Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS09835

Experiment: R2A with SpecU metal mix 1 X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with SpecU metal mix 1 X
2,144,750	+				-0.8
2,144,751	-				-1.6
2,144,751	-				+0.4
2,144,940	+		LRK54_RS09830	0.26	+0.0
2,144,940	+		LRK54_RS09830	0.26	-0.2
2,144,940	+		LRK54_RS09830	0.26	-0.3
2,144,940	+		LRK54_RS09830	0.26	-0.4
2,144,940	+		LRK54_RS09830	0.26	-0.8
2,144,940	+		LRK54_RS09830	0.26	+0.5
2,144,940	+		LRK54_RS09830	0.26	+1.6
2,144,940	+		LRK54_RS09830	0.26	+0.4
2,144,940	+		LRK54_RS09830	0.26	-0.0
2,144,940	+		LRK54_RS09830	0.26	+0.1
2,144,940	+		LRK54_RS09830	0.26	+0.9
2,144,940	+		LRK54_RS09830	0.26	+1.8
2,144,940	+		LRK54_RS09830	0.26	+0.1
2,144,940	+		LRK54_RS09830	0.26	-0.2
2,144,940	+		LRK54_RS09830	0.26	-0.2
2,144,940	+		LRK54_RS09830	0.26	+0.7
2,144,941	-		LRK54_RS09830	0.26	-1.4
2,144,941	-		LRK54_RS09830	0.26	+0.3
2,144,941	-		LRK54_RS09830	0.26	-1.8
2,144,941	-		LRK54_RS09830	0.26	+0.2
2,144,941	-		LRK54_RS09830	0.26	+0.2
2,144,941	-		LRK54_RS09830	0.26	-0.4
2,144,941	-		LRK54_RS09830	0.26	-0.8
2,144,941	-		LRK54_RS09830	0.26	-1.2
2,144,941	-		LRK54_RS09830	0.26	+2.2
2,144,941	-		LRK54_RS09830	0.26	-1.1
2,144,941	-		LRK54_RS09830	0.26	-0.1
2,144,941	-		LRK54_RS09830	0.26	-0.6
2,144,941	-		LRK54_RS09830	0.26	-0.1
2,144,941	-		LRK54_RS09830	0.26	+1.8
2,144,941	-		LRK54_RS09830	0.26	-0.6
2,144,941	-		LRK54_RS09830	0.26	-1.3
2,144,941	-		LRK54_RS09830	0.26	+0.0
2,144,941	-		LRK54_RS09830	0.26	-2.0
2,144,941	-		LRK54_RS09830	0.26	-2.0
2,144,941	-		LRK54_RS09830	0.26	+0.7
2,144,941	-		LRK54_RS09830	0.26	-1.2
2,144,994	+		LRK54_RS09830	0.35	+1.0
2,145,087	+		LRK54_RS09830	0.51	+0.4
2,145,087	+		LRK54_RS09830	0.51	+0.3
2,145,087	+		LRK54_RS09830	0.51	+0.5
2,145,087	+		LRK54_RS09830	0.51	-0.8
2,145,087	+		LRK54_RS09830	0.51	+0.4
2,145,087	+		LRK54_RS09830	0.51	+0.8
2,145,088	-		LRK54_RS09830	0.51	+0.5
2,145,088	-		LRK54_RS09830	0.51	-2.0
2,145,088	-		LRK54_RS09830	0.51	+0.3
2,145,088	-		LRK54_RS09830	0.51	+0.6
2,145,088	-		LRK54_RS09830	0.51	+0.2
2,145,088	-		LRK54_RS09830	0.51	-0.0
2,145,088	-		LRK54_RS09830	0.51	+0.8
2,145,162	+		LRK54_RS09830	0.63	+0.5
2,145,162	+		LRK54_RS09830	0.63	-0.1
2,145,162	+		LRK54_RS09830	0.63	-0.4
2,145,162	+		LRK54_RS09830	0.63	-0.6
2,145,162	+		LRK54_RS09830	0.63	+1.4
2,145,163	-		LRK54_RS09830	0.63	-2.2
2,145,163	-		LRK54_RS09830	0.63	-0.1
2,145,163	-		LRK54_RS09830	0.63	+0.3
2,145,163	-		LRK54_RS09830	0.63	+0.0
2,145,192	+		LRK54_RS09830	0.68	-1.2
2,145,192	+		LRK54_RS09830	0.68	+0.2
2,145,192	+		LRK54_RS09830	0.68	+0.6
