Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS07085

Experiment: R2A with SpecU metal mix 1 X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with SpecU metal mix 1 X
1,516,991	+				-0.8
1,516,991	+				-2.6
1,516,991	+				-2.5
1,516,991	+				-2.0
1,516,991	+				-0.8
1,517,359	+				-0.3
1,517,359	+				+0.3
1,517,359	+				+0.0
1,517,359	+				-0.5
1,517,360	-				-0.1
1,517,507	+		LRK54_RS07080	0.66	-3.0
1,517,507	+		LRK54_RS07080	0.66	-1.5
1,517,507	+		LRK54_RS07080	0.66	-0.5
1,517,507	+		LRK54_RS07080	0.66	+0.8
1,517,507	+		LRK54_RS07080	0.66	-2.3
1,517,507	+		LRK54_RS07080	0.66	-4.5
1,517,507	+		LRK54_RS07080	0.66	-0.6
1,517,507	+		LRK54_RS07080	0.66	-2.5
1,517,507	+		LRK54_RS07080	0.66	-2.6
1,517,507	+		LRK54_RS07080	0.66	-0.2
1,517,507	+		LRK54_RS07080	0.66	-1.2
1,517,507	+		LRK54_RS07080	0.66	-2.5
1,517,507	+		LRK54_RS07080	0.66	-2.8
1,517,507	+		LRK54_RS07080	0.66	-0.2
1,517,507	+		LRK54_RS07080	0.66	-3.0
1,517,507	+		LRK54_RS07080	0.66	-1.7
1,517,507	+		LRK54_RS07080	0.66	-1.2
1,517,507	+		LRK54_RS07080	0.66	-2.3
1,517,507	+		LRK54_RS07080	0.66	-2.0
1,517,507	+		LRK54_RS07080	0.66	-1.0
1,517,507	+		LRK54_RS07080	0.66	-1.5
1,517,507	+		LRK54_RS07080	0.66	-0.8
1,517,507	+		LRK54_RS07080	0.66	-2.2
1,517,507	+		LRK54_RS07080	0.66	-2.5
1,517,507	+		LRK54_RS07080	0.66	-2.0
1,517,507	+		LRK54_RS07080	0.66	-3.7
1,517,507	+		LRK54_RS07080	0.66	-1.5
1,517,507	+		LRK54_RS07080	0.66	-1.2
1,517,508	-		LRK54_RS07080	0.66	-0.2
1,517,508	-		LRK54_RS07080	0.66	+3.1
1,517,508	-		LRK54_RS07080	0.66	-0.2
1,517,508	-		LRK54_RS07080	0.66	+2.3
1,517,508	-		LRK54_RS07080	0.66	-0.0
1,517,508	-		LRK54_RS07080	0.66	+0.5
1,517,508	-		LRK54_RS07080	0.66	+1.7
1,517,508	-		LRK54_RS07080	0.66	-1.0
1,517,508	-		LRK54_RS07080	0.66	+0.4
1,517,508	-		LRK54_RS07080	0.66	+0.2
1,517,508	-		LRK54_RS07080	0.66	+0.9
1,517,508	-		LRK54_RS07080	0.66	-0.4
1,517,508	-		LRK54_RS07080	0.66	-1.0
1,517,508	-		LRK54_RS07080	0.66	-0.2
1,517,508	-		LRK54_RS07080	0.66	+2.8
1,517,508	-		LRK54_RS07080	0.66	+1.2
1,517,508	-		LRK54_RS07080	0.66	+0.7
1,517,508	-		LRK54_RS07080	0.66	-1.4
1,517,508	-		LRK54_RS07080	0.66	+0.8
1,517,508	-		LRK54_RS07080	0.66	+0.2
1,517,508	-		LRK54_RS07080	0.66	-0.0
1,517,508	-		LRK54_RS07080	0.66	+0.7
1,517,508	-		LRK54_RS07080	0.66	-0.4
1,517,508	-		LRK54_RS07080	0.66	-1.4
1,517,508	-		LRK54_RS07080	0.66	-0.2
1,517,508	-		LRK54_RS07080	0.66	-0.6
1,517,508	-		LRK54_RS07080	0.66	-0.7
1,517,508	-		LRK54_RS07080	0.66	+1.0
1,517,589	+				+1.8
1,517,589	+				-3.6
1,517,589	+				-0.8
1,517,589	+				-2.2
