Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS07660

Experiment: R2A with SpecU metal mix 1 X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with SpecU metal mix 1 X
1,658,000	+		LRK54_RS07655	0.67	+0.2
1,658,000	+		LRK54_RS07655	0.67	+0.2
1,658,000	+		LRK54_RS07655	0.67	-0.9
1,658,000	+		LRK54_RS07655	0.67	+0.4
1,658,000	+		LRK54_RS07655	0.67	+0.1
1,658,001	-		LRK54_RS07655	0.67	-0.2
1,658,001	-		LRK54_RS07655	0.67	+0.0
1,658,001	-		LRK54_RS07655	0.67	-1.8
1,658,001	-		LRK54_RS07655	0.67	+0.2
1,658,001	-		LRK54_RS07655	0.67	+0.5
1,658,001	-		LRK54_RS07655	0.67	-0.9
1,658,001	-		LRK54_RS07655	0.67	+0.7
1,658,034	-		LRK54_RS07655	0.69	+0.1
1,658,063	+		LRK54_RS07655	0.70	+0.4
1,658,063	+		LRK54_RS07655	0.70	+0.1
1,658,063	+		LRK54_RS07655	0.70	+0.8
1,658,063	+		LRK54_RS07655	0.70	-0.4
1,658,063	+		LRK54_RS07655	0.70	-0.6
1,658,063	+		LRK54_RS07655	0.70	-0.2
1,658,063	+		LRK54_RS07655	0.70	+1.2
1,658,063	+		LRK54_RS07655	0.70	+0.8
1,658,063	+		LRK54_RS07655	0.70	-0.7
1,658,063	+		LRK54_RS07655	0.70	-0.0
1,658,063	+		LRK54_RS07655	0.70	+0.0
1,658,063	+		LRK54_RS07655	0.70	-1.8
1,658,063	+		LRK54_RS07655	0.70	-0.1
1,658,063	+		LRK54_RS07655	0.70	+0.0
1,658,063	+		LRK54_RS07655	0.70	+0.2
1,658,063	+		LRK54_RS07655	0.70	-1.0
1,658,063	+		LRK54_RS07655	0.70	-0.0
1,658,063	+		LRK54_RS07655	0.70	+0.4
1,658,063	+		LRK54_RS07655	0.70	+0.2
1,658,063	+		LRK54_RS07655	0.70	-0.8
1,658,063	+		LRK54_RS07655	0.70	+2.1
1,658,063	+		LRK54_RS07655	0.70	-0.6
1,658,063	+		LRK54_RS07655	0.70	-0.2
1,658,063	+		LRK54_RS07655	0.70	+0.9
1,658,064	-		LRK54_RS07655	0.70	+0.8
1,658,064	-		LRK54_RS07655	0.70	-0.2
1,658,064	-		LRK54_RS07655	0.70	+0.2
1,658,064	-		LRK54_RS07655	0.70	+1.1
1,658,064	-		LRK54_RS07655	0.70	-0.7
1,658,064	-		LRK54_RS07655	0.70	+0.5
1,658,064	-		LRK54_RS07655	0.70	+0.0
1,658,064	-		LRK54_RS07655	0.70	+0.1
1,658,064	-		LRK54_RS07655	0.70	+0.1
1,658,064	-		LRK54_RS07655	0.70	+0.7
1,658,064	-		LRK54_RS07655	0.70	+0.1
1,658,064	-		LRK54_RS07655	0.70	+0.8
1,658,064	-		LRK54_RS07655	0.70	-1.0
1,658,064	-		LRK54_RS07655	0.70	-1.5
1,658,064	-		LRK54_RS07655	0.70	+0.2
1,658,064	-		LRK54_RS07655	0.70	-0.2
1,658,064	-		LRK54_RS07655	0.70	-0.6
1,658,064	-		LRK54_RS07655	0.70	+0.5
1,658,064	-		LRK54_RS07655	0.70	-0.3
1,658,064	-		LRK54_RS07655	0.70	-0.9
1,658,064	-		LRK54_RS07655	0.70	-0.8
1,658,064	-		LRK54_RS07655	0.70	-0.8
