Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS08125

Experiment: R2A with SpecU metal mix 1 X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with SpecU metal mix 1 X
1,778,531	+		LRK54_RS08120	0.21	+1.4
1,778,531	+		LRK54_RS08120	0.21	+0.6
1,778,651	+		LRK54_RS08120	0.37	+0.7
1,778,675	+		LRK54_RS08120	0.40	+0.4
1,778,675	+		LRK54_RS08120	0.40	+0.4
1,778,675	+		LRK54_RS08120	0.40	-0.3
1,778,675	+		LRK54_RS08120	0.40	+0.0
1,778,676	-		LRK54_RS08120	0.40	-1.4
1,778,676	-		LRK54_RS08120	0.40	-1.2
1,778,679	+		LRK54_RS08120	0.40	-1.8
1,778,681	+		LRK54_RS08120	0.41	+0.9
1,778,681	+		LRK54_RS08120	0.41	+1.8
1,778,681	+		LRK54_RS08120	0.41	-0.8
1,778,681	+		LRK54_RS08120	0.41	-0.4
1,778,681	+		LRK54_RS08120	0.41	-0.1
1,778,681	+		LRK54_RS08120	0.41	+0.4
1,778,681	+		LRK54_RS08120	0.41	-1.2
1,778,682	-		LRK54_RS08120	0.41	-0.2
1,778,682	-		LRK54_RS08120	0.41	+0.2
1,778,682	-		LRK54_RS08120	0.41	+0.1
1,778,682	-		LRK54_RS08120	0.41	-0.3
1,778,682	-		LRK54_RS08120	0.41	-1.1
1,778,682	-		LRK54_RS08120	0.41	-0.1
1,778,717	+		LRK54_RS08120	0.45	+1.0
1,778,717	+		LRK54_RS08120	0.45	+0.4
1,778,717	+		LRK54_RS08120	0.45	+0.1
1,778,717	+		LRK54_RS08120	0.45	+0.4
1,778,717	+		LRK54_RS08120	0.45	+0.5
1,778,718	-		LRK54_RS08120	0.46	+1.0
1,778,718	-		LRK54_RS08120	0.46	-0.5
1,778,718	-		LRK54_RS08120	0.46	-1.9
1,778,718	-		LRK54_RS08120	0.46	+0.2
1,778,756	+		LRK54_RS08120	0.51	-1.1
1,778,756	+		LRK54_RS08120	0.51	-1.6
1,778,757	-		LRK54_RS08120	0.51	-0.2
1,778,757	-		LRK54_RS08120	0.51	+0.2
1,778,757	-		LRK54_RS08120	0.51	+0.4
1,778,757	-		LRK54_RS08120	0.51	+0.3
1,778,757	-		LRK54_RS08120	0.51	-0.6
1,778,757	-		LRK54_RS08120	0.51	-0.8
1,778,768	+		LRK54_RS08120	0.52	-0.0
1,778,774	+		LRK54_RS08120	0.53	-0.5
1,778,775	-		LRK54_RS08120	0.53	-1.9
1,778,781	-		LRK54_RS08120	0.54	+0.1
1,778,781	-		LRK54_RS08120	0.54	-0.1
1,778,781	-		LRK54_RS08120	0.54	+0.8
1,778,781	-		LRK54_RS08120	0.54	+0.1
1,778,834	+		LRK54_RS08120	0.61	+0.8
1,778,834	+		LRK54_RS08120	0.61	+0.8
1,778,835	-		LRK54_RS08120	0.61	-0.5
1,778,835	-		LRK54_RS08120	0.61	-1.1
1,778,925	-		LRK54_RS08120	0.73	-1.2
1,778,925	-		LRK54_RS08120	0.73	+0.4
1,778,925	-		LRK54_RS08120	0.73	+0.3
1,779,005	+		LRK54_RS08120	0.83	+0.8
1,779,005	+		LRK54_RS08120	0.83	-0.6
1,779,005	+		LRK54_RS08120	0.83	-1.8
