Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS05990

Experiment: R2A with SpecU metal mix 1 X

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLRK54_RS05980 and LRK54_RS05985 overlap by 35 nucleotidesLRK54_RS05985 and LRK54_RS05990 are separated by 1 nucleotidesLRK54_RS05990 and LRK54_RS05995 are separated by 82 nucleotides LRK54_RS05980: LRK54_RS05980 - ATP-binding protein, at 1,286,081 to 1,287,502 _RS05980 LRK54_RS05985: LRK54_RS05985 - response regulator transcription factor, at 1,287,468 to 1,288,160 _RS05985 LRK54_RS05990: LRK54_RS05990 - hypothetical protein, at 1,288,162 to 1,288,485 _RS05990 LRK54_RS05995: LRK54_RS05995 - tRNA dihydrouridine(20/20a) synthase DusA, at 1,288,568 to 1,289,554 _RS05995 Position (kb) 1288 1289Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1287.181 kb on - strand, within LRK54_RS05980at 1287.181 kb on - strand, within LRK54_RS05980at 1287.208 kb on - strand, within LRK54_RS05980at 1287.289 kb on + strand, within LRK54_RS05980at 1287.290 kb on - strand, within LRK54_RS05980at 1287.300 kb on + strand, within LRK54_RS05980at 1287.300 kb on + strand, within LRK54_RS05980at 1287.300 kb on + strand, within LRK54_RS05980at 1287.300 kb on + strand, within LRK54_RS05980at 1287.300 kb on + strand, within LRK54_RS05980at 1287.301 kb on - strand, within LRK54_RS05980at 1287.301 kb on - strand, within LRK54_RS05980at 1287.301 kb on - strand, within LRK54_RS05980at 1287.625 kb on + strand, within LRK54_RS05985at 1287.625 kb on + strand, within LRK54_RS05985at 1287.625 kb on + strand, within LRK54_RS05985at 1287.625 kb on + strand, within LRK54_RS05985at 1287.625 kb on + strand, within LRK54_RS05985at 1287.625 kb on + strand, within LRK54_RS05985at 1287.625 kb on + strand, within LRK54_RS05985at 1287.625 kb on + strand, within LRK54_RS05985at 1287.626 kb on - strand, within LRK54_RS05985at 1287.626 kb on - strand, within LRK54_RS05985at 1287.626 kb on - strand, within LRK54_RS05985at 1287.682 kb on + strand, within LRK54_RS05985at 1287.683 kb on - strand, within LRK54_RS05985at 1287.697 kb on + strand, within LRK54_RS05985at 1287.697 kb on + strand, within LRK54_RS05985at 1287.697 kb on + strand, within LRK54_RS05985at 1287.703 kb on + strand, within LRK54_RS05985at 1287.869 kb on - strand, within LRK54_RS05985at 1288.048 kb on + strand, within LRK54_RS05985at 1288.048 kb on + strand, within LRK54_RS05985at 1288.049 kb on - strand, within LRK54_RS05985at 1288.049 kb on - strand, within LRK54_RS05985at 1288.160 kb on + strandat 1288.161 kb on - strandat 1288.161 kb on - strandat 1288.298 kb on + strand, within LRK54_RS05990at 1288.298 kb on + strand, within LRK54_RS05990at 1288.298 kb on + strand, within LRK54_RS05990at 1288.339 kb on + strand, within LRK54_RS05990at 1288.339 kb on + strand, within LRK54_RS05990at 1288.339 kb on + strand, within LRK54_RS05990at 1288.339 kb on + strand, within LRK54_RS05990at 1288.339 kb on + strand, within LRK54_RS05990at 1288.339 kb on + strand, within LRK54_RS05990at 1288.339 kb on + strand, within LRK54_RS05990at 1288.339 kb on + strand, within LRK54_RS05990at 1288.339 kb on + strand, within LRK54_RS05990at 1288.339 kb on + strand, within LRK54_RS05990at 1288.339 kb on + strand, within LRK54_RS05990at 1288.339 kb on + strand, within LRK54_RS05990at 1288.339 kb on + strand, within LRK54_RS05990at 1288.339 kb on + strand, within LRK54_RS05990at 1288.372 kb on + strand, within LRK54_RS05990at 1288.372 kb on + strand, within LRK54_RS05990at 1288.447 kb on + strand, within LRK54_RS05990at 1288.447 kb on + strand, within LRK54_RS05990at 1288.447 kb on + strand, within LRK54_RS05990at 1288.447 