2,145,192	+		LRK54_RS09830	0.68	+0.2
2,145,192	+		LRK54_RS09830	0.68	+0.7
2,145,192	+		LRK54_RS09830	0.68	-1.2
2,145,192	+		LRK54_RS09830	0.68	-0.5
2,145,192	+		LRK54_RS09830	0.68	+0.8
2,145,193	-		LRK54_RS09830	0.68	-0.8
2,145,193	-		LRK54_RS09830	0.68	-0.2
2,145,193	-		LRK54_RS09830	0.68	+0.0
2,145,193	-		LRK54_RS09830	0.68	-0.3
2,145,193	-		LRK54_RS09830	0.68	-0.2
2,145,193	-		LRK54_RS09830	0.68	+0.2
2,145,193	-		LRK54_RS09830	0.68	-0.2
2,145,193	-		LRK54_RS09830	0.68	-0.3
2,145,193	-		LRK54_RS09830	0.68	+0.4
2,145,193	-		LRK54_RS09830	0.68	+1.0
2,145,281	-		LRK54_RS09830	0.83	+0.1
2,145,575	+				+0.0
2,145,575	+				+2.4
2,145,575	+				-0.3
2,145,575	+				+0.7
2,145,575	+				-1.2
2,145,575	+				+0.2
2,145,575	+				+0.2
2,145,575	+				+0.1
2,145,575	+				+0.0
2,145,575	+				-0.8
2,145,575	+				-1.6
2,145,575	+				-0.6
2,145,575	+				+0.6
2,145,575	+				-1.1
2,145,576	-				+1.0
2,145,576	-				-0.3
2,145,576	-				+0.2
2,145,576	-				+1.2
2,145,576	-				+0.8
2,145,576	-				-0.4
2,145,576	-				+0.6
2,145,576	-				+0.8
2,145,576	-				-0.2
2,145,576	-				-0.3
2,145,576	-				+0.6
2,145,576	-				-0.7
2,145,576	-				+0.1
2,145,576	-				+0.0
2,145,576	-				-1.6
2,145,576	-				-0.4
2,145,576	-				+1.6
2,145,576	-				+0.4
2,145,576	-				+2.0
2,145,576	-				+0.3
2,145,680	+		LRK54_RS09835	0.20	-0.5
2,145,680	+		LRK54_RS09835	0.20	-1.5
2,145,680	+		LRK54_RS09835	0.20	-0.9
2,145,680	+		LRK54_RS09835	0.20	-0.9
2,145,681	-		LRK54_RS09835	0.20	-0.8
2,145,681	-		LRK54_RS09835	0.20	-1.0
2,145,681	-		LRK54_RS09835	0.20	-0.3
2,145,809	+		LRK54_RS09835	0.45	-1.7
2,145,809	+		LRK54_RS09835	0.45	-2.2
2,145,809	+		LRK54_RS09835	0.45	-0.2
2,145,809	+		LRK54_RS09835	0.45	-1.2
2,145,809	+		LRK54_RS09835	0.45	-2.1
2,145,809	+		LRK54_RS09835	0.45	-1.7
2,145,809	+		LRK54_RS09835	0.45	-2.0
2,145,809	+		LRK54_RS09835	0.45	-0.7
2,145,809	+		LRK54_RS09835	0.45	-3.2
2,145,809	+		LRK54_RS09835	0.45	-2.3
2,145,809	+		LRK54_RS09835	0.45	+0.6
2,145,809	+		LRK54_RS09835	0.45	-1.5
2,145,809	+		LRK54_RS09835	0.45	-2.0
2,145,810	-		LRK54_RS09835	0.45	-0.4
2,145,810	-		LRK54_RS09835	0.45	-1.1
2,145,810	-		LRK54_RS09835	0.45	-1.9
2,145,810	-		LRK54_RS09835	0.45	-0.8
2,145,810	-		LRK54_RS09835	0.45	-3.1
2,145,810	-		LRK54_RS09835	0.45	-0.7
2,145,810	-		LRK54_RS09835	0.45	-0.1
2,145,810	-		LRK54_RS09835	0.45	-2.8
2,145,810	-		LRK54_RS09835	0.45	-0.8
2,145,810	-		LRK54_RS09835	0.45	-0.9
2,145,810	-				+0.8
2,145,810	-		LRK54_RS09835	0.45	-1.6
2,145,810	-		LRK54_RS09835	0.45	-1.6
2,145,810	-		LRK54_RS09835	0.45	-1.2
2,145,810	-		LRK54_RS09835	0.45	-0.5