1,779,005	+		LRK54_RS08120	0.83	+0.6
1,779,006	-		LRK54_RS08120	0.83	-1.0
1,779,427	+				+0.1
1,779,428	-				-0.5
1,779,432	+				+0.2
1,779,432	+				-0.8
1,779,432	+				+0.7
1,779,432	+				+0.5
1,779,432	+				+0.0
1,779,432	+				-1.6
1,779,432	+				-0.5
1,779,432	+				+0.7
1,779,433	-				-1.6
1,779,433	-				-1.2
1,779,433	-				-0.1
1,779,433	-				-0.2
1,779,433	-				+0.8
1,779,433	-				-0.8
1,779,433	-				+3.0
1,779,433	-				-1.2
1,779,669	+		LRK54_RS08125	0.22	-0.8
1,779,669	+		LRK54_RS08125	0.22	-0.2
1,779,669	+		LRK54_RS08125	0.22	-0.9
1,779,669	+		LRK54_RS08125	0.22	+0.8
1,779,669	+		LRK54_RS08125	0.22	-1.5
1,779,669	+		LRK54_RS08125	0.22	-2.0
1,779,670	-		LRK54_RS08125	0.22	+0.2
1,779,670	-		LRK54_RS08125	0.22	-1.2
1,779,726	+		LRK54_RS08125	0.29	-0.0
1,779,726	+		LRK54_RS08125	0.29	+0.8
1,779,726	+		LRK54_RS08125	0.29	-1.0
1,779,726	+		LRK54_RS08125	0.29	-0.1
1,779,726	+		LRK54_RS08125	0.29	-0.1
1,779,726	+		LRK54_RS08125	0.29	-2.2
1,779,727	-		LRK54_RS08125	0.29	-1.2
1,779,727	-		LRK54_RS08125	0.29	-3.1
1,779,727	-		LRK54_RS08125	0.29	-2.9
1,779,727	-		LRK54_RS08125	0.29	-1.2
1,779,727	-		LRK54_RS08125	0.29	-1.0
1,779,727	-		LRK54_RS08125	0.29	-3.2
1,779,727	-		LRK54_RS08125	0.29	-0.2
1,780,068	+		LRK54_RS08125	0.72	+1.4
1,780,068	+		LRK54_RS08125	0.72	-0.6
1,780,068	+		LRK54_RS08125	0.72	-1.5
1,780,068	+		LRK54_RS08125	0.72	-2.3
1,780,068	+		LRK54_RS08125	0.72	-0.8
1,780,068	+		LRK54_RS08125	0.72	-1.4
1,780,068	+		LRK54_RS08125	0.72	+1.8
1,780,068	+		LRK54_RS08125	0.72	-2.3
1,780,068	+		LRK54_RS08125	0.72	-2.2
1,780,068	+		LRK54_RS08125	0.72	-0.2
1,780,068	+		LRK54_RS08125	0.72	-1.1
1,780,068	+		LRK54_RS08125	0.72	-0.6
1,780,068	+		LRK54_RS08125	0.72	+0.5
1,780,068	+		LRK54_RS08125	0.72	+0.0
1,780,069	-		LRK54_RS08125	0.72	-2.3
1,780,069	-		LRK54_RS08125	0.72	-1.8
1,780,069	-		LRK54_RS08125	0.72	-1.9
1,780,069	-		LRK54_RS08125	0.72	+0.8
1,780,069	-		LRK54_RS08125	0.72	+1.4
1,780,069	-		LRK54_RS08125	0.72	-1.1
1,780,069	-		LRK54_RS08125	0.72	+0.8
1,780,069	-		LRK54_RS08125	0.72	-1.2
1,780,069	-		LRK54_RS08125	0.72	-1.2
1,780,069	-		LRK54_RS08125	0.72	-0.2
1,780,069	-		LRK54_RS08125	0.72	-0.8
1,780,069	-		LRK54_RS08125	0.72	-1.3
1,780,069	-		LRK54_RS08125	0.72	-1.5
1,780,069	-		LRK54_RS08125	0.72	-1.5
1,780,069	-		LRK54_RS08125	0.72	-0.4