kb on + strand, within LRK54_RS05990at 1288.447 kb on + strand, within LRK54_RS05990at 1288.447 kb on + strand, within LRK54_RS05990at 1288.447 kb on + strand, within LRK54_RS05990at 1288.447 kb on + strand, within LRK54_RS05990at 1288.447 kb on + strand, within LRK54_RS05990at 1288.448 kb on - strand, within LRK54_RS05990at 1288.526 kb on + strandat 1288.526 kb on + strandat 1288.526 kb on + strandat 1288.526 kb on + strandat 1288.526 kb on + strandat 1288.527 kb on - strandat 1288.527 kb on - strandat 1288.527 kb on - strandat 1288.527 kb on - strandat 1288.527 kb on - strandat 1288.544 kb on + strandat 1288.544 kb on + strandat 1288.544 kb on + strandat 1288.544 kb on + strandat 1288.545 kb on - strandat 1288.545 kb on - strandat 1288.545 kb on - strandat 1288.545 kb on - strandat 1288.686 kb on + strand, within LRK54_RS05995at 1288.686 kb on + strand, within LRK54_RS05995at 1288.686 kb on + strand, within LRK54_RS05995at 1288.687 kb on - strand, within LRK54_RS05995at 1288.687 kb on - strand, within LRK54_RS05995at 1288.687 kb on - strand, within LRK54_RS05995at 1288.687 kb on - strand, within LRK54_RS05995at 1288.687 kb on - strand, within LRK54_RS05995at 1288.687 kb on - strand, within LRK54_RS05995at 1288.687 kb on - strand, within LRK54_RS05995at 1288.687 kb on - strand, within LRK54_RS05995at 1288.752 kb on + strand, within LRK54_RS05995at 1288.752 kb on + strand, within LRK54_RS05995at 1288.753 kb on - strand, within LRK54_RS05995at 1288.753 kb on - strand, within LRK54_RS05995at 1288.753 kb on - strand, within LRK54_RS05995at 1288.753 kb on - strand, within LRK54_RS05995at 1288.753 kb on - strand, within LRK54_RS05995at 1288.753 kb on - strand, within LRK54_RS05995at 1288.833 kb on + strand, within LRK54_RS05995at 1288.834 kb on - strand, within LRK54_RS05995at 1288.834 kb on - strand, within LRK54_RS05995at 1288.845 kb on + strand, within LRK54_RS05995at 1288.846 kb on - strand, within LRK54_RS05995at 1288.846 kb on - strand, within LRK54_RS05995at 1288.916 kb on - strand, within LRK54_RS05995at 1288.934 kb on + strand, within LRK54_RS05995at 1288.934 kb on + strand, within LRK54_RS05995at 1288.934 kb on + strand, within LRK54_RS05995at 1288.934 kb on + strand, within LRK54_RS05995at 1288.934 kb on + strand, within LRK54_RS05995at 1288.935 kb on - strand, within LRK54_RS05995at 1288.965 kb on + strand, within LRK54_RS05995at 1288.965 kb on + strand, within LRK54_RS05995at 1288.977 kb on + strand, within LRK54_RS05995at 1288.977 kb on + strand, within LRK54_RS05995at 1288.977 kb on + strand, within LRK54_RS05995at 1288.977 kb on + strand, within LRK54_RS05995at 1288.977 kb on + strand, within LRK54_RS05995at 1288.977 kb on + strand, within LRK54_RS05995at 1288.977 kb on + strand, within LRK54_RS05995at 1288.977 kb on + strand, within LRK54_RS05995at 1288.978 kb on - strand, within LRK54_RS05995at 1288.978 kb on - strand, within LRK54_RS05995at 1288.978 kb on - strand, within LRK54_RS05995at 1288.978 kb on - strand, within LRK54_RS05995at 1288.978 kb on - strand, within LRK54_RS05995at 1288.978 kb on - strand, within LRK54_RS05995at 1289.106 kb on + strand, within LRK54_RS05995at 1289.106 kb on + strand, within LRK54_RS05995at 1289.159 kb on + strand, within LRK54_RS05995at 1289.160 kb on - strand, within LRK54_RS05995at 1289.160 kb on - strand, within LRK54_RS05995at 1289.160 kb on - strand, within LRK54_RS05995at 1289.208 kb on + strand, within LRK54_RS05995at 1289.208 kb on + strand, within LRK54_RS05995at 1289.208 kb on + strand, within LRK54_RS05995at 1289.208 kb on + strand, within LRK54_RS05995at 1289.208 kb on + strand, within LRK54_RS05995at 