Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS08670

Experiment: R2A with SpecU metal mix 1 X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with SpecU metal mix 1 X
1,887,877	+		LRK54_RS08665	0.72	+2.1
1,887,877	+		LRK54_RS08665	0.72	-0.5
1,887,877	+		LRK54_RS08665	0.72	+0.4
1,887,877	+		LRK54_RS08665	0.72	-1.5
1,887,877	+		LRK54_RS08665	0.72	-0.1
1,887,877	+		LRK54_RS08665	0.72	-1.5
1,887,877	+		LRK54_RS08665	0.72	-0.3
1,887,877	+		LRK54_RS08665	0.72	+0.3
1,887,877	+		LRK54_RS08665	0.72	-1.4
1,887,877	+		LRK54_RS08665	0.72	-0.1
1,887,877	+		LRK54_RS08665	0.72	+0.3
1,887,877	+		LRK54_RS08665	0.72	-0.1
1,887,877	+		LRK54_RS08665	0.72	+0.5
1,887,877	+		LRK54_RS08665	0.72	-0.1
1,887,878	-		LRK54_RS08665	0.72	-0.1
1,887,878	-		LRK54_RS08665	0.72	+1.9
1,887,878	-		LRK54_RS08665	0.72	+0.2
1,887,878	-		LRK54_RS08665	0.72	-2.6
1,887,878	-		LRK54_RS08665	0.72	+0.3
1,887,878	-		LRK54_RS08665	0.72	+0.9
1,887,878	-		LRK54_RS08665	0.72	+0.1
1,887,878	-		LRK54_RS08665	0.72	-0.5
1,887,878	-		LRK54_RS08665	0.72	-0.1
1,887,878	-		LRK54_RS08665	0.72	+0.9
1,887,880	+		LRK54_RS08665	0.72	-0.9
1,887,880	+		LRK54_RS08665	0.72	-0.7
1,887,880	+		LRK54_RS08665	0.72	+0.1
1,887,880	+		LRK54_RS08665	0.72	-0.7
1,887,880	+		LRK54_RS08665	0.72	-0.1
1,887,880	+		LRK54_RS08665	0.72	-0.7
1,887,880	+		LRK54_RS08665	0.72	+0.9
1,887,880	+		LRK54_RS08665	0.72	-1.4
1,887,880	+		LRK54_RS08665	0.72	-0.1
1,887,880	+		LRK54_RS08665	0.72	-0.5
1,887,880	+		LRK54_RS08665	0.72	-0.5
1,887,880	+		LRK54_RS08665	0.72	+0.7
1,887,880	+		LRK54_RS08665	0.72	+0.2
1,887,880	+		LRK54_RS08665	0.72	+0.0
1,887,880	+		LRK54_RS08665	0.72	+0.3
1,887,880	+		LRK54_RS08665	0.72	+0.9
1,887,880	+		LRK54_RS08665	0.72	+0.9
1,887,880	+		LRK54_RS08665	0.72	-0.0
1,887,880	+		LRK54_RS08665	0.72	+0.4
1,887,880	+		LRK54_RS08665	0.72	-0.1
1,887,880	+		LRK54_RS08665	0.72	-1.0
1,887,880	+		LRK54_RS08665	0.72	-1.3
1,887,881	-		LRK54_RS08665	0.72	+0.4
1,887,881	-		LRK54_RS08665	0.72	-0.9
1,887,881	-		LRK54_RS08665	0.72	-0.1
1,887,881	-		LRK54_RS08665	0.72	+0.1
1,887,881	-		LRK54_RS08665	0.72	-0.4
1,887,881	-		LRK54_RS08665	0.72	+0.9
1,887,881	-		LRK54_RS08665	0.72	-0.5
1,887,881	-		LRK54_RS08665	0.72	+0.6
1,887,881	-		LRK54_RS08665	0.72	-1.0
1,887,881	-		LRK54_RS08665	0.72	-0.8
1,887,881	-		LRK54_RS08665	0.72	+0.9
1,887,881	-		LRK54_RS08665	0.72	+1.2
1,887,881	-		LRK54_RS08665	0.72	-0.5
1,887,881	-		LRK54_RS08665	0.72	-2.4
1,887,881	-		LRK54_RS08665	0.72	-0.3
1,887,881	-		LRK54_RS08665	0.72	-0.5
1,887,881	-		LRK54_RS08665	0.72	+0.3
1,887,881	-		LRK54_RS08665	0.72	-2.1
1,887,881	-		LRK54_RS08665	0.72	+0.4
1,887,881	-		LRK54_RS08665	0.72	+0.5
1,887,881	-		LRK54_RS08665	0.72	-0.8
1,887,881	-		LRK54_RS08665	0.72	-0.7
1,887,881	-		LRK54_RS08665	0.72	-0.9
1,887,881	-		LRK54_RS08665	0.72	+0.7