1,658,064	-		LRK54_RS07655	0.70	+0.4
1,658,064	-		LRK54_RS07655	0.70	-0.1
1,658,064	-		LRK54_RS07655	0.70	+0.0
1,658,064	-		LRK54_RS07655	0.70	-0.5
1,658,064	-		LRK54_RS07655	0.70	-0.2
1,658,064	-		LRK54_RS07655	0.70	+0.7
1,658,064	-		LRK54_RS07655	0.70	+0.3
1,658,064	-		LRK54_RS07655	0.70	-0.1
1,658,064	-		LRK54_RS07655	0.70	+0.3
1,658,064	-		LRK54_RS07655	0.70	-0.8
1,658,064	-		LRK54_RS07655	0.70	-0.6
1,658,064	-		LRK54_RS07655	0.70	-0.2
1,658,064	-		LRK54_RS07655	0.70	-0.2
1,658,064	-		LRK54_RS07655	0.70	+2.0
1,658,180	+		LRK54_RS07655	0.75	-0.6
1,658,180	+		LRK54_RS07655	0.75	-0.2
1,658,180	+		LRK54_RS07655	0.75	-2.1
1,658,180	+		LRK54_RS07655	0.75	-0.8
1,658,180	+		LRK54_RS07655	0.75	-0.8
1,658,180	+		LRK54_RS07655	0.75	-1.2
1,658,180	+		LRK54_RS07655	0.75	-0.4
1,658,180	+		LRK54_RS07655	0.75	-0.9
1,658,180	+		LRK54_RS07655	0.75	-0.5
1,658,181	-		LRK54_RS07655	0.75	-1.2
1,658,181	-		LRK54_RS07655	0.75	+0.8
1,658,181	-		LRK54_RS07655	0.75	-0.6
1,658,181	-		LRK54_RS07655	0.75	+0.6
1,658,181	-		LRK54_RS07655	0.75	-0.1
1,658,181	-		LRK54_RS07655	0.75	-0.0
1,658,360	+		LRK54_RS07655	0.83	+0.0
1,658,360	+		LRK54_RS07655	0.83	+0.2
1,658,360	+		LRK54_RS07655	0.83	-0.0
1,658,360	+		LRK54_RS07655	0.83	-0.9
1,658,360	+		LRK54_RS07655	0.83	+0.1
1,658,360	+		LRK54_RS07655	0.83	-0.2
1,658,360	+		LRK54_RS07655	0.83	-0.7
1,658,360	+		LRK54_RS07655	0.83	+0.3
1,658,361	-		LRK54_RS07655	0.83	-0.3
1,658,361	-		LRK54_RS07655	0.83	-0.2
1,658,361	-		LRK54_RS07655	0.83	+0.3
1,658,361	-		LRK54_RS07655	0.83	-1.1
1,658,361	-		LRK54_RS07655	0.83	-0.2
1,658,361	-		LRK54_RS07655	0.83	-0.8
1,658,421	+		LRK54_RS07655	0.86	+0.5
1,658,421	+		LRK54_RS07655	0.86	+2.4
1,658,421	+		LRK54_RS07655	0.86	-3.3
1,658,422	-		LRK54_RS07655	0.86	+0.3
1,658,423	+		LRK54_RS07655	0.86	+1.4
1,658,423	+		LRK54_RS07655	0.86	-0.5
1,658,423	+		LRK54_RS07655	0.86	-1.8
1,658,423	+		LRK54_RS07655	0.86	-0.2
1,658,423	+		LRK54_RS07655	0.86	-0.5
1,658,423	+		LRK54_RS07655	0.86	+0.1
1,658,423	+		LRK54_RS07655	0.86	-0.2
1,658,423	+		LRK54_RS07655	0.86	-2.2
1,658,423	+		LRK54_RS07655	0.86	+0.2
1,658,423	+		LRK54_RS07655	0.86	-1.8
1,658,423	+		LRK54_RS07655	0.86	+0.2
1,658,423	+		LRK54_RS07655	0.86	-0.0
1,658,423	+		LRK54_RS07655	0.86	+0.6
1,658,423	+		LRK54_RS07655	0.86	-0.2
1,658,423	+		LRK54_RS07655	0.86	-0.3
1,658,423	+		LRK54_RS07655	0.86	-1.4
1,658,423	+		LRK54_RS07655	0.86	+0.5
