Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS08585

Experiment: R2A with SpecU metal mix 1 X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with SpecU metal mix 1 X
1,870,291	+				-0.3
1,870,291	+				+0.6
1,870,291	+				+1.5
1,870,291	+				-0.9
1,870,291	+				-0.3
1,870,291	+				-0.7
1,870,291	+				+1.2
1,870,291	+				+1.3
1,870,291	+				-0.4
1,870,291	+				-0.1
1,870,291	+				+0.0
1,870,291	+				+0.5
1,870,291	+				+0.2
1,870,291	+				-1.7
1,870,291	+				+0.3
1,870,291	+				+0.3
1,870,291	+				-0.4
1,870,291	+				+0.3
1,870,291	+				+0.7
1,870,291	+				+0.1
1,870,291	+				-0.8
1,870,291	+				-0.1
1,870,291	+				+2.2
1,870,291	+				-1.1
1,870,291	+				-0.6
1,870,291	+				-0.5
1,870,291	+				-1.6
1,870,291	+				-1.7
1,870,291	+				-0.4
1,870,291	+				-0.3
1,870,291	+				-1.1
1,870,291	+				+0.1
1,870,291	+				+1.1
1,870,291	+				-0.1
1,870,291	+				-0.9
1,870,291	+				+1.2
1,870,291	+				+0.1
1,870,291	+				+0.4
1,870,291	+				-1.1
1,870,291	+				+1.3
1,870,291	+				-0.1
1,870,291	+				-0.1
1,870,291	+				+0.2
1,870,291	+				+0.2
1,870,291	+				+1.1
1,870,291	+				+0.5
1,870,291	+				-1.5
1,870,291	+				-0.9
1,870,291	+				+0.2
1,870,291	+				-1.7
1,870,291	+				-1.1
1,870,291	+				-0.2
1,870,291	+				+0.1
1,870,291	+				-0.7
1,870,291	+				+0.5
1,870,291	+				+0.9
1,870,291	+				+0.0
1,870,291	+				+0.2
1,870,291	+				+0.9
1,870,291	+				+0.9
1,870,291	+				+0.1
1,870,291	+				-0.0
1,870,291	+				-0.1
1,870,291	+				-0.5
1,870,291	+				+0.9
1,870,291	+				-0.4
1,870,291	+				+1.0
1,870,291	+				-1.0
1,870,291	+				-0.2
1,870,291	+				+0.3
1,870,291	+				+0.0
1,870,291	+				-0.7
1,870,291	+				+0.9
1,870,291	+				-0.1
1,870,291	+				-1.1
1,870,291	+				+0.1
1,870,291	+				+0.0
1,870,291	+				-0.4
1,870,291	+				-1.7
1,870,291	+				+0.1
1,870,291	+				+0.8
1,870,292	-				+0.5
1,870,292	-				+0.0
1,870,292	-				+1.3
1,870,292	-				+0.3
1,870,292	-				+0.4
1,870,292	-				+1.9
1,870,292	-				-0.0
1,870,292	-				+0.1
1,870,292	-				+0.3
1,870,292	-				-0.3
1,870,292	-				-0.2
1,870,292	-				-0.6
1,870,292	-				+0.3
1,870,292	-				+0.9
1,870,292	-				-0.5
1,870,292	-				+0.7
1,870,292	-				-0.8
1,870,292	-				+0.6
1,870,292	-				-1.0
1,870,292	-				-0.6
1,870,292	-				+0.0
1,870,292	-				+0.3
1,870,292	-				+1.6
1,870,292	-				-1.2
1,870,292	-				+0.7
1,870,292	-				-0.6
1,870,292	-				-1.4
1,870,292	-				-0.1
1,870,292	-				-0.1
1,870,292	-				-0.4
1,870,292	-				-0.2
1,870,292	-				+1.1
1,870,292	-				-0.8
1,870,292	-				+1.1
1,870,292	-				+1.4
1,870,292	-				-0.1
1,870,292	-				-0.1
1,870,292	-				-0.5
1,870,292	-				+0.7
1,870,292	-				-0.1
1,870,292	-				-0.1
1,870,292	-				+0.2
1,870,292	-				-0.6
1,870,292	-				+1.4
1,870,292	-				-0.1
1,870,292	-				+0.0
1,870,292	-				+0.3
1,870,292	-				+0.9