1,780,069	-		LRK54_RS08125	0.72	-0.5
1,780,069	-		LRK54_RS08125	0.72	-0.2
1,780,069	-		LRK54_RS08125	0.72	+0.8
1,780,083	+		LRK54_RS08125	0.74	-1.8
1,780,204	-		LRK54_RS08125	0.89	-2.1
1,780,204	-		LRK54_RS08125	0.89	+0.2
1,780,204	-		LRK54_RS08125	0.89	+1.8
1,780,239	+				-2.4
1,780,240	-				+0.4
1,780,337	+				+0.5
1,780,338	-				+0.1
1,780,727	+		LRK54_RS08130	0.40	-1.5
1,780,733	+		LRK54_RS08130	0.41	-0.0
1,780,733	+		LRK54_RS08130	0.41	+1.5
1,780,733	+		LRK54_RS08130	0.41	+0.1
1,780,733	+		LRK54_RS08130	0.41	+1.0
1,780,733	+		LRK54_RS08130	0.41	-0.5
1,780,733	+		LRK54_RS08130	0.41	+0.4
1,780,733	+		LRK54_RS08130	0.41	+0.3
1,780,733	+		LRK54_RS08130	0.41	-0.6
1,780,733	+		LRK54_RS08130	0.41	+0.0
1,780,733	+		LRK54_RS08130	0.41	+2.6
1,780,733	+		LRK54_RS08130	0.41	+0.2
1,780,733	+		LRK54_RS08130	0.41	-1.3
1,780,733	+		LRK54_RS08130	0.41	-1.1
1,780,733	+		LRK54_RS08130	0.41	+0.1
1,780,733	+		LRK54_RS08130	0.41	-0.5
1,780,733	+		LRK54_RS08130	0.41	-1.2
1,780,733	+		LRK54_RS08130	0.41	-1.3
1,780,733	+		LRK54_RS08130	0.41	+0.5
1,780,733	+		LRK54_RS08130	0.41	+0.2
1,780,733	+		LRK54_RS08130	0.41	-1.0
1,780,733	+		LRK54_RS08130	0.41	-0.1
1,780,733	+		LRK54_RS08130	0.41	-1.0
1,780,733	+		LRK54_RS08130	0.41	-0.7
1,780,733	+		LRK54_RS08130	0.41	-0.7
1,780,733	+		LRK54_RS08130	0.41	+0.1
1,780,733	+		LRK54_RS08130	0.41	+0.9
1,780,733	+		LRK54_RS08130	0.41	+0.3
1,780,733	+		LRK54_RS08130	0.41	+1.2
1,780,733	+		LRK54_RS08130	0.41	-0.0
1,780,733	+		LRK54_RS08130	0.41	+0.6
1,780,733	+		LRK54_RS08130	0.41	-0.3
1,780,733	+		LRK54_RS08130	0.41	+0.1
1,780,733	+		LRK54_RS08130	0.41	-0.4
1,780,733	+		LRK54_RS08130	0.41	-1.0
1,780,733	+		LRK54_RS08130	0.41	-0.3
1,780,733	+		LRK54_RS08130	0.41	-0.5
1,780,733	+		LRK54_RS08130	0.41	+0.2
1,780,733	+		LRK54_RS08130	0.41	+1.2
1,780,733	+		LRK54_RS08130	0.41	+1.1
1,780,733	+		LRK54_RS08130	0.41	-1.8
1,780,733	+		LRK54_RS08130	0.41	-1.3
1,780,733	+		LRK54_RS08130	0.41	+0.2
1,780,733	+		LRK54_RS08130	0.41	-0.2
1,780,733	+		LRK54_RS08130	0.41	+0.2
1,780,733	+		LRK54_RS08130	0.41	-1.8
1,780,734	-		LRK54_RS08130	0.41	-1.2
1,780,734	-		LRK54_RS08130	0.41	+0.1
1,780,734	-		LRK54_RS08130	0.41	-0.2
1,780,734	-		LRK54_RS08130	0.41	+0.8
1,780,734	-		LRK54_RS08130	0.41	+0.8
1,780,734	-		LRK54_RS08130	0.41	+0.6