1,517,589	+				-1.5
1,517,589	+				-0.2
1,517,589	+				-2.4
1,517,589	+				-0.2
1,517,590	-				+0.6
1,517,590	-				+0.0
1,517,590	-				+0.1
1,517,590	-				+0.8
1,517,590	-				-0.2
1,517,646	+				-2.8
1,517,647	-				-3.9
1,517,701	+				-1.5
1,517,701	+				-1.5
1,517,701	+				-2.6
1,517,701	+				-3.8
1,517,701	+				-3.4
1,517,702	-				-0.8
1,517,702	-				-0.6
1,517,702	-				-1.1
1,517,702	-				-1.3
1,517,702	-				-0.4
1,517,702	-				+0.3
1,517,702	-				+0.3
1,517,702	-				+0.5
1,517,702	-				-0.3
1,517,702	-				+0.5
1,517,702	-				+0.2
1,517,746	+				-2.8
1,517,746	+				-1.2
1,517,746	+				-3.0
1,517,747	-				+0.7
1,517,751	+				+1.1
1,517,752	-				+1.0
1,517,752	-				-0.8
1,517,752	-				-0.9
1,517,761	+				-1.2
1,517,761	+				-1.5
1,517,761	+				-3.6
1,517,761	+				-4.5
1,517,761	+				-1.1
1,517,761	+				-1.2
1,517,761	+				+0.8
1,517,761	+				-1.7
1,517,761	+				-2.8
1,517,761	+				-1.5
1,517,761	+				-0.8
1,517,761	+				-3.3
1,517,761	+				-2.4
1,517,761	+				-2.8
1,517,761	+				-2.6
1,517,761	+				-1.4
1,517,762	-				+0.0
1,517,762	-				-0.6
1,517,762	-				-1.4
1,517,762	-				+1.4
1,517,762	-				-2.9
1,517,762	-				-0.9
1,517,762	-				-1.8
1,517,762	-				-0.4
1,517,762	-				-0.2
1,517,762	-				-0.5
1,517,762	-				-0.8
1,517,762	-				-2.2
1,517,762	-				+0.0
1,517,762	-				+0.2
1,517,762	-				-2.6
1,517,762	-				-1.3
1,517,772	+				+0.8
1,517,773	-				+1.4
1,517,975	+		LRK54_RS07085	0.10	+0.2
1,517,975	+		LRK54_RS07085	0.10	-1.8
1,517,975	+		LRK54_RS07085	0.10	-3.2
1,517,976	-		LRK54_RS07085	0.10	-0.2
1,517,976	-		LRK54_RS07085	0.10	-0.6
1,517,976	-		LRK54_RS07085	0.10	-1.5
1,517,976	-		LRK54_RS07085	0.10	-1.2
1,517,976	-		LRK54_RS07085	0.10	-1.8
1,517,976	-		LRK54_RS07085	0.10	-0.2
1,517,976	-		LRK54_RS07085	0.10	-1.2
1,517,987	+		LRK54_RS07085	0.11	-1.2
1,517,987	+		LRK54_RS07085	0.11	-1.4
1,517,987	+		LRK54_RS07085	0.11	-2.8
1,517,987	+		LRK54_RS07085	0.11	-0.2
1,517,987	+		LRK54_RS07085	0.11	-1.3
1,517,987	+		LRK54_RS07085	0.11	-2.6
1,517,988	-		LRK54_RS07085	0.12	-0.4
1,517,988	-		LRK54_RS07085	0.12	-1.6
1,517,988	-		LRK54_RS07085	0.12	-1.2
1,517,988	-		LRK54_RS07085	0.12	-0.5
1,517,988	-		LRK54_RS07085	0.12	+0.8
1,517,988	-		LRK54_RS07085	0.12	-1.2
1,517,988	-		LRK54_RS07085	0.12	-2.6
1,517,988	-		LRK54_RS07085	0.12	-1.2
1,517,988	-		LRK54_RS07085	0.12	-3.6
1,518,008	+		LRK54_RS07085	0.14	-1.2
1,518,008	+		LRK54_RS07085	0.14	-3.5
1,518,008	+		LRK54_RS07085	0.14	+0.8
1,518,008	+		LRK54_RS07085	0.14	-1.4
1,518,008	+		LRK54_RS07085	0.14	-1.2
1,518,008	+		LRK54_RS07085	0.14	-0.8