1,870,292	-				-0.5
1,870,292	-				+1.9
1,870,292	-				-0.5
1,870,292	-				+0.2
1,870,292	-				+0.9
1,870,292	-				-0.7
1,870,292	-				-0.1
1,870,292	-				-0.1
1,870,292	-				+1.0
1,870,292	-				-1.1
1,870,292	-				+0.4
1,870,292	-				+0.4
1,870,292	-				+0.2
1,870,292	-				-1.7
1,870,292	-				+1.4
1,870,292	-				-2.6
1,870,292	-				+0.2
1,870,292	-				-0.7
1,870,292	-				+0.2
1,870,292	-				-0.1
1,870,292	-				-0.5
1,870,292	-				-0.2
1,870,292	-				+0.9
1,870,292	-				+1.7
1,870,292	-				+0.4
1,870,292	-				+1.0
1,870,292	-				+0.3
1,870,292	-				+0.9
1,870,292	-				+0.1
1,870,427	-		LRK54_RS08580	0.17	-0.1
1,870,427	-		LRK54_RS08580	0.17	-0.1
1,870,427	-		LRK54_RS08580	0.17	-0.1
1,870,570	+		LRK54_RS08580	0.44	+0.9
1,870,570	+		LRK54_RS08580	0.44	-0.1
1,870,570	+		LRK54_RS08580	0.44	-0.7
1,870,653	+		LRK54_RS08580	0.60	-1.7
1,870,879	+				-0.1
1,870,879	+				+0.0
1,870,879	+				+0.6
1,870,879	+				+1.1
1,870,879	+				-2.0
1,870,879	+				-0.6
1,870,879	+				+0.4
1,870,879	+				+0.1
1,870,879	+				-0.6
1,870,879	+				-0.0
1,870,879	+				+0.0
1,870,879	+				+1.0
1,870,879	+				-0.3
1,870,879	+				+0.4
1,870,879	+				+0.6
1,870,879	+				-0.3
1,870,880	-				+1.0
1,870,880	-				-0.6
1,870,880	-				-0.1
1,871,043	+				+0.6
1,871,109	+				-1.3
1,871,109	+				-0.7
1,871,109	+				-0.6
1,871,109	+				+0.3
1,871,109	+				-2.7
1,871,109	+				-1.7
1,871,109	+				+0.9
1,871,109	+				-2.8
1,871,109	+				+0.9
1,871,109	+				-0.9
1,871,109	+				-1.6
1,871,109	+				+1.4
1,871,109	+				-1.0
1,871,109	+				-0.8
1,871,109	+				-0.1
1,871,109	+				-1.4
1,871,109	+				-1.3
1,871,109	+				-1.5
1,871,109	+				-1.7
1,871,109	+				-0.1
1,871,109	+				+1.4
1,871,109	+				-2.6
1,871,109	+				-1.8
1,871,109	+				-0.1
1,871,109	+				-0.5
1,871,109	+				-0.6
1,871,109	+				-0.3
1,871,109	+				-2.1
1,871,110	-				-1.7
1,871,110	-				+0.9
1,871,110	-				-0.1
1,871,110	-				-0.6
1,871,110	-				-1.6
1,871,110	-				-1.7
1,871,110	-				+0.9
1,871,110	-				+0.4
1,871,110	-				+0.3
1,871,110	-				-1.0
1,871,110	-				-1.3
1,871,110	-				-1.3
1,871,110	-				-1.1
1,871,110	-				+0.9
1,871,110	-				-2.4
1,871,110	-				-1.1
1,871,110	-				+0.1
1,871,110	-				+0.9
1,871,110	-				-0.8
1,871,110	-				-3.2
1,871,110	-				-1.7
1,871,110	-				+0.4
1,871,110	-				+0.9
1,871,110	-				+0.3
1,871,110	-				-1.5
1,871,110	-				-0.7
1,871,112	+				-0.6
1,871,112	+				-0.5
1,871,113	-				-1.7
1,871,113	-				-2.1
1,871,113	-				+0.2
1,871,145	+				-2.0
1,871,145	+				+0.9
1,871,145	+				-1.4
1,871,145	+				-0.1
1,871,145	+				+2.2
1,871,145	+				-1.0
1,871,145	+				-0.1
1,871,145	+				-0.7
1,871,145	+				-0.1
1,871,145	+				-0.9
1,871,145	+				+0.1
1,871,145	+				-1.0
1,871,146	-				-1.0
1,871,146	-				-1.5
1,871,146	-				+1.9
1,871,146	-				-0.4