2,145,810	-		LRK54_RS09835	0.45	-3.2
2,145,810	-		LRK54_RS09835	0.45	+2.4
2,145,810	-		LRK54_RS09835	0.45	-1.8
2,145,917	+		LRK54_RS09835	0.66	-1.9
2,145,917	+		LRK54_RS09835	0.66	-1.0
2,145,918	-		LRK54_RS09835	0.66	-1.2
2,145,918	-		LRK54_RS09835	0.66	-1.0
2,145,918	-		LRK54_RS09835	0.66	-1.0
2,145,918	-		LRK54_RS09835	0.66	-0.6
2,145,918	-		LRK54_RS09835	0.66	-2.5
2,146,113	+				-2.6
2,146,113	+				-3.1
2,146,113	+				-0.8
2,146,113	+				-2.1
2,146,113	+				-0.1
2,146,113	+				-0.2
2,146,113	+				+1.1
2,146,113	+				-0.6
2,146,113	+				-2.0
2,146,113	+				-3.0
2,146,113	+				+0.8
2,146,113	+				-2.0
2,146,113	+				-2.5
2,146,113	+				-1.2
2,146,113	+				-1.2
2,146,113	+				-0.9
2,146,113	+				+0.1
2,146,113	+				-2.5
2,146,113	+				-1.8
2,146,113	+				-1.9
2,146,113	+				+0.5
2,146,113	+				+0.8
2,146,113	+				+0.8
2,146,113	+				+0.1
2,146,113	+				-2.0
2,146,113	+				-2.3
2,146,113	+				-1.8
2,146,113	+				-1.4
2,146,113	+				-0.8
2,146,113	+				-3.0
2,146,113	+				-2.0
2,146,113	+				+0.8
2,146,113	+				-0.1
2,146,113	+				-2.3
2,146,113	+				-1.8
2,146,113	+				-0.8
2,146,113	+				-2.3
2,146,114	-				-1.6
2,146,114	-				-1.1
2,146,114	-				-1.9
2,146,114	-				-1.4
2,146,114	-				-0.6
2,146,114	-				+0.1
2,146,114	-				-0.3
2,146,114	-				-1.9
2,146,114	-				-1.2
2,146,114	-				-1.2
2,146,114	-				-0.3
2,146,114	-				-2.2
2,146,114	-				-1.8
2,146,114	-				-1.0
2,146,114	-				-0.8
2,146,114	-				-0.9
2,146,114	-				-1.7
2,146,114	-				-0.2
2,146,114	-				-0.2
2,146,114	-				-2.3
2,146,114	-				-1.3
2,146,114	-				-1.1
2,146,114	-				-1.9
2,146,114	-				-0.9
2,146,114	-				-0.5
2,146,114	-				-0.7
2,146,114	-				+0.4
2,146,114	-				-0.2
2,146,114	-				-0.9
2,146,114	-				-1.3
2,146,114	-				-0.9
2,146,114	-				-0.6
2,146,114	-				-1.5
2,146,114	-				-1.3
2,146,114	-				-1.4
2,146,114	-				+0.1
2,146,114	-				+1.8
2,146,114	-				-1.5
2,146,114	-				-2.2
2,146,114	-				-1.2
2,146,114	-				-1.0
2,146,114	-				-1.7
2,146,114	-				+0.4
2,146,114	-				-1.4
2,146,114	-				-1.2
2,146,164	+				-1.2
2,146,164	+				-2.1
2,146,164	+				-1.1
2,146,164	+				-1.5
2,146,164	+				-1.0
2,146,164	+				-2.5
2,146,165	-				-2.8
2,146,165	-				-2.2
2,146,165	-				-0.8
2,146,165	-				+0.2
2,146,165	-				-0.5
2,146,165	-				-1.6
2,146,165	-				-1.5
2,146,165	-				+1.0
2,146,165	-				-1.1
2,146,292	+				-1.1
2,146,292	+				-2.0
2,146,292	+				-0.9
2,146,292	+				-0.5
2,146,293	-				-0.4
2,146,293	-				-0.3
2,146,293	-				+0.1
2,146,293	-				+0.5
2,146,293	-				-0.1
2,146,294	+				-1.3
2,146,294	+				+0.0
2,146,294	+				+0.5
2,146,294	+				+0.8
