Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS07605

Experiment: R2A with SpecU metal mix 1 X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with SpecU metal mix 1 X
1,635,996	+				+1.4
1,636,057	+				+0.6
1,636,057	+				+0.4
1,636,057	+				+1.4
1,636,057	+				+0.3
1,636,057	+				+0.2
1,636,057	+				-0.2
1,636,057	+				-0.3
1,636,057	+				+0.2
1,636,057	+				+1.0
1,636,057	+				-0.1
1,636,058	-				+1.5
1,636,058	-				-0.1
1,636,058	-				+0.8
1,636,058	-				+0.8
1,636,058	-				-1.2
1,636,058	-				-1.2
1,636,058	-				+1.6
1,636,058	-				-0.8
1,636,058	-				-1.4
1,636,058	-				+1.0
1,636,059	+				+0.3
1,636,059	+				+1.1
1,636,059	+				+1.3
1,636,059	+				+3.6
1,636,059	+				+0.8
1,636,112	+				+0.0
1,636,112	+				+0.8
1,636,112	+				+1.0
1,636,112	+				+0.4
1,636,112	+				-0.4
1,636,112	+				+1.8
1,636,113	-				-0.3
1,636,113	-				-0.8
1,636,113	-				+0.2
1,636,113	-				+0.5
1,636,113	-				-1.4
1,636,113	-				+0.2
1,636,113	-				-0.5
1,636,123	+				+0.6
1,636,124	-				-2.8
1,636,124	-				-0.8
1,636,124	-				-0.1
1,636,139	+				+0.8
1,636,139	+				+1.1
1,636,266	+		LRK54_RS07600	0.11	-1.0
1,636,266	+		LRK54_RS07600	0.11	-1.5
1,636,266	+		LRK54_RS07600	0.11	-2.0
1,636,267	-		LRK54_RS07600	0.11	-1.8
1,636,267	-		LRK54_RS07600	0.11	-0.3
1,636,267	-		LRK54_RS07600	0.11	-1.2
1,636,267	-		LRK54_RS07600	0.11	-2.0
1,636,267	-		LRK54_RS07600	0.11	-0.5
1,636,267	-		LRK54_RS07600	0.11	-0.0
1,636,267	-		LRK54_RS07600	0.11	-0.2
1,636,267	-		LRK54_RS07600	0.11	-1.4
1,636,267	-		LRK54_RS07600	0.11	-1.6
1,636,268	+		LRK54_RS07600	0.11	-0.7
1,636,268	+		LRK54_RS07600	0.11	-2.8
1,636,268	+		LRK54_RS07600	0.11	+0.8
1,636,269	-		LRK54_RS07600	0.11	-0.3
1,636,269	-		LRK54_RS07600	0.11	-0.9
1,636,269	-		LRK54_RS07600	0.11	-1.5
1,636,269	-		LRK54_RS07600	0.11	-0.8
1,636,269	-		LRK54_RS07600	0.11	-0.9
1,636,485	+		LRK54_RS07600	0.44	-1.5
1,636,486	-		LRK54_RS07600	0.44	-0.9
1,636,486	-		LRK54_RS07600	0.44	-0.4
1,636,486	-		LRK54_RS07600	0.44	-1.4
1,636,728	+		LRK54_RS07600	0.80	-0.5
1,636,728	+		LRK54_RS07600	0.80	-1.8
1,636,728	+		LRK54_RS07600	0.80	-0.4
1,636,728	+		LRK54_RS07600	0.80	-0.5
1,636,728	+		LRK54_RS07600	0.80	-0.2
1,636,729	-		LRK54_RS07600	0.80	-1.6
1,636,729	-		LRK54_RS07600	0.80	-2.6
1,636,833	+				-2.1
1,636,833	+				-0.4
1,636,833	+				-0.2
1,636,833	+				-1.2
1,636,834	-				-2.0
1,636,834	-				-2.5
1,636,834	-				-1.2
1,636,834	-				-1.7
1,637,144	+		LRK54_RS07605	0.20	-2.0
1,637,144	+		LRK54_RS07605	0.20	-1.2
1,637,144	+		LRK54_RS07605	0.20	-0.2
1,637,144	+		LRK54_RS07605	0.20	-1.9
1,637,144	+		LRK54_RS07605	0.20	-2.0
1,637,144	+		LRK54_RS07605	0.20	-2.3
1,637,144	+		LRK54_RS07605	0.20	-2.0
1,637,144	+		LRK54_RS07605	0.20	+0.6
1,637,144	+		LRK54_RS07605	0.20	-1.8
1,637,144	+		LRK54_RS07605	0.20	-1.5
1,637,144	+		LRK54_RS07605	0.20	-0.6
1,637,144	+		LRK54_RS07605	0.20	-1.5
1,637,144	+		LRK54_RS07605	0.20	-0.2
1,637,144	+		LRK54_RS07605	0.20	+0.7
1,637,144	+		LRK54_RS07605	0.20	-1.0
1,637,144	+		LRK54_RS07605	0.20	-1.9
1,637,144	+		LRK54_RS07605	0.20	-2.2
1,637,144	+		LRK54_RS07605	0.20	-1.2
1,637,144	+		LRK54_RS07605	0.20	-0.8
1,637,144	+		LRK54_RS07605	0.20	-0.1
1,637,145	-		LRK54_RS07605	0.20	+2.4
1,637,145	-		LRK54_RS07605	0.20	-0.6
1,637,145	-		LRK54_RS07605	0.20	-1.6
1,637,145	-		LRK54_RS07605	0.20	-1.2