1,518,008	+		LRK54_RS07085	0.14	+0.2
1,518,009	-		LRK54_RS07085	0.14	-0.0
1,518,009	-		LRK54_RS07085	0.14	-0.8
1,518,009	-		LRK54_RS07085	0.14	+0.3
1,518,009	-		LRK54_RS07085	0.14	-1.8
1,518,027	+		LRK54_RS07085	0.16	-1.2
1,518,028	-		LRK54_RS07085	0.16	-3.4
1,518,028	-		LRK54_RS07085	0.16	-1.1
1,518,028	-		LRK54_RS07085	0.16	-3.3
1,518,044	+		LRK54_RS07085	0.18	-1.2
1,518,044	+		LRK54_RS07085	0.18	+0.2
1,518,044	+		LRK54_RS07085	0.18	+0.1
1,518,044	+		LRK54_RS07085	0.18	-2.1
1,518,044	+		LRK54_RS07085	0.18	-0.2
1,518,045	-		LRK54_RS07085	0.18	-1.2
1,518,045	-		LRK54_RS07085	0.18	-0.2
1,518,045	-		LRK54_RS07085	0.18	-0.5
1,518,045	-		LRK54_RS07085	0.18	-1.9
1,518,045	-		LRK54_RS07085	0.18	-2.1
1,518,047	+		LRK54_RS07085	0.18	+0.8
1,518,047	+		LRK54_RS07085	0.18	-1.3
1,518,047	+		LRK54_RS07085	0.18	+3.4
1,518,047	+		LRK54_RS07085	0.18	-1.1
1,518,047	+		LRK54_RS07085	0.18	-1.8
1,518,047	+		LRK54_RS07085	0.18	-0.9
1,518,047	+		LRK54_RS07085	0.18	-2.1
1,518,047	+		LRK54_RS07085	0.18	-1.6
1,518,047	+		LRK54_RS07085	0.18	-1.5
1,518,047	+		LRK54_RS07085	0.18	-0.8
1,518,047	+		LRK54_RS07085	0.18	-0.5
1,518,047	+		LRK54_RS07085	0.18	-1.2
1,518,047	+		LRK54_RS07085	0.18	-1.6
1,518,047	+		LRK54_RS07085	0.18	-1.1
1,518,047	+		LRK54_RS07085	0.18	-1.2
1,518,047	+		LRK54_RS07085	0.18	-0.2
1,518,048	-		LRK54_RS07085	0.18	-0.2
1,518,048	-		LRK54_RS07085	0.18	+0.2
1,518,048	-		LRK54_RS07085	0.18	-2.1
1,518,048	-		LRK54_RS07085	0.18	-0.6
1,518,048	-		LRK54_RS07085	0.18	-0.6
1,518,048	-		LRK54_RS07085	0.18	-0.8
1,518,048	-		LRK54_RS07085	0.18	-2.8
1,518,048	-		LRK54_RS07085	0.18	-2.0
1,518,048	-		LRK54_RS07085	0.18	-1.5
1,518,048	-		LRK54_RS07085	0.18	-0.5
1,518,048	-		LRK54_RS07085	0.18	-1.1
1,518,048	-		LRK54_RS07085	0.18	-2.4
1,518,048	-		LRK54_RS07085	0.18	-1.4
1,518,086	+		LRK54_RS07085	0.22	-1.2
1,518,086	+		LRK54_RS07085	0.22	-1.1
1,518,086	+		LRK54_RS07085	0.22	-0.2
1,518,086	+		LRK54_RS07085	0.22	-0.2
1,518,086	+		LRK54_RS07085	0.22	-2.6
1,518,086	+		LRK54_RS07085	0.22	-1.9
1,518,086	+		LRK54_RS07085	0.22	-1.6
1,518,087	-		LRK54_RS07085	0.22	-0.4
1,518,087	-		LRK54_RS07085	0.22	-0.6
1,518,087	-		LRK54_RS07085	0.22	-2.0
1,518,087	-		LRK54_RS07085	0.22	+0.1
1,518,087	-		LRK54_RS07085	0.22	+0.3
1,518,149	+		LRK54_RS07085	0.29	+0.5
1,518,149	+		LRK54_RS07085	0.29	-2.1
1,518,149	+		LRK54_RS07085	0.29	+0.2
1,518,149	+		LRK54_RS07085	0.29	-1.0
1,518,149	+		LRK54_RS07085	0.29	-1.0
1,518,149	+		LRK54_RS07085	0.29	-2.2
1,518,149	+		LRK54_RS07085	0.29	+2.4
1,518,149	+		LRK54_RS07085	0.29	-0.4
1,518,149	+		LRK54_RS07085	0.29	-1.8