2,146,294	+				+0.8
2,146,294	+				-2.6
2,146,294	+				-1.5
2,146,294	+				-0.4
2,146,294	+				-0.8
2,146,294	+				+1.2
2,146,295	-				+1.8
2,146,295	-				-0.6
2,146,295	-				-1.2
2,146,295	-				-1.1
2,146,295	-				+0.5
2,146,295	-				-0.8
2,146,467	+				-0.3
2,146,467	+				-0.2
2,146,467	+				-0.2
2,146,467	+				+1.4
2,146,467	+				-1.3
2,146,467	+				-0.8
2,146,467	+				+0.1
2,146,467	+				+0.5
2,146,468	-				-2.3
2,146,468	-				+0.6
2,146,468	-				-0.2
2,146,468	-				+0.0
2,146,468	-				-2.0
2,146,468	-				+0.6
2,146,468	-				+0.2
2,146,468	-				-0.4
2,146,468	-				+0.6
2,146,468	-				+1.4
2,146,468	-				+1.2
2,146,468	-				-0.8
2,146,468	-				-0.3
2,146,468	-				-0.3
2,146,468	-				-0.1
2,146,468	-				+0.8
2,146,478	+				+0.3
2,146,478	+				-1.9
2,146,478	+				+1.4
2,146,478	+				-1.1
2,146,478	+				-0.3
2,146,479	-				-0.7
2,146,488	+				-0.2
2,146,488	+				+0.0
2,146,488	+				+0.2
2,146,488	+				+0.1
2,146,488	+				-2.8
2,146,488	+				-0.6
2,146,488	+				-1.8
2,146,488	+				-1.5
2,146,488	+				+2.4
2,146,488	+				-1.2
2,146,488	+				-1.0
2,146,488	+				+0.3
2,146,488	+				-0.2
2,146,488	+				+0.2
2,146,488	+				-1.5
2,146,488	+				+0.5
2,146,488	+				+0.1
2,146,488	+				-1.8
2,146,488	+				+0.2
2,146,488	+				+0.3
2,146,488	+				-0.4
2,146,488	+				+0.6
2,146,488	+				+0.3
2,146,488	+				+0.7
2,146,488	+				-1.3
2,146,488	+				+1.8
2,146,488	+				+0.5
2,146,489	-				-1.0
2,146,489	-				-0.9
2,146,489	-				+0.5
2,146,489	-				+2.1
2,146,489	-				-1.0
2,146,489	-				-0.9
2,146,489	-				-1.2
2,146,489	-				-2.9
2,146,489	-				-0.3
2,146,489	-				+0.3
2,146,489	-				+1.8
2,146,489	-				+0.8
2,146,489	-				+1.4
2,146,489	-				-0.0
2,146,489	-				+0.8
2,146,489	-				-0.1
2,146,489	-				-1.9
2,146,489	-				+0.8
2,146,489	-				-2.3
2,146,489	-				-0.2
2,146,489	-				-1.9
2,146,489	-				-0.5
2,146,489	-				-1.3
2,146,583	+				-0.2
2,146,583	+				-0.8
2,146,583	+				-1.3
2,146,583	+				-0.5
2,146,583	+				-0.7
2,146,583	+				+1.6
2,146,583	+				+0.0
2,146,583	+				+0.1
2,146,583	+				-0.8
2,146,583	+				+0.1
2,146,583	+				+0.5
2,146,583	+				-0.9
2,146,583	+				-0.9
2,146,583	+				-0.2
2,146,583	+				+0.8
2,146,583	+				-0.8
2,146,583	+				+0.5
2,146,583	+				-0.2
2,146,583	+				+0.7
2,146,583	+				+1.5
2,146,583	+				-1.1
2,146,583	+				+1.2
2,146,583	+				-0.1
2,146,583	+				+0.4
2,146,583	+				+0.8
2,146,583	+				-0.4
2,146,583	+				+0.1
2,146,583	+				-0.2
2,146,583	+				+0.8
2,146,583	+				-1.4
2,146,583	+				-1.2
2,146,583	+				+0.4
2,146,583	+				-0.5
2,146,583	+				-0.5
2,146,584	-				-0.8
2,146,584	-				-1.1
2,146,584	-				-0.2