1,871,146	-				-1.7
1,871,146	-				-2.0
1,871,146	-				-0.1
1,871,146	-				-1.5
1,871,146	-				-0.6
1,871,146	-				+0.1
1,871,146	-				-0.1
1,871,146	-				-2.0
1,871,146	-				-1.4
1,871,146	-				-1.0
1,871,146	-				+0.3
1,871,146	-				-1.7
1,871,146	-				-0.1
1,871,146	-				-2.3
1,871,146	-				-0.7
1,871,146	-				-1.4
1,871,146	-				-0.1
1,871,146	-				-1.5
1,871,146	-				-1.1
1,871,208	+				-0.1
1,871,208	+				-1.7
1,871,208	+				-1.0
1,871,208	+				-1.1
1,871,208	+				-1.1
1,871,208	+				-0.4
1,871,208	+				-1.5
1,871,208	+				-0.1
1,871,208	+				-1.5
1,871,208	+				-0.1
1,871,208	+				-1.0
1,871,208	+				+0.0
1,871,208	+				-2.1
1,871,208	+				+0.1
1,871,208	+				-2.0
1,871,208	+				-0.1
1,871,208	+				-2.7
1,871,208	+				+0.3
1,871,208	+				-0.7
1,871,208	+				-2.0
1,871,208	+				-0.1
1,871,208	+				-1.1
1,871,208	+				-1.6
1,871,208	+				-0.3
1,871,208	+				-0.1
1,871,208	+				-1.8
1,871,208	+				-1.5
1,871,208	+				-0.1
1,871,208	+				+1.9
1,871,208	+				-1.0
1,871,208	+				-1.0
1,871,208	+				-0.7
1,871,208	+				-1.3
1,871,208	+				-2.5
1,871,208	+				-1.7
1,871,208	+				-0.7
1,871,208	+				+0.9
1,871,208	+				-2.6
1,871,209	-				-0.5
1,871,209	-				-1.7
1,871,209	-				-1.1
1,871,209	-				-3.0
1,871,209	-				-1.5
1,871,209	-				-1.1
1,871,209	-				-1.7
1,871,209	-				-0.7
1,871,209	-				-1.1
1,871,209	-				+0.9
1,871,209	-				-0.1
1,871,209	-				-1.3
1,871,209	-				-0.6
1,871,209	-				-1.7
1,871,209	-				-0.1
1,871,209	-				-0.7
1,871,209	-				-1.5
1,871,209	-				-3.5
1,871,209	-				-2.5
1,871,209	-				+0.9
1,871,209	-				-1.7
1,871,209	-				-0.1
1,871,209	-				-0.4
1,871,209	-				-1.4
1,871,209	-				-1.7
1,871,209	-				-1.5
1,871,209	-				-0.4
1,871,209	-				-0.7
1,871,209	-				-2.0
1,871,209	-				-2.5
1,871,214	+		LRK54_RS08585	0.10	+0.9
1,871,214	+		LRK54_RS08585	0.10	-2.1
1,871,214	+		LRK54_RS08585	0.10	-2.0
1,871,214	+		LRK54_RS08585	0.10	-2.0
1,871,214	+				+0.9
1,871,214	+		LRK54_RS08585	0.10	-0.7
1,871,214	+		LRK54_RS08585	0.10	-1.0
1,871,214	+		LRK54_RS08585	0.10	-1.1
1,871,214	+		LRK54_RS08585	0.10	-1.3
1,871,214	+		LRK54_RS08585	0.10	+0.5
1,871,214	+		LRK54_RS08585	0.10	-1.7
1,871,214	+		LRK54_RS08585	0.10	-0.1
1,871,214	+		LRK54_RS08585	0.10	-1.7
1,871,214	+		LRK54_RS08585	0.10	-1.4
1,871,214	+		LRK54_RS08585	0.10	-0.7
1,871,215	-		LRK54_RS08585	0.10	-1.5
1,871,215	-		LRK54_RS08585	0.10	+0.9
1,871,215	-		LRK54_RS08585	0.10	-2.1
1,871,215	-		LRK54_RS08585	0.10	-1.7
1,871,215	-		LRK54_RS08585	0.10	-0.6
1,871,215	-		LRK54_RS08585	0.10	-1.5
1,871,215	-		LRK54_RS08585	0.10	+0.9
1,871,215	-		LRK54_RS08585	0.10	-0.7
1,871,215	-		LRK54_RS08585	0.10	-1.7
1,871,215	-		LRK54_RS08585	0.10	-1.5
1,871,215	-		LRK54_RS08585	0.10	-0.7
1,871,215	-		LRK54_RS08585	0.10	-1.1
1,871,215	-		LRK54_RS08585	0.10	-1.1
