61	-1.1
2,424,773	-		LRK54_RS10955	0.61	-1.6
2,424,773	-		LRK54_RS10955	0.61	-0.7
2,424,773	-		LRK54_RS10955	0.61	-1.5
2,424,850	+		LRK54_RS10955	0.67	-2.3
2,424,850	+		LRK54_RS10955	0.67	-2.1
2,424,850	+		LRK54_RS10955	0.67	+0.3
2,424,850	+		LRK54_RS10955	0.67	+2.0
2,424,850	+		LRK54_RS10955	0.67	-0.6
2,424,850	+		LRK54_RS10955	0.67	-1.7
2,424,850	+		LRK54_RS10955	0.67	-1.2
2,424,850	+		LRK54_RS10955	0.67	-1.9
2,424,850	+		LRK54_RS10955	0.67	-3.3
2,424,851	-		LRK54_RS10955	0.67	-0.3
2,424,851	-		LRK54_RS10955	0.67	-1.3
2,424,851	-		LRK54_RS10955	0.67	-1.6
2,424,851	-		LRK54_RS10955	0.67	-1.1
2,424,851	-		LRK54_RS10955	0.67	-1.1
2,424,851	-		LRK54_RS10955	0.67	-0.9
2,424,851	-		LRK54_RS10955	0.67	-1.3
2,424,851	-		LRK54_RS10955	0.67	-2.0
2,424,851	-		LRK54_RS10955	0.67	-0.3