Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS09155

Experiment: R2A with SpecU metal mix 1 X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with SpecU metal mix 1 X
2,004,315	+		LRK54_RS09145	0.87	+0.5
2,004,315	+		LRK54_RS09145	0.87	-0.2
2,004,316	-		LRK54_RS09145	0.87	-0.5
2,004,346	+				-2.5
2,004,346	+				-0.2
2,004,346	+				-0.7
2,004,346	+				-0.6
2,004,346	+				-0.7
2,004,346	+				+0.5
2,004,346	+				+0.2
2,004,346	+				-0.3
2,004,346	+				-0.1
2,004,346	+				-0.1
2,004,347	-				-0.2
2,004,347	-				+0.1
2,004,347	-				-0.1
2,004,347	-				+0.1
2,004,347	-				+0.1
2,004,347	-				-0.2
2,004,347	-				-0.3
2,004,347	-				+2.2
2,004,418	+				+0.9
2,004,418	+				+0.2
2,004,418	+				-0.0
2,004,418	+				-1.6
2,004,418	+				+1.0
2,004,418	+				-2.1
2,004,418	+				+0.9
2,004,418	+				+1.2
2,004,418	+				+0.0
2,004,418	+				-0.6
2,004,418	+				+2.4
2,004,418	+				-1.0
2,004,418	+				+0.4
2,004,418	+				-0.1
2,004,418	+				+0.1
2,004,418	+				+0.2
2,004,418	+				-0.0
2,004,419	-				+0.9
2,004,419	-				+0.6
2,004,419	-				-0.4
2,004,419	-				-0.7
2,004,419	-				+0.0
2,004,419	-				-0.3
2,004,419	-				-0.8
2,004,419	-				-2.5
2,004,419	-				-1.1
2,004,419	-				-2.1
2,004,419	-				+0.1
2,004,419	-				-0.4
2,004,419	-				+0.9
2,004,419	-				+0.4
2,004,419	-				+0.7
2,004,419	-				+0.5
2,004,435	+				-0.1
2,004,435	+				-0.1
2,004,435	+				-1.1
2,004,435	+				+0.1
2,004,435	+				+2.9
2,004,435	+				+0.1
2,004,435	+				-0.1
2,004,435	+				+0.4
2,004,435	+				+0.2
2,004,435	+				-1.1
2,004,436	-				-1.8
2,004,436	-				-0.1
2,004,436	-				+1.4
2,004,436	-				-0.6
2,004,436	-				-0.6
2,004,436	-				-0.2
2,004,436	-				-1.5
2,004,436	-				-1.2
2,004,436	-				+0.4
2,004,436	-				-2.3
2,004,579	+		LRK54_RS09150	0.19	-2.7
2,004,579	+		LRK54_RS09150	0.19	-0.1
2,004,579	+		LRK54_RS09150	0.19	+0.0
2,004,579	+		LRK54_RS09150	0.19	-0.5
2,004,579	+		LRK54_RS09150	0.19	-1.3
2,004,579	+		LRK54_RS09150	0.19	-0.4
2,004,579	+		LRK54_RS09150	0.19	-0.7
2,004,579	+		LRK54_RS09150	0.19	-0.9
2,004,579	+		LRK54_RS09150	0.19	+0.4
2,004,579	+		LRK54_RS09150	0.19	+0.3
2,004,579	+		LRK54_RS09150	0.19	-0.4
2,004,580	-		LRK54_RS09150	0.19	+2.7
2,004,580	-		LRK54_RS09150	0.19	-0.2
2,004,580	-		LRK54_RS09150	0.19	-0.1
2,004,580	-		LRK54_RS09150	0.19	+0.2
2,004,580	-		LRK54_RS09150	0.19	+2.1
2,004,580	-		LRK54_RS09150	0.19	-0.7
2,004,580	-		LRK54_RS09150	0.19	-0.7
2,004,580	-		LRK54_RS09150	0.19	+0.9
2,004,736	+		LRK54_RS09150	0.40	+0.1
2,004,738	+		LRK54_RS09150	0.40	+1.9
2,004,738	+		LRK54_RS09150	0.40	+0.0
2,004,738	+		LRK54_RS09150	0.40	+0.1
2,004,738	+		LRK54_RS09150	0.40	+2.9
2,004,738	+		LRK54_RS09150	0.40	-0.3
2,004,738	+		LRK54_RS09150	0.40	+0.6
2,004,738	+		LRK54_RS09150	0.40	-0.1
2,004,739	-		LRK54_RS09150	0.41	+1.4
2,004,739	-		LRK54_RS09150	0.41	-0.7
2,004,739	-		LRK54_RS09150	0.41	+0.7
2,004,739	-		LRK54_RS09150	0.41	+1.3
2,004,756	+		LRK54_RS09150	0.43	-1.0
2,004,757	-		LRK54_RS09150	0.43	+0.9
2,004,762	+		LRK54_RS09150	0.44	-1.7
2,004,762	+		LRK54_RS09150	0.44	+0.5
2,004,762	+		LRK54_RS09150	0.44	-0.2
2,004,762	+		LRK54_RS09150	0.44	-0.1