1,658,423	+		LRK54_RS07655	0.86	+0.4
1,658,423	+		LRK54_RS07655	0.86	-0.4
1,658,423	+		LRK54_RS07655	0.86	-1.9
1,658,423	+		LRK54_RS07655	0.86	-0.4
1,658,423	+		LRK54_RS07655	0.86	+1.0
1,658,423	+		LRK54_RS07655	0.86	-0.5
1,658,423	+		LRK54_RS07655	0.86	-0.5
1,658,423	+		LRK54_RS07655	0.86	+2.8
1,658,423	+		LRK54_RS07655	0.86	-1.5
1,658,423	+		LRK54_RS07655	0.86	+0.3
1,658,423	+		LRK54_RS07655	0.86	-0.6
1,658,423	+		LRK54_RS07655	0.86	+0.8
1,658,423	+		LRK54_RS07655	0.86	-0.3
1,658,423	+		LRK54_RS07655	0.86	-0.2
1,658,423	+		LRK54_RS07655	0.86	+0.2
1,658,423	+		LRK54_RS07655	0.86	-1.2
1,658,423	+		LRK54_RS07655	0.86	-0.2
1,658,423	+		LRK54_RS07655	0.86	-0.6
1,658,423	+		LRK54_RS07655	0.86	+0.5
1,658,423	+		LRK54_RS07655	0.86	-1.2
1,658,423	+		LRK54_RS07655	0.86	+0.2
1,658,423	+		LRK54_RS07655	0.86	-0.4
1,658,423	+		LRK54_RS07655	0.86	-1.0
1,658,423	+		LRK54_RS07655	0.86	-1.1
1,658,423	+		LRK54_RS07655	0.86	-0.2
1,658,423	+		LRK54_RS07655	0.86	-0.2
1,658,423	+		LRK54_RS07655	0.86	-0.4
1,658,423	+		LRK54_RS07655	0.86	-0.2
1,658,423	+		LRK54_RS07655	0.86	-0.1
1,658,424	-		LRK54_RS07655	0.86	-0.1
1,658,424	-		LRK54_RS07655	0.86	+1.6
1,658,424	-		LRK54_RS07655	0.86	+0.4
1,658,424	-		LRK54_RS07655	0.86	-0.6
1,658,424	-		LRK54_RS07655	0.86	-0.2
1,658,424	-		LRK54_RS07655	0.86	+0.1
1,658,424	-		LRK54_RS07655	0.86	+0.5
1,658,424	-		LRK54_RS07655	0.86	-0.5
1,658,424	-		LRK54_RS07655	0.86	-0.1
1,658,424	-		LRK54_RS07655	0.86	-0.5
1,658,424	-		LRK54_RS07655	0.86	-0.5
1,658,424	-		LRK54_RS07655	0.86	+0.6
1,658,424	-		LRK54_RS07655	0.86	-1.5
1,658,424	-		LRK54_RS07655	0.86	-1.6
1,658,424	-		LRK54_RS07655	0.86	-0.2
1,658,424	-		LRK54_RS07655	0.86	-0.3
1,658,424	-		LRK54_RS07655	0.86	-1.0
1,658,424	-		LRK54_RS07655	0.86	+0.7
1,658,424	-		LRK54_RS07655	0.86	+0.3
1,658,424	-		LRK54_RS07655	0.86	+0.6
1,658,424	-		LRK54_RS07655	0.86	+0.3
1,658,424	-		LRK54_RS07655	0.86	+0.3
1,658,424	-		LRK54_RS07655	0.86	-0.3
1,658,424	-		LRK54_RS07655	0.86	-0.2
1,658,424	-		LRK54_RS07655	0.86	-1.0
1,658,424	-		LRK54_RS07655	0.86	-0.4
1,658,424	-		LRK54_RS07655	0.86	-0.3
1,658,424	-		LRK54_RS07655	0.86	-0.4
1,658,424	-		LRK54_RS07655	0.86	+1.3
1,658,424	-		LRK54_RS07655	0.86	+0.4
1,658,424	-		LRK54_RS07655	0.86	-0.4
1,658,424	-		LRK54_RS07655	0.86	-0.7
1,658,447	+		LRK54_RS07655	0.87	-0.4
1,658,447	+		LRK54_RS07655	0.87	+0.4
1,658,448	-		LRK54_RS07655	0.87	+0.2