1,887,886	+		LRK54_RS08665	0.72	+1.2
1,887,886	+		LRK54_RS08665	0.72	-0.1
1,887,886	+		LRK54_RS08665	0.72	-0.4
1,887,886	+		LRK54_RS08665	0.72	+0.6
1,887,886	+		LRK54_RS08665	0.72	-0.9
1,887,886	+		LRK54_RS08665	0.72	-1.1
1,887,886	+		LRK54_RS08665	0.72	+0.9
1,887,886	+		LRK54_RS08665	0.72	+0.1
1,887,886	+		LRK54_RS08665	0.72	+0.5
1,887,886	+		LRK54_RS08665	0.72	-0.1
1,887,886	+		LRK54_RS08665	0.72	+0.9
1,887,886	+		LRK54_RS08665	0.72	+0.3
1,887,887	-		LRK54_RS08665	0.72	-0.1
1,887,887	-		LRK54_RS08665	0.72	-0.6
1,887,887	-		LRK54_RS08665	0.72	+0.7
1,887,887	-		LRK54_RS08665	0.72	-0.3
1,887,887	-		LRK54_RS08665	0.72	+0.9
1,887,887	-		LRK54_RS08665	0.72	-1.5
1,887,958	+		LRK54_RS08665	0.75	+1.0
1,887,958	+		LRK54_RS08665	0.75	+1.3
1,887,958	+		LRK54_RS08665	0.75	+0.1
1,887,958	+		LRK54_RS08665	0.75	-0.1
1,887,959	-		LRK54_RS08665	0.75	+0.1
1,887,959	-		LRK54_RS08665	0.75	+0.0
1,887,959	-		LRK54_RS08665	0.75	-0.1
1,887,959	-		LRK54_RS08665	0.75	-0.1
1,887,959	-		LRK54_RS08665	0.75	+0.4
1,887,959	-		LRK54_RS08665	0.75	+0.4
1,887,959	-		LRK54_RS08665	0.75	+0.3
1,887,959	-		LRK54_RS08665	0.75	-0.4
1,887,970	+		LRK54_RS08665	0.75	+0.4
1,887,970	+		LRK54_RS08665	0.75	+0.6
1,887,970	+		LRK54_RS08665	0.75	-1.3
1,887,970	+		LRK54_RS08665	0.75	+0.6
1,887,970	+		LRK54_RS08665	0.75	-0.8
1,887,970	+		LRK54_RS08665	0.75	+0.1
1,887,970	+		LRK54_RS08665	0.75	+1.2
1,887,970	+		LRK54_RS08665	0.75	-0.4
1,887,970	+		LRK54_RS08665	0.75	-0.1
1,887,970	+		LRK54_RS08665	0.75	-0.7
1,887,970	+		LRK54_RS08665	0.75	+0.1
1,887,970	+		LRK54_RS08665	0.75	-0.7
1,887,970	+		LRK54_RS08665	0.75	+0.7
1,887,970	+		LRK54_RS08665	0.75	+0.5
1,887,970	+		LRK54_RS08665	0.75	-1.7
1,887,970	+		LRK54_RS08665	0.75	-0.5
1,887,970	+		LRK54_RS08665	0.75	+0.3
1,887,970	+		LRK54_RS08665	0.75	+0.8
1,887,970	+		LRK54_RS08665	0.75	+0.3
1,887,970	+		LRK54_RS08665	0.75	-0.3
1,887,970	+		LRK54_RS08665	0.75	-0.0
1,887,970	+		LRK54_RS08665	0.75	+1.9
1,887,970	+		LRK54_RS08665	0.75	+0.1
1,887,970	+		LRK54_RS08665	0.75	+0.1
1,887,970	+		LRK54_RS08665	0.75	+2.3
1,887,970	+		LRK54_RS08665	0.75	-1.0
1,887,970	+		LRK54_RS08665	0.75	-0.3
1,887,970	+		LRK54_RS08665	0.75	+0.2
1,887,970	+		LRK54_RS08665	0.75	-0.5
1,887,970	+		LRK54_RS08665	0.75	-0.9
1,887,970	+		LRK54_RS08665	0.75	+0.4
1,887,970	+		LRK54_RS08665	0.75	+0.3
1,887,970	+		LRK54_RS08665	0.75	-0.4
1,887,970	+		LRK54_RS08665	0.75	-1.1
1,887,970	+		LRK54_RS08665	0.75	-0.4
1,887,970	+		LRK54_RS08665	0.75	-0.5
1,887,970	+		LRK54_RS08665	0.75	+1.2
1,887,970	+		LRK54_RS08665	0.75	-0.7
1,887,970	+		LRK54_RS08665	0.75	+0.9
1,887,970	+		LRK54_RS08665	0.75	-0.3
1,887,970	+		LRK54_RS08665	0.75	+0.9
1,887,970	+		LRK54_RS08665	0.75	-0.5
1,887,971	-		LRK54_RS08665	0.75	-1.7
1,887,971	-		LRK54_RS08665	0.75	-0.4