1,518,149	+		LRK54_RS07085	0.29	-1.6
1,518,149	+		LRK54_RS07085	0.29	-0.2
1,518,150	-		LRK54_RS07085	0.29	-0.2
1,518,150	-		LRK54_RS07085	0.29	-0.3
1,518,150	-		LRK54_RS07085	0.29	-0.8
1,518,150	-		LRK54_RS07085	0.29	-1.8
1,518,150	-		LRK54_RS07085	0.29	-1.4
1,518,150	-		LRK54_RS07085	0.29	-0.8
1,518,150	-		LRK54_RS07085	0.29	-2.8
1,518,150	-		LRK54_RS07085	0.29	-1.2
1,518,150	-		LRK54_RS07085	0.29	-1.7
1,518,150	-		LRK54_RS07085	0.29	+0.1
1,518,150	-		LRK54_RS07085	0.29	-0.3
1,518,150	-		LRK54_RS07085	0.29	+0.1
1,518,150	-		LRK54_RS07085	0.29	-1.3
1,518,150	-		LRK54_RS07085	0.29	-1.9
1,518,150	-		LRK54_RS07085	0.29	-1.2
1,518,150	-		LRK54_RS07085	0.29	-2.0
1,518,150	-		LRK54_RS07085	0.29	-2.4
1,518,150	-		LRK54_RS07085	0.29	-0.5
1,518,221	+		LRK54_RS07085	0.37	-1.4
1,518,221	+		LRK54_RS07085	0.37	-1.8
1,518,221	+		LRK54_RS07085	0.37	-1.2
1,518,222	-		LRK54_RS07085	0.37	-2.0
1,518,222	-		LRK54_RS07085	0.37	+0.0
1,518,222	-		LRK54_RS07085	0.37	-0.8
1,518,222	-		LRK54_RS07085	0.37	-1.3
1,518,222	-		LRK54_RS07085	0.37	-0.2
1,518,222	-		LRK54_RS07085	0.37	-1.5
1,518,222	-		LRK54_RS07085	0.37	-1.5
1,518,222	-		LRK54_RS07085	0.37	-2.4
1,518,222	-		LRK54_RS07085	0.37	-1.8
1,518,302	+		LRK54_RS07085	0.46	-0.9
1,518,303	-		LRK54_RS07085	0.46	-2.4
1,518,411	+		LRK54_RS07085	0.58	-1.1
1,518,412	-		LRK54_RS07085	0.58	-0.9
1,518,412	-		LRK54_RS07085	0.58	-0.6
1,518,412	-		LRK54_RS07085	0.58	+0.2
1,518,413	+		LRK54_RS07085	0.59	-2.1
1,518,413	+		LRK54_RS07085	0.59	+0.1
1,518,413	+		LRK54_RS07085	0.59	-2.2
1,518,413	+		LRK54_RS07085	0.59	-3.0
1,518,413	+		LRK54_RS07085	0.59	-1.5
1,518,413	+		LRK54_RS07085	0.59	+0.4
1,518,413	+		LRK54_RS07085	0.59	-1.8
1,518,413	+		LRK54_RS07085	0.59	-0.5
1,518,413	+		LRK54_RS07085	0.59	-1.6
1,518,413	+		LRK54_RS07085	0.59	-2.0
1,518,413	+		LRK54_RS07085	0.59	+0.2
1,518,413	+		LRK54_RS07085	0.59	-0.2
1,518,413	+		LRK54_RS07085	0.59	-0.2
1,518,413	+		LRK54_RS07085	0.59	-0.8
1,518,413	+		LRK54_RS07085	0.59	-0.8
1,518,413	+		LRK54_RS07085	0.59	+0.8
1,518,413	+		LRK54_RS07085	0.59	-2.8
1,518,413	+		LRK54_RS07085	0.59	-0.2
1,518,413	+		LRK54_RS07085	0.59	+0.6
1,518,413	+		LRK54_RS07085	0.59	-0.3
1,518,413	+		LRK54_RS07085	0.59	-1.2
1,518,413	+		LRK54_RS07085	0.59	-0.4
1,518,413	+		LRK54_RS07085	0.59	-0.8
1,518,413	+		LRK54_RS07085	0.59	+0.8
1,518,413	+		LRK54_RS07085	0.59	-1.5
1,518,413	+		LRK54_RS07085	0.59	-1.3
1,518,413	+		LRK54_RS07085	0.59	+0.2
1,518,413	+		LRK54_RS07085	0.59	+0.8
1,518,413	+		LRK54_RS07085	0.59	-0.8
1,518,413	+		LRK54_RS07085	0.59	-2.0