1,658,448	-		LRK54_RS07655	0.87	+0.2
1,658,448	-		LRK54_RS07655	0.87	-0.4
1,658,448	-		LRK54_RS07655	0.87	-0.3
1,658,448	-		LRK54_RS07655	0.87	-2.6
1,658,462	+		LRK54_RS07655	0.88	+0.4
1,658,462	+		LRK54_RS07655	0.88	-0.3
1,658,462	+		LRK54_RS07655	0.88	+0.2
1,658,462	+		LRK54_RS07655	0.88	-0.9
1,658,462	+		LRK54_RS07655	0.88	-0.8
1,658,462	+		LRK54_RS07655	0.88	-0.3
1,658,462	+		LRK54_RS07655	0.88	+0.2
1,658,462	+		LRK54_RS07655	0.88	+0.2
1,658,462	+		LRK54_RS07655	0.88	-0.2
1,658,462	+		LRK54_RS07655	0.88	+2.0
1,658,462	+		LRK54_RS07655	0.88	+0.2
1,658,462	+		LRK54_RS07655	0.88	+1.6
1,658,462	+		LRK54_RS07655	0.88	-1.5
1,658,462	+		LRK54_RS07655	0.88	-1.1
1,658,463	-		LRK54_RS07655	0.88	-0.6
1,658,463	-		LRK54_RS07655	0.88	+0.2
1,658,463	-		LRK54_RS07655	0.88	-2.0
1,658,463	-		LRK54_RS07655	0.88	-1.5
1,658,463	-		LRK54_RS07655	0.88	+1.1
1,658,463	-		LRK54_RS07655	0.88	-0.5
1,658,463	-		LRK54_RS07655	0.88	-0.8
1,658,464	+		LRK54_RS07655	0.88	-0.8
1,658,464	+		LRK54_RS07655	0.88	-1.2
1,658,464	+		LRK54_RS07655	0.88	-0.2
1,658,464	+		LRK54_RS07655	0.88	-0.5
1,658,464	+		LRK54_RS07655	0.88	+0.0
1,658,464	+		LRK54_RS07655	0.88	+0.0
1,658,464	+		LRK54_RS07655	0.88	+0.5
1,658,464	+		LRK54_RS07655	0.88	+0.3
1,658,464	+		LRK54_RS07655	0.88	-0.3
1,658,464	+		LRK54_RS07655	0.88	+2.6
1,658,464	+		LRK54_RS07655	0.88	+0.2
1,658,464	+		LRK54_RS07655	0.88	-1.8
1,658,464	+		LRK54_RS07655	0.88	-0.6
1,658,464	+		LRK54_RS07655	0.88	+0.6
1,658,464	+		LRK54_RS07655	0.88	+0.4
1,658,464	+		LRK54_RS07655	0.88	-3.3
1,658,464	+		LRK54_RS07655	0.88	-0.2
1,658,464	+		LRK54_RS07655	0.88	-1.3
1,658,464	+		LRK54_RS07655	0.88	-0.9
1,658,464	+		LRK54_RS07655	0.88	+2.0
1,658,465	-		LRK54_RS07655	0.88	-1.5
1,658,465	-		LRK54_RS07655	0.88	-0.8
1,658,465	-		LRK54_RS07655	0.88	+0.8
1,658,465	-		LRK54_RS07655	0.88	+0.1
1,658,465	-		LRK54_RS07655	0.88	-0.1
1,658,465	-		LRK54_RS07655	0.88	+0.1
1,658,465	-		LRK54_RS07655	0.88	-0.8
1,658,465	-		LRK54_RS07655	0.88	+0.8
1,658,465	-		LRK54_RS07655	0.88	+0.4
1,658,465	-		LRK54_RS07655	0.88	-0.3
1,658,465	-		LRK54_RS07655	0.88	-0.2
1,658,465	-		LRK54_RS07655	0.88	+0.4
1,658,465	-		LRK54_RS07655	0.88	+2.8
1,658,465	-		LRK54_RS07655	0.88	-0.1
1,658,465	-		LRK54_RS07655	0.88	+0.2
1,658,465	-		LRK54_RS07655	0.88	+0.1
1,658,465	-		LRK54_RS07655	0.88	+0.3
1,658,465	-		LRK54_RS07655	0.88	+0.1
1,658,465	-		LRK54_RS07655	0.88	-0.5