1,887,971	-		LRK54_RS08665	0.75	-0.5
1,887,971	-		LRK54_RS08665	0.75	+0.6
1,887,971	-		LRK54_RS08665	0.75	+0.0
1,887,971	-		LRK54_RS08665	0.75	-0.4
1,887,971	-		LRK54_RS08665	0.75	-0.6
1,887,971	-		LRK54_RS08665	0.75	-0.7
1,887,971	-		LRK54_RS08665	0.75	-0.7
1,887,971	-		LRK54_RS08665	0.75	+0.4
1,887,971	-		LRK54_RS08665	0.75	-0.2
1,887,971	-		LRK54_RS08665	0.75	+0.8
1,887,971	-		LRK54_RS08665	0.75	+0.0
1,887,971	-		LRK54_RS08665	0.75	+0.5
1,887,971	-		LRK54_RS08665	0.75	+2.4
1,887,971	-		LRK54_RS08665	0.75	-0.4
1,887,971	-		LRK54_RS08665	0.75	+2.9
1,887,971	-		LRK54_RS08665	0.75	+0.1
1,887,971	-		LRK54_RS08665	0.75	-1.1
1,887,971	-		LRK54_RS08665	0.75	+0.2
1,887,971	-		LRK54_RS08665	0.75	-0.5
1,887,971	-		LRK54_RS08665	0.75	-0.1
1,887,971	-		LRK54_RS08665	0.75	+0.6
1,887,971	-		LRK54_RS08665	0.75	-1.0
1,887,971	-		LRK54_RS08665	0.75	+1.6
1,887,971	-		LRK54_RS08665	0.75	-0.1
1,887,971	-		LRK54_RS08665	0.75	+0.1
1,887,971	-		LRK54_RS08665	0.75	+0.6
1,887,971	-		LRK54_RS08665	0.75	+0.2
1,887,971	-		LRK54_RS08665	0.75	+0.2
1,887,971	-		LRK54_RS08665	0.75	+0.9
1,887,971	-		LRK54_RS08665	0.75	-0.1
1,887,971	-		LRK54_RS08665	0.75	+0.9
1,887,971	-		LRK54_RS08665	0.75	+0.2
1,887,971	-		LRK54_RS08665	0.75	-0.5
1,887,971	-		LRK54_RS08665	0.75	-0.1
1,887,971	-		LRK54_RS08665	0.75	-0.6
1,887,971	-		LRK54_RS08665	0.75	-0.1
1,887,971	-		LRK54_RS08665	0.75	+1.6
1,888,417	+				+0.3
1,888,417	+				-0.1
1,888,417	+				-0.5
1,888,417	+				-0.1
1,888,417	+				+0.4
1,888,417	+				-0.0
1,888,417	+				-0.3
1,888,417	+				-0.3
1,888,417	+				+0.3
1,888,417	+				+0.3
1,888,417	+				-1.3
1,888,417	+				+0.8
1,888,417	+				-0.3
1,888,417	+				+0.5
1,888,417	+				-0.7
1,888,417	+				+0.6
1,888,417	+				+0.4
1,888,417	+				-1.0
1,888,417	+				+0.6
1,888,417	+				-2.1
1,888,417	+				+0.6
1,888,417	+				+1.4
1,888,417	+				+0.4
1,888,417	+				+0.1
1,888,417	+				+1.7
1,888,417	+				-2.3
1,888,417	+				-0.6
1,888,417	+				+0.7
1,888,417	+				+1.2
1,888,417	+				+1.4
1,888,417	+				+0.5
1,888,417	+				+2.9
1,888,417	+				+1.9
1,888,417	+				-0.5
1,888,417	+				+0.5
1,888,417	+				+0.8
1,888,418	-				+0.3
1,888,418	-				-0.1
1,888,418	-				+2.4
1,888,418	-				-0.2
1,888,418	-				+0.6
1,888,418	-				-0.7
1,888,418	-				+0.1
1,888,418	-				+0.3
1,888,418	-				+0.5
1,888,418	-				-1.3
1,888,418	-				+1.6
1,888,418	-				+1.9
1,888,418	-				-0.1
1,888,418	-				-0.3
1,888,418	-				-0.4
1,888,418	-				-0.1
1,888,418	-				+0.9
1,888,418	-				+0.3
1,888,418	-				+0.9
1,888,418	-				+1.3
1,888,418	-				+0.3
1,888,418	-				+0.2
1,888,418	-				-1.0
1,888,418	-				-0.1
1,888,418	-				-0.1
1,888,418	-				-0.6
1,888,418	-				+0.3
1,888,447	+				-0.1
1,888,447	+				-0.7
1,888,447	+				+1.2
1,888,447	+				+0.9
1,888,447	+				-0.0
1,888,447	+				-0.6
1,888,447	+				-1.1