1,871,215	-		LRK54_RS08585	0.10	-2.1
1,871,215	-		LRK54_RS08585	0.10	-1.3
1,871,215	-		LRK54_RS08585	0.10	-1.1
1,871,215	-		LRK54_RS08585	0.10	-0.7
1,871,215	-		LRK54_RS08585	0.10	-1.3
1,871,215	-		LRK54_RS08585	0.10	+0.3
1,871,215	-		LRK54_RS08585	0.10	-2.2
1,871,229	+		LRK54_RS08585	0.11	-3.1
1,871,230	-		LRK54_RS08585	0.11	-1.7
1,871,230	-		LRK54_RS08585	0.11	-2.3
1,871,232	+		LRK54_RS08585	0.11	-1.8
1,871,232	+		LRK54_RS08585	0.11	-0.7
1,871,232	+		LRK54_RS08585	0.11	-2.0
1,871,232	+		LRK54_RS08585	0.11	-0.7
1,871,232	+		LRK54_RS08585	0.11	-0.7
1,871,232	+		LRK54_RS08585	0.11	-1.4
1,871,232	+		LRK54_RS08585	0.11	-2.0
1,871,232	+		LRK54_RS08585	0.11	-0.3
1,871,232	+		LRK54_RS08585	0.11	-1.7
1,871,232	+		LRK54_RS08585	0.11	-0.1
1,871,232	+		LRK54_RS08585	0.11	+0.3
1,871,232	+		LRK54_RS08585	0.11	+0.3
1,871,232	+		LRK54_RS08585	0.11	-0.7
1,871,232	+		LRK54_RS08585	0.11	-1.0
1,871,232	+		LRK54_RS08585	0.11	-1.7
1,871,232	+		LRK54_RS08585	0.11	-1.5
1,871,232	+		LRK54_RS08585	0.11	-1.1
1,871,232	+		LRK54_RS08585	0.11	+0.0
1,871,232	+		LRK54_RS08585	0.11	-1.3
1,871,232	+		LRK54_RS08585	0.11	-1.5
1,871,232	+		LRK54_RS08585	0.11	-0.6
1,871,232	+		LRK54_RS08585	0.11	-2.0
1,871,232	+		LRK54_RS08585	0.11	-1.1
1,871,232	+		LRK54_RS08585	0.11	-1.7
1,871,232	+		LRK54_RS08585	0.11	-0.4
1,871,232	+		LRK54_RS08585	0.11	-1.0
1,871,232	+		LRK54_RS08585	0.11	+0.1
1,871,232	+		LRK54_RS08585	0.11	-2.1
1,871,232	+		LRK54_RS08585	0.11	+0.9
1,871,232	+		LRK54_RS08585	0.11	-0.7
1,871,232	+		LRK54_RS08585	0.11	-0.9
1,871,232	+		LRK54_RS08585	0.11	-2.6
1,871,232	+		LRK54_RS08585	0.11	+0.1
1,871,232	+		LRK54_RS08585	0.11	+2.4
1,871,232	+		LRK54_RS08585	0.11	-2.4
1,871,232	+		LRK54_RS08585	0.11	-1.7
1,871,232	+		LRK54_RS08585	0.11	-0.7
1,871,232	+		LRK54_RS08585	0.11	-0.7
1,871,232	+		LRK54_RS08585	0.11	-0.7
1,871,232	+		LRK54_RS08585	0.11	-0.4
1,871,232	+		LRK54_RS08585	0.11	-0.7
1,871,232	+		LRK54_RS08585	0.11	+0.5
1,871,232	+		LRK54_RS08585	0.11	-0.1
1,871,232	+		LRK54_RS08585	0.11	-1.7
1,871,232	+		LRK54_RS08585	0.11	-1.5
1,871,232	+		LRK54_RS08585	0.11	-1.4
1,871,232	+		LRK54_RS08585	0.11	-0.7
1,871,232	+		LRK54_RS08585	0.11	-0.5
1,871,232	+		LRK54_RS08585	0.11	-0.6
1,871,232	+		LRK54_RS08585	0.11	-0.3
1,871,232	+		LRK54_RS08585	0.11	-3.0
1,871,232	+		LRK54_RS08585	0.11	+0.9
1,871,232	+		LRK54_RS08585	0.11	-2.1
1,871,233	-		LRK54_RS08585	0.12	-1.5
1,871,233	-		LRK54_RS08585	0.12	+0.3
1,871,233	-		LRK54_RS08585	0.12	-1.1
1,871,233	-		LRK54_RS08585	0.12	-1.8
1,871,233	-		LRK54_RS08585	0.12	-0.1
1,871,233	-		LRK54_RS08585	0.12	-3.6
1,871,233	-		LRK54_RS08585	0.12	+0.5
1,871,233	-		LRK54_RS08585	0.12	+0.9
1,871,233	-		LRK54_RS08585	0.12	-2.5
1,871,233	-		LRK54_RS08585	0.12	-0.1
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