1,658,465	-		LRK54_RS07655	0.88	+0.1
1,658,465	-		LRK54_RS07655	0.88	+1.1
1,658,465	-		LRK54_RS07655	0.88	-0.2
1,658,465	-		LRK54_RS07655	0.88	+0.8
1,658,707	+				+0.8
1,658,708	-				-2.1
1,658,708	-				+0.0
1,658,805	+				-1.8
1,658,805	+				-0.6
1,658,805	+				-0.8
1,658,806	-				+0.6
1,658,806	-				-1.0
1,658,806	-				+1.0
1,658,806	-				+0.4
1,658,806	-				+0.2
1,658,806	-				+1.0
1,658,813	+				-0.3
1,658,813	+				+0.2
1,658,813	+				-0.3
1,658,813	+				-0.6
1,658,813	+				-0.1
1,658,813	+				+0.8
1,658,813	+				+0.0
1,658,813	+				-0.1
1,658,813	+				-1.0
1,658,813	+				-0.0
1,658,813	+				-0.2
1,658,813	+				+0.8
1,658,813	+				+0.2
1,658,813	+				-0.8
1,658,813	+				-1.2
1,658,814	-				-1.6
1,658,814	-				+2.4
1,658,814	-				-0.6
1,658,814	-				-0.1
1,658,814	-				-0.0
1,658,814	-				+0.3
1,658,814	-				-0.3
1,658,814	-				+2.2
1,658,814	-				-0.5
1,658,814	-				-0.4
1,658,814	-				+1.2
1,658,814	-				+0.2
1,658,814	-				-1.2
1,658,814	-				+0.0
1,658,814	-				+0.4
1,658,942	+				+0.2
1,658,942	+				-0.4
1,658,942	+				+0.4
1,658,942	+				+0.1
1,658,942	+				+2.0
1,658,942	+				+2.4
1,658,942	+				+0.1
1,658,943	-				+0.3
1,658,943	-				+0.6
1,658,943	-				-1.4
1,658,943	-				-0.1
1,658,943	-				+0.3
1,658,943	-				-1.2
1,658,943	-				+1.8
1,658,943	-				+0.1
1,658,943	-				-0.5
1,658,943	-				+0.1
1,658,943	-				+0.7
1,658,943	-				+0.7
1,658,984	+				+0.1
1,658,985	-				+0.3
1,659,101	+		LRK54_RS07660	0.11	-0.5
1,659,101	+		LRK54_RS07660	0.11	+1.1
1,659,101	+		LRK54_RS07660	0.11	-1.9
1,659,101	+		LRK54_RS07660	0.11	+0.5
1,659,101	+		LRK54_RS07660	0.11	+0.1
1,659,101	+		LRK54_RS07660	0.11	-0.2
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1,661,467	-				-0.3
1,661,467	-				+0.5
1,661,467	-				+1.3
1,661,467	-				-0.4
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1,661,467	-				-0.4
1,661,467	-				+0.8
1,661,467	-				+0.2
1,661,673	+		LRK54_RS07665	0.10	+0.8
1,661,673	+		LRK54_RS07665	0.10	+0.3
1,661,673	+		LRK54_RS07665	0.10	-1.5
1,661,673	+		LRK54_RS07665	0.10	-0.4
1,661,673	+		LRK54_RS07665	0.10	-0.8
1,661,673	+		LRK54_RS07665	0.10	-0.1
1,661,673	+		LRK54_RS07665	0.10	-1.5
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1,661,674	-		LRK54_RS07665	0.10	+0.1
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1,661,899	-		LRK54_RS07665	0.15	-2.2
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