1,888,447	+				-0.7
1,888,447	+				+1.4
1,888,447	+				+0.3
1,888,447	+				-1.1
1,888,447	+				+0.4
1,888,447	+				+0.2
1,888,447	+				-0.0
1,888,447	+				-0.0
1,888,447	+				+0.5
1,888,447	+				-1.2
1,888,447	+				-1.5
1,888,447	+				-1.0
1,888,447	+				-0.5
1,888,447	+				+0.2
1,888,447	+				+0.6
1,888,447	+				+0.5
1,888,447	+				-0.9
1,888,447	+				-0.6
1,888,447	+				-0.3
1,888,447	+				-0.4
1,888,448	-				+0.1
1,888,448	-				-0.0
1,888,448	-				+0.2
1,888,448	-				+0.9
1,888,448	-				-0.5
1,888,448	-				+0.4
1,888,448	-				+0.6
1,888,448	-				-0.3
1,888,448	-				-0.1
1,888,448	-				-0.8
1,888,448	-				+1.2
1,888,448	-				+0.4
1,888,448	-				-1.1
1,888,448	-				-2.5
1,888,448	-				+0.8
1,888,448	-				-0.1
1,888,448	-				+0.1
1,888,448	-				+0.5
1,888,448	-				-0.5
1,888,448	-				+0.7
1,888,448	-				+1.4
1,888,448	-				+0.0
1,888,521	+				+0.2
1,888,521	+				+2.4
1,888,521	+				+0.2
1,888,521	+				+0.5
1,888,521	+				-0.8
1,888,522	-				-0.4
1,888,522	-				-1.1
1,888,522	-				-1.8
1,888,522	-				+0.2
1,888,522	-				-1.1
1,888,644	+				-0.0
1,888,644	+				+0.9
1,888,645	-				-0.4
1,888,682	+				+1.9
1,888,682	+				+0.9
1,888,682	+				-0.7
1,888,682	+				-0.5
1,888,683	-				-0.7
1,888,683	-				-0.5
1,888,683	-				+2.4
1,888,683	-				+2.3
1,888,696	+				-0.2
1,888,696	+				+0.0
1,888,696	+				+0.0
1,888,696	+				-0.4
1,888,696	+				+0.3
1,888,696	+				-1.2
1,888,696	+				+2.2
1,888,696	+				+0.5
1,888,696	+				-1.7
1,888,696	+				+0.2
1,888,696	+				-0.1
1,888,696	+				+1.2
1,888,696	+				+0.6
1,888,696	+				-1.3
1,888,696	+				+0.2
1,888,696	+				-0.7
1,888,696	+				+3.3
1,888,696	+				-0.6
1,888,696	+				-1.5
1,888,696	+				-1.6
1,888,696	+				+0.4
1,888,696	+				-0.7
1,888,697	-				-1.3
1,888,697	-				-0.7
1,888,697	-				+0.3
1,888,697	-				+1.4
1,888,697	-				-0.3
1,888,697	-				-0.3
1,888,697	-				+1.2
1,888,697	-				-0.1
1,888,697	-				-0.6
1,888,697	-				-0.2
1,888,697	-				+0.2
1,888,697	-				+0.9
1,888,697	-				-0.1
1,888,697	-				-2.6
1,888,697	-				-2.0
1,888,697	-				-1.5
1,888,697	-				-1.3
1,888,697	-				-0.3
1,888,697	-				+0.2
1,888,697	-				-1.8
1,888,697	-				+2.4
1,888,697	-				-0.1
1,888,697	-				+0.5
1,888,834	+				-0.6
1,888,835	-				-1.0
1,888,835	-				-2.1
1,889,005	+		LRK54_RS08670	0.17	-1.0
1,889,005	+		LRK54_RS08670	0.17	-2.0
1,889,005	+		LRK54_RS08670	0.17	+0.4
1,889,005	+		LRK54_RS08670	0.17	-1.1
1,889,005	+		LRK54_RS08670	0.17	-1.7
1,889,005	+		LRK54_RS08670	0.17	-1.1
1,889,005	+		LRK54_RS08670	0.17	+1.3
1,889,005	+		LRK54_RS08670	0.17	-2.5
1,889,006	-		LRK54_RS08670	0.17	-1.8
1,889,006	-		LRK54_RS08670	0.17	-1.2
1,889,006	-		LRK54_RS08670	0.17	+1.3
1,889,006	-		LRK54_RS08670	0.17	-1.7
1,889,006	-		LRK54_RS08670	0.17	-1.5
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