Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS08750

Experiment: R2A with SpecU metal mix 1 X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with SpecU metal mix 1 X
1,904,371	+		LRK54_RS08745	0.69	+0.9
1,904,371	+		LRK54_RS08745	0.69	+0.2
1,904,371	+		LRK54_RS08745	0.69	+1.2
1,904,371	+		LRK54_RS08745	0.69	+0.1
1,904,371	+		LRK54_RS08745	0.69	-1.4
1,904,371	+		LRK54_RS08745	0.69	+0.1
1,904,372	-		LRK54_RS08745	0.69	-1.9
1,904,372	-		LRK54_RS08745	0.69	-0.7
1,904,372	-		LRK54_RS08745	0.69	-0.3
1,904,449	+		LRK54_RS08745	0.73	-1.0
1,904,449	+		LRK54_RS08745	0.73	-0.0
1,904,449	+		LRK54_RS08745	0.73	-1.1
1,904,450	-		LRK54_RS08745	0.73	-0.1
1,904,450	-		LRK54_RS08745	0.73	+0.6
1,904,450	-		LRK54_RS08745	0.73	+0.9
1,904,584	+		LRK54_RS08745	0.80	-0.2
1,904,584	+		LRK54_RS08745	0.80	-0.1
1,904,584	+		LRK54_RS08745	0.80	+0.4
1,904,584	+		LRK54_RS08745	0.80	-0.1
1,904,584	+		LRK54_RS08745	0.80	+0.9
1,904,584	+		LRK54_RS08745	0.80	+0.0
1,904,584	+		LRK54_RS08745	0.80	-1.0
1,904,585	-		LRK54_RS08745	0.80	-0.8
1,904,686	+		LRK54_RS08745	0.85	+0.4
1,904,687	-		LRK54_RS08745	0.85	+0.3
1,904,779	+		LRK54_RS08745	0.89	-0.1
1,904,779	+		LRK54_RS08745	0.89	-0.6
1,904,779	+		LRK54_RS08745	0.89	+0.3
1,904,779	+		LRK54_RS08745	0.89	-0.7
1,904,779	+		LRK54_RS08745	0.89	+0.9
1,904,779	+		LRK54_RS08745	0.89	+0.3
1,904,779	+		LRK54_RS08745	0.89	+0.1
1,904,780	-		LRK54_RS08745	0.89	-0.6
1,904,780	-		LRK54_RS08745	0.89	-0.3
1,904,780	-		LRK54_RS08745	0.89	-2.7
1,904,780	-		LRK54_RS08745	0.89	-0.4
1,904,780	-		LRK54_RS08745	0.89	+0.0
1,904,780	-		LRK54_RS08745	0.89	+0.3
1,904,780	-		LRK54_RS08745	0.89	+1.4
1,904,780	-		LRK54_RS08745	0.89	+1.0
1,904,881	+				+0.9
1,904,881	+				+0.0
1,904,881	+				+0.6
1,904,881	+				-0.7
1,904,882	-				+0.9
1,904,882	-				-0.2
1,904,882	-				-0.4
1,905,005	+				-1.3
1,905,005	+				+1.1
1,905,005	+				-1.6
1,905,005	+				+0.9
1,905,005	+				+1.4
1,905,006	-				-0.9
1,905,006	-				+0.1
1,905,028	+				-0.4
1,905,029	-				+0.7
1,905,110	+				-1.6
1,905,110	+				+0.6
1,905,110	+				-1.1
1,905,111	-				-1.9
1,905,111	-				-0.2
1,905,111	-				+0.4
1,905,111	-				+0.9
1,905,111	-				+2.4
1,905,111	-				+3.4
1,905,111	-				+0.3
1,905,111	-				+0.4
1,905,111	-				-1.2
1,905,207	+				-0.1
1,905,208	-				+1.9
1,905,216	+				+0.9
1,905,216	+				-0.7
1,905,216	+				-1.5
1,905,216	+				-0.7
1,905,217	-				-2.3
1,905,217	-				-0.1
1,905,217	-				-0.9
1,905,217	-				-0.1
1,905,217	-				+1.9
1,905,462	+		LRK54_RS08750	0.20	+0.9
1,905,462	+		LRK54_RS08750	0.20	+1.9
1,905,463	-		LRK54_RS08750	0.21	-0.7
1,905,768	+		LRK54_RS08750	0.39	-0.4
1,905,768	+		LRK54_RS08750	0.39	-0.7
1,905,769	-		LRK54_RS08750	0.39	+3.2
1,905,769	-		LRK54_RS08750	0.39	-0.7
1,905,769	-		LRK54_RS08750	0.39	+1.9
1,905,789	+		LRK54_RS08750	0.40	-1.3
1,905,789	+		LRK54_RS08750	0.40	-0.1
1,905,873	+		LRK54_RS08750	0.45	-0.1
1,905,873	+		LRK54_RS08750	0.45	-1.7
1,905,873	+		LRK54_RS08750	0.45	-0.7
1,905,874	-		LRK54_RS08750	0.45	-0.7
1,905,909	+		LRK54_RS08750	0.48	-0.1
1,906,011	+		LRK54_RS08750	0.54	-1.5
1,906,011	+		LRK54_RS08750	0.54	+0.4
1,906,012	-		LRK54_RS08750	0.54	-0.1
1,906,012	-		LRK54_RS08750	0.54	-1.1
1,906,035	+		LRK54_RS08750	0.55	-2.5
1,906,035	+		LRK54_RS08750	0.55	-0.7
1,906,036	-		LRK54_RS08750	0.55	-2.1
1,906,072	+		LRK54_RS08750	0.57	-1.5
1,906,072	+		LRK54_RS08750	0.57	-1.1
1,906,073	-		LRK54_RS08750	0.58	-1.5
1,906,073	-		LRK54_RS08750	0.58	+0.3
1,906,132	-		LRK54_RS08750	0.61	-1.5
1,906,132	-		LRK54_RS08750	0.61	+0.3
1,906,132	-		LRK54_RS08750	0.61	-1.5
1,906,144	-		LRK54_RS08750	0.62	-1.1
1,906,293	+		LRK54_RS08750	0.71	-0.7
1,906,293	+		LRK54_RS08750	0.71	+0.9
1,906,294	-		LRK54_RS08750	0.71	-0.7
1,906,294	-		LRK54_RS08750	0.71	-1.5
1,906,554	+		LRK54_RS08750	0.87	-0.1
1,906,555	-		LRK54_RS08750	0.87	-1.5
1,906,690	-				-0.1
1,907,440	-		LRK54_RS08755	0.31	-0.7
1,907,440	-		LRK54_RS08755	0.31	-1.5