1,637,145	-		LRK54_RS07605	0.20	-1.0
1,637,145	-		LRK54_RS07605	0.20	+0.2
1,637,145	-		LRK54_RS07605	0.20	-1.9
1,637,145	-		LRK54_RS07605	0.20	-0.5
1,637,145	-		LRK54_RS07605	0.20	-1.1
1,637,145	-		LRK54_RS07605	0.20	-1.8
1,637,145	-		LRK54_RS07605	0.20	-0.2
1,637,169	+		LRK54_RS07605	0.22	-0.2
1,637,169	+		LRK54_RS07605	0.22	+0.4
1,637,170	-		LRK54_RS07605	0.22	-0.5
1,637,170	-		LRK54_RS07605	0.22	-2.9
1,637,170	-		LRK54_RS07605	0.22	-0.5
1,637,273	+		LRK54_RS07605	0.30	-0.4
1,637,339	+		LRK54_RS07605	0.34	-1.3
1,637,339	+		LRK54_RS07605	0.34	-1.0
1,637,937	-		LRK54_RS07605	0.77	-1.2
1,637,937	-		LRK54_RS07605	0.77	-0.9
1,638,147	-				-0.8
1,638,221	+				-2.2
1,638,221	+				-3.1
1,638,222	-				-2.0
1,638,222	-				+0.2
1,638,240	+				-2.1
1,638,373	+				-0.2
1,638,373	+				-1.2
1,638,373	+				-0.2
1,638,373	+				+0.5
1,638,373	+				-0.4
1,638,373	+				+0.0
1,638,373	+				-0.5
1,638,373	+				+0.3
1,638,373	+				-0.2
1,638,374	-				+0.8
1,638,374	-				-0.5
1,638,374	-				-0.3
1,638,374	-				-0.1
1,638,374	-				-0.4
1,638,448	+		LRK54_RS07610	0.17	-0.4
1,638,508	+		LRK54_RS07610	0.22	+0.4
1,638,508	+		LRK54_RS07610	0.22	+0.9
1,638,508	+		LRK54_RS07610	0.22	-1.4
1,638,508	+		LRK54_RS07610	0.22	-2.2
1,638,508	+		LRK54_RS07610	0.22	+2.1
1,638,508	+		LRK54_RS07610	0.22	-0.2
1,638,508	+		LRK54_RS07610	0.22	-1.2
1,638,508	+		LRK54_RS07610	0.22	+2.1
1,638,508	+		LRK54_RS07610	0.22	+0.1
1,638,508	+		LRK54_RS07610	0.22	-0.5
1,638,508	+		LRK54_RS07610	0.22	+0.5
1,638,508	+		LRK54_RS07610	0.22	+0.0
1,638,509	-		LRK54_RS07610	0.23	+0.1
1,638,509	-		LRK54_RS07610	0.23	+0.2
1,638,509	-		LRK54_RS07610	0.23	-0.2
1,638,509	-		LRK54_RS07610	0.23	+1.3
1,638,509	-		LRK54_RS07610	0.23	+0.8
1,638,509	-		LRK54_RS07610	0.23	+0.3
1,638,509	-		LRK54_RS07610	0.23	+0.2
1,638,509	-		LRK54_RS07610	0.23	-0.2
1,638,509	-		LRK54_RS07610	0.23	-1.2
1,638,509	-		LRK54_RS07610	0.23	-2.5
1,638,594	-		LRK54_RS07610	0.31	+0.1
1,638,763	+		LRK54_RS07610	0.47	-1.5
1,638,763	+		LRK54_RS07610	0.47	+0.5
1,638,763	+		LRK54_RS07610	0.47	-0.7
1,638,763	+		LRK54_RS07610	0.47	-0.0
1,638,763	+		LRK54_RS07610	0.47	-0.0
1,638,763	+		LRK54_RS07610	0.47	-0.1
1,638,763	+		LRK54_RS07610	0.47	+0.3
1,638,764	-		LRK54_RS07610	0.47	+0.9
1,638,764	-		LRK54_RS07610	0.47	-1.5
1,638,764	-		LRK54_RS07610	0.47	-0.8
1,638,764	-		LRK54_RS07610	0.47	-1.1
1,638,764	-		LRK54_RS07610	0.47	+0.2
1,638,764	-		LRK54_RS07610	0.47	+2.4
1,638,764	-		LRK54_RS07610	0.47	+0.2
1,638,764	-		LRK54_RS07610	0.47	-0.6
1,638,764	-		LRK54_RS07610	0.47	+0.2
1,638,764	-		LRK54_RS07610	0.47	-0.1
1,638,764	-		LRK54_RS07610	0.47	-0.5
1,638,764	-		LRK54_RS07610	0.47	-1.1
1,638,764	-		LRK54_RS07610	0.47	-0.0
1,638,764	-		LRK54_RS07610	0.47	+0.5
1,638,910	+		LRK54_RS07610	0.61	-0.5
1,638,910	+		LRK54_RS07610	0.61	-0.4
1,638,910	+		LRK54_RS07610	0.61	-1.5
1,638,911	-		LRK54_RS07610	0.61	+0.1
1,638,911	-		LRK54_RS07610	0.61	+0.1
1,638,911	-		LRK54_RS07610	0.61	+0.8
1,639,168	+		LRK54_RS07610	0.86	-1.6
1,639,168	+		LRK54_RS07610	0.86	-2.6
1,639,168	+		LRK54_RS07610	0.86	+1.4
1,639,168	+		LRK54_RS07610	0.86	-0.3
1,639,168	+		LRK54_RS07610	0.86	-0.6
1,639,169	-		LRK54_RS07610	0.86	-0.3
1,639,169	-		LRK54_RS07610	0.86	+0.1
1,639,169	-		LRK54_RS07610	0.86	-0.6
1,639,169	-		LRK54_RS07610	0.86	-0.1