2,004,762	+		LRK54_RS09150	0.44	-0.4
2,004,762	+		LRK54_RS09150	0.44	-0.1
2,004,762	+		LRK54_RS09150	0.44	+0.3
2,004,762	+		LRK54_RS09150	0.44	-0.7
2,004,762	+		LRK54_RS09150	0.44	+1.0
2,004,762	+		LRK54_RS09150	0.44	+0.0
2,004,762	+		LRK54_RS09150	0.44	+1.0
2,004,762	+		LRK54_RS09150	0.44	+1.0
2,004,762	+		LRK54_RS09150	0.44	-0.1
2,004,762	+		LRK54_RS09150	0.44	+0.3
2,004,762	+		LRK54_RS09150	0.44	+1.9
2,004,762	+		LRK54_RS09150	0.44	-0.0
2,004,762	+		LRK54_RS09150	0.44	-0.3
2,004,762	+		LRK54_RS09150	0.44	+0.9
2,004,762	+		LRK54_RS09150	0.44	+1.2
2,004,762	+		LRK54_RS09150	0.44	-0.2
2,004,762	+		LRK54_RS09150	0.44	-0.1
2,004,762	+		LRK54_RS09150	0.44	-0.1
2,004,762	+		LRK54_RS09150	0.44	+0.2
2,004,762	+		LRK54_RS09150	0.44	+0.5
2,004,762	+		LRK54_RS09150	0.44	+1.3
2,004,762	+		LRK54_RS09150	0.44	-0.1
2,004,762	+		LRK54_RS09150	0.44	+0.1
2,004,763	-		LRK54_RS09150	0.44	-0.3
2,004,763	-		LRK54_RS09150	0.44	-0.3
2,004,763	-		LRK54_RS09150	0.44	+0.9
2,004,763	-		LRK54_RS09150	0.44	-0.7
2,004,763	-		LRK54_RS09150	0.44	-0.6
2,004,763	-		LRK54_RS09150	0.44	+0.0
2,004,763	-		LRK54_RS09150	0.44	-0.1
2,004,763	-		LRK54_RS09150	0.44	+1.9
2,004,763	-		LRK54_RS09150	0.44	-0.7
2,004,763	-		LRK54_RS09150	0.44	-0.6
2,004,763	-		LRK54_RS09150	0.44	+1.7
2,004,763	-		LRK54_RS09150	0.44	-1.1
2,004,763	-		LRK54_RS09150	0.44	+0.3
2,004,763	-		LRK54_RS09150	0.44	+0.4
2,004,763	-		LRK54_RS09150	0.44	-1.1
2,004,763	-		LRK54_RS09150	0.44	+2.1
2,004,763	-		LRK54_RS09150	0.44	+1.4
2,004,763	-		LRK54_RS09150	0.44	-0.7
2,004,763	-		LRK54_RS09150	0.44	+0.4
2,004,763	-		LRK54_RS09150	0.44	-0.2
2,004,763	-		LRK54_RS09150	0.44	+0.6
2,004,763	-		LRK54_RS09150	0.44	-0.0
2,004,763	-		LRK54_RS09150	0.44	-0.7
2,004,763	-		LRK54_RS09150	0.44	-0.1
2,004,763	-		LRK54_RS09150	0.44	-0.6
2,004,763	-		LRK54_RS09150	0.44	-0.6
2,005,233	+				-0.2
2,005,234	-				+0.1
2,005,342	-		LRK54_RS09155	0.16	-1.7
2,005,342	-		LRK54_RS09155	0.16	-2.3
2,005,342	-		LRK54_RS09155	0.16	-1.7
2,005,342	-		LRK54_RS09155	0.16	-0.1
2,005,342	-		LRK54_RS09155	0.16	-1.3
2,005,342	-		LRK54_RS09155	0.16	-1.1
2,005,342	-		LRK54_RS09155	0.16	-1.1
2,005,458	+		LRK54_RS09155	0.32	-1.5
2,005,459	-		LRK54_RS09155	0.32	-2.8
2,005,459	-		LRK54_RS09155	0.32	-0.5
2,005,459	-		LRK54_RS09155	0.32	-2.2
2,005,459	-		LRK54_RS09155	0.32	-1.7
2,005,459	-		LRK54_RS09155	0.32	-4.9
2,005,459	-		LRK54_RS09155	0.32	-1.7
2,005,459	-		LRK54_RS09155	0.32	-1.1
2,005,938	-				-0.8
2,005,938	-				-0.1
2,005,938	-				-1.5
2,005,938	-				-1.3
2,005,938	-				-0.7
2,005,938	-				-0.3
2,005,938	-				-3.1
2,005,938	-				-2.9
2,005,938	-				-2.7
2,005,938	-				-1.1
2,005,938	-				+0.4
2,005,938	-				-0.7
2,005,938	-				-3.1
2,005,938	-				-0.1
2,005,938	-				-1.7
2,005,938	-				-2.9
2,005,938	-				-0.1
2,005,938	-				-2.7
2,005,938	-				-0.5
2,005,938	-				-1.9
2,005,938	-				-1.5
2,005,938	-				-1.5
2,005,938	-				-1.9
2,005,938	-				-1.5
2,005,938	-				-0.6
2,005,938	-				-1.9
2,005,938	-				-1.9
2,005,938	-				-0.1
2,005,938	-				-2.2
2,005,938	-				-2.4
2,005,938	-				-3.3
2,005,938	-				-0.6
2,005,938	-				-3.0
2,005,938	-				-0.7