Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS06515

Experiment: R2A with SpecU metal mix 1 X

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntLRK54_RS06510 and LRK54_RS06515 are separated by 16 nucleotidesLRK54_RS06515 and LRK54_RS06520 overlap by 4 nucleotidesLRK54_RS06520 and LRK54_RS06525 are separated by 12 nucleotides LRK54_RS06510: LRK54_RS06510 - penicillin-binding protein 2, at 1,399,098 to 1,401,104 _RS06510 LRK54_RS06515: LRK54_RS06515 - rod shape-determining protein MreD, at 1,401,121 to 1,401,606 _RS06515 LRK54_RS06520: LRK54_RS06520 - rod shape-determining protein MreC, at 1,401,603 to 1,402,553 _RS06520 LRK54_RS06525: LRK54_RS06525 - rod shape-determining protein, at 1,402,566 to 1,403,612 _RS06525 Position (kb) 1401 1402Strain fitness (log2 ratio) -2 -1 0 1 2at 1401.178 kb on + strand, within LRK54_RS06515at 1401.178 kb on + strand, within LRK54_RS06515at 1401.179 kb on - strand, within LRK54_RS06515at 1401.179 kb on - strand, within LRK54_RS06515at 1401.179 kb on - strand, within LRK54_RS06515at 1401.179 kb on - strand, within LRK54_RS06515at 1401.179 kb on - strand, within LRK54_RS06515at 1401.179 kb on - strand, within LRK54_RS06515at 1401.179 kb on - strand, within LRK54_RS06515at 1401.179 kb on - strand, within LRK54_RS06515at 1401.179 kb on - strand, within LRK54_RS06515at 1401.179 kb on - strand, within LRK54_RS06515at 1401.179 kb on - strand, within LRK54_RS06515at 1401.179 kb on - strand, within LRK54_RS06515at 1402.568 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction R2A with SpecU metal mix 1 X
remove
1,401,178 + LRK54_RS06515 0.12 -1.1
1,401,178 + LRK54_RS06515 0.12 -2.5
1,401,179 - LRK54_RS06515 0.12 -0.4
1,401,179 - LRK54_RS06515 0.12 -1.2
1,401,179 - LRK54_RS06515 0.12 -0.2
1,401,179 - LRK54_RS06515 0.12 -1.5
1,401,179 - LRK54_RS06515 0.12 -2.0
1,401,179 - LRK54_RS06515 0.12 +1.8
1,401,179 - LRK54_RS06515 0.12 -0.8
1,401,179 - LRK54_RS06515 0.12 -0.6
1,401,179 - LRK54_RS06515 0.12 -1.8
1,401,179 - LRK54_RS06515 0.12 -1.0
1,401,179 - LRK54_RS06515 0.12 -2.5
1,401,179 - LRK54_RS06515 0.12 -1.5
1,402,568 - +0.3

Or see this region's nucleotide sequence