1,780,734	-		LRK54_RS08130	0.41	-1.8
1,780,734	-		LRK54_RS08130	0.41	+0.6
1,780,734	-		LRK54_RS08130	0.41	+1.2
1,780,734	-		LRK54_RS08130	0.41	+0.7
1,780,734	-		LRK54_RS08130	0.41	+0.5
1,780,734	-		LRK54_RS08130	0.41	-1.4
1,780,734	-		LRK54_RS08130	0.41	+0.4
1,780,734	-		LRK54_RS08130	0.41	-0.6
1,780,734	-		LRK54_RS08130	0.41	+0.1
1,780,734	-		LRK54_RS08130	0.41	-1.5
1,780,734	-		LRK54_RS08130	0.41	+0.3
1,780,734	-		LRK54_RS08130	0.41	-0.2
1,780,734	-		LRK54_RS08130	0.41	+1.6
1,780,734	-		LRK54_RS08130	0.41	+0.2
1,780,734	-		LRK54_RS08130	0.41	-0.4
1,780,734	-		LRK54_RS08130	0.41	+0.2
1,780,734	-		LRK54_RS08130	0.41	-0.1
1,780,734	-		LRK54_RS08130	0.41	-0.7
1,780,734	-		LRK54_RS08130	0.41	-0.9
1,780,734	-		LRK54_RS08130	0.41	+0.2
1,780,734	-		LRK54_RS08130	0.41	-2.2
1,780,734	-		LRK54_RS08130	0.41	+0.8
1,780,734	-		LRK54_RS08130	0.41	-0.3
1,780,734	-		LRK54_RS08130	0.41	-0.2
1,780,734	-		LRK54_RS08130	0.41	+0.8
1,780,734	-		LRK54_RS08130	0.41	-1.0
1,780,734	-		LRK54_RS08130	0.41	-0.2
1,780,734	-		LRK54_RS08130	0.41	+0.3
1,780,734	-		LRK54_RS08130	0.41	-0.2
1,780,734	-		LRK54_RS08130	0.41	-1.2
1,780,734	-		LRK54_RS08130	0.41	+0.3
1,780,734	-		LRK54_RS08130	0.41	-0.1
1,780,734	-		LRK54_RS08130	0.41	-0.2
1,780,734	-		LRK54_RS08130	0.41	-0.4
1,780,734	-		LRK54_RS08130	0.41	+0.2
1,780,734	-		LRK54_RS08130	0.41	-0.0
1,780,734	-		LRK54_RS08130	0.41	-0.3
1,780,734	-		LRK54_RS08130	0.41	-1.4
1,780,734	-		LRK54_RS08130	0.41	+0.8
1,780,734	-		LRK54_RS08130	0.41	-0.3
1,780,784	+		LRK54_RS08130	0.46	-1.0
1,780,784	+		LRK54_RS08130	0.46	-0.8
1,780,784	+		LRK54_RS08130	0.46	+0.1
1,780,784	+		LRK54_RS08130	0.46	+0.0
1,780,784	+		LRK54_RS08130	0.46	-0.8
1,780,784	+		LRK54_RS08130	0.46	+0.5
1,780,784	+		LRK54_RS08130	0.46	-0.1
1,780,785	-		LRK54_RS08130	0.46	+0.8
1,780,785	-		LRK54_RS08130	0.46	-0.1
1,780,785	-		LRK54_RS08130	0.46	-0.7
1,780,785	-		LRK54_RS08130	0.46	+0.1
1,780,796	+		LRK54_RS08130	0.47	+1.2
1,780,796	+		LRK54_RS08130	0.47	-1.1
1,780,796	+		LRK54_RS08130	0.47	+0.7
1,780,796	+		LRK54_RS08130	0.47	+0.0
1,780,797	-		LRK54_RS08130	0.47	+0.1
1,780,797	-		LRK54_RS08130	0.47	-1.0
1,780,797	-		LRK54_RS08130	0.47	-1.9
1,780,797	-		LRK54_RS08130	0.47	+0.6
1,780,797	-		LRK54_RS08130	0.47	+0.7
1,780,829	+		LRK54_RS08130	0.51	+1.2
1,780,829	+		LRK54_RS08130	0.51	+0.1