2,146,584	-				+1.4
2,146,584	-				+1.8
2,146,584	-				+0.2
2,146,584	-				-0.8
2,146,584	-				-1.8
2,146,584	-				-1.9
2,146,584	-				-1.2
2,146,584	-				-0.2
2,146,584	-				+3.1
2,146,584	-				-0.2
2,146,584	-				-1.0
2,146,584	-				-0.6
2,146,584	-				-0.8
2,146,584	-				+0.3
2,146,584	-				-1.3
2,146,584	-				+0.4
2,146,584	-				+0.8
2,146,584	-				+1.0
2,146,584	-				-2.6
2,146,584	-				-0.2
2,146,584	-				-1.8
2,146,584	-				+0.8
2,146,584	-				-1.5
2,146,584	-				+0.6
2,146,584	-				-0.4
2,146,584	-				-1.1
2,146,584	-				+0.5
2,146,584	-				-0.7
2,146,584	-				-0.9
2,146,584	-				-2.5
2,146,584	-				-0.2
2,146,584	-				-0.8
2,146,584	-				-0.1
2,146,584	-				-1.4
2,146,584	-				-1.8
2,146,584	-				-0.6
2,146,584	-				-0.2
2,146,584	-				+0.8
2,146,584	-				+0.7
2,146,784	+		LRK54_RS09840	0.16	-3.1
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2,146,784	+		LRK54_RS09840	0.16	-2.0
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2,146,784	+		LRK54_RS09840	0.16	-1.6
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2,146,785	-		LRK54_RS09840	0.16	-0.3
2,146,785	-		LRK54_RS09840	0.16	-1.4
2,146,785	-		LRK54_RS09840	0.16	-1.0
2,146,928	+		LRK54_RS09840	0.28	-0.0
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2,146,928	+		LRK54_RS09840	0.28	-0.4
2,146,928	+		LRK54_RS09840	0.28	+0.2
2,146,928	+		LRK54_RS09840	0.28	-0.8
2,146,928	+		LRK54_RS09840	0.28	+0.6
2,146,928	+		LRK54_RS09840	0.28	-2.2
2,146,928	+		LRK54_RS09840	0.28	-0.8
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2,146,928	+		LRK54_RS09840	0.28	+1.8
2,146,928	+		LRK54_RS09840	0.28	-2.3
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2,146,928	+		LRK54_RS09840	0.28	-1.2
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2,146,941	-		LRK54_RS09840	0.29	-0.4
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2,147,036	+		LRK54_RS09840	0.36	-1.3
2,147,036	+		LRK54_RS09840	0.36	+0.2
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2,147,036	+		LRK54_RS09840	0.36	-2.3
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2,147,037	-		LRK54_RS09840	0.36	-0.3
2,147,037	-		LRK54_RS09840	0.36	+0.8
2,147,084	+		LRK54_RS09840	0.40	-1.3
2,147,084	+		LRK54_RS09840	0.40	-0.5
2,147,084	+		LRK54_RS09840	0.40	-0.7
2,147,084	+		LRK54_RS09840	0.40	-0.0
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2,147,085	-		LRK54_RS09840	0.40	+0.3
2,147,085	-		LRK54_RS09840	0.40	-0.2
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2,147,085	-		LRK54_RS09840	0.40	-1.0
2,147,085	-		LRK54_RS09840	0.40	-0.2
2,147,085	-		LRK54_RS09840	0.40	-1.3