1,518,413	+		LRK54_RS07085	0.59	-1.5
1,518,413	+		LRK54_RS07085	0.59	-0.6
1,518,413	+		LRK54_RS07085	0.59	+1.4
1,518,413	+		LRK54_RS07085	0.59	-1.2
1,518,413	+		LRK54_RS07085	0.59	-1.2
1,518,413	+		LRK54_RS07085	0.59	-0.2
1,518,413	+		LRK54_RS07085	0.59	-0.8
1,518,414	-		LRK54_RS07085	0.59	-0.9
1,518,414	-		LRK54_RS07085	0.59	-1.4
1,518,414	-		LRK54_RS07085	0.59	-0.2
1,518,414	-		LRK54_RS07085	0.59	-1.1
1,518,414	-		LRK54_RS07085	0.59	-1.4
1,518,414	-		LRK54_RS07085	0.59	-0.6
1,518,414	-		LRK54_RS07085	0.59	-0.0
1,518,414	-		LRK54_RS07085	0.59	-0.6
1,518,414	-		LRK54_RS07085	0.59	-0.8
1,518,414	-		LRK54_RS07085	0.59	-0.6
1,518,414	-		LRK54_RS07085	0.59	-2.0
1,518,414	-		LRK54_RS07085	0.59	-0.2
1,518,414	-		LRK54_RS07085	0.59	-0.9
1,518,414	-		LRK54_RS07085	0.59	-1.9
1,518,414	-		LRK54_RS07085	0.59	-0.6
1,518,414	-		LRK54_RS07085	0.59	-1.8
1,518,414	-		LRK54_RS07085	0.59	-0.9
1,518,414	-		LRK54_RS07085	0.59	-0.6
1,518,414	-		LRK54_RS07085	0.59	-0.7
1,518,414	-		LRK54_RS07085	0.59	-1.0
1,518,414	-		LRK54_RS07085	0.59	+0.2
1,518,414	-		LRK54_RS07085	0.59	-0.3
1,518,414	-		LRK54_RS07085	0.59	-1.5
1,518,414	-		LRK54_RS07085	0.59	-1.8
1,518,414	-		LRK54_RS07085	0.59	+0.8
1,518,414	-		LRK54_RS07085	0.59	-1.8
1,518,414	-		LRK54_RS07085	0.59	-1.8
1,518,414	-		LRK54_RS07085	0.59	-1.2
1,518,414	-		LRK54_RS07085	0.59	-0.5
1,518,414	-		LRK54_RS07085	0.59	-0.8
1,518,414	-		LRK54_RS07085	0.59	-0.0
1,518,414	-		LRK54_RS07085	0.59	-1.5
1,518,414	-		LRK54_RS07085	0.59	+0.8
1,518,414	-		LRK54_RS07085	0.59	-0.7
1,518,414	-		LRK54_RS07085	0.59	-1.5
1,518,414	-		LRK54_RS07085	0.59	-2.9
1,518,425	+		LRK54_RS07085	0.60	-1.5
1,518,506	-		LRK54_RS07085	0.69	-0.4
1,518,506	-		LRK54_RS07085	0.69	-1.3
1,518,506	-		LRK54_RS07085	0.69	-1.0
1,518,767	+				-0.8
1,518,767	+				-0.9
1,518,767	+				-0.7
1,518,767	+				-2.0
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1,518,767	+				-1.4
1,518,768	-				-1.5
1,518,768	-				-2.1
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1,518,768	-				-1.1
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1,518,768	-				-1.5
1,518,768	-				-1.3
1,518,768	-				-0.9
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1,518,924	+		LRK54_RS07090	0.12	-0.8
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1,518,924	+		LRK54_RS07090	0.12	-3.1
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1,519,755	+		LRK54_RS07090	0.82	-0.6
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1,519,755	+		LRK54_RS07090	0.82	-1.4
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