1289.208 kb on + strand, within LRK54_RS05995at 1289.208 kb on + strand, within LRK54_RS05995at 1289.208 kb on + strand, within LRK54_RS05995at 1289.208 kb on + strand, within LRK54_RS05995at 1289.208 kb on + strand, within LRK54_RS05995at 1289.209 kb on + strand, within LRK54_RS05995at 1289.209 kb on - strand, within LRK54_RS05995at 1289.209 kb on - strand, within LRK54_RS05995at 1289.209 kb on - strand, within LRK54_RS05995at 1289.209 kb on - strand, within LRK54_RS05995at 1289.209 kb on - strand, within LRK54_RS05995at 1289.209 kb on - strand, within LRK54_RS05995at 1289.209 kb on - strand, within LRK54_RS05995at 1289.209 kb on - strand, within LRK54_RS05995at 1289.209 kb on - strand, within LRK54_RS05995at 1289.209 kb on - strand, within LRK54_RS05995at 1289.209 kb on - strand, within LRK54_RS05995at 1289.209 kb on - strand, within LRK54_RS05995at 1289.209 kb on - strand, within LRK54_RS05995at 1289.209 kb on - strand, within LRK54_RS05995at 1289.209 kb on - strand, within LRK54_RS05995at 1289.209 kb on - strand, within LRK54_RS05995at 1289.284 kb on - strand, within LRK54_RS05995at 1289.325 kb on + strand, within LRK54_RS05995at 1289.325 kb on + strand, within LRK54_RS05995at 1289.325 kb on + strand, within LRK54_RS05995at 1289.326 kb on - strand, within LRK54_RS05995at 1289.326 kb on - strand, within LRK54_RS05995at 1289.434 kb on + strand, within LRK54_RS05995at 1289.434 kb on + strand, within LRK54_RS05995at 1289.435 kb on - strand, within LRK54_RS05995at 1289.436 kb on + strand, within LRK54_RS05995at 1289.436 kb on + strand, within LRK54_RS05995at 1289.436 kb on + strand, within LRK54_RS05995at 1289.436 kb on + strand, within LRK54_RS05995at 1289.436 kb on + strand, within LRK54_RS05995at 1289.436 kb on + strand, within LRK54_RS05995at 1289.436 kb on + strand, within LRK54_RS05995at 1289.437 kb on - strand, within LRK54_RS05995at 1289.437 kb on - strand, within LRK54_RS05995at 1289.437 kb on - strand, within LRK54_RS05995at 1289.437 kb on - strand, within LRK54_RS05995at 1289.437 kb on - strand, within LRK54_RS05995at 1289.437 kb on - strand, within LRK54_RS05995at 1289.437 kb on - strand, within LRK54_RS05995at 1289.437 kb on - strand, within LRK54_RS05995at 1289.437 kb on - strand, within LRK54_RS05995at 1289.437 kb on - strand, within LRK54_RS05995at 1289.437 kb on - strand, within LRK54_RS05995at 1289.437 kb on - strand, within LRK54_RS05995at 1289.437 kb on - strand, within LRK54_RS05995at 1289.437 kb on - strand, within LRK54_RS05995at 1289.472 kb on + strandat 1289.472 kb on + strandat 1289.472 kb on + strandat 1289.472 kb on + strandat 1289.473 kb on - strandat 1289.473 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with SpecU metal mix 1 X
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1,287,181 - LRK54_RS05980 0.77 +0.8
1,287,181 - LRK54_RS05980 0.77 -1.5
1,287,208 - LRK54_RS05980 0.79 -2.2
1,287,289 + LRK54_RS05980 0.85 -1.2
1,287,290 - LRK54_RS05980 0.85 -0.8
1,287,300 + LRK54_RS05980 0.86 -1.8
1,287,300 + LRK54_RS05980 0.86 -1.2
1,287,300 + LRK54_RS05980 0.86 +0.8
1,287,300 + LRK54_RS05980 0.86 -0.2
1,287,300 + LRK54_RS05980 0.86 +0.8
1,287,301 - LRK54_RS05980 0.86 -1.8
1,287,301 - LRK54_RS05980 0.86 -0.8
1,287,301 - LRK54_RS05980 0.86 -0.2
1,287,625 + LRK54_RS05985 0.23 -0.2
1,287,625 + LRK54_RS05985 0.23 -0.2
1,287,625 + LRK54_RS05985 0.23 -1.2
1,287,625 + LRK54_RS05985 0.23 -2.2
1,287,625 + LRK54_RS05985 0.23 -2.0
1,287,625 + LRK54_RS05985 0.23 -2.0
1,287,625 + LRK54_RS05985 0.23 -0.2
1,287,625 + LRK54_RS05985 0.23 -0.8
1,287,626 - LRK54_RS05985 0.23 -0.2
1,287,626 - LRK54_RS05985 0.23 -0.8
1,287,626 - LRK54_RS05985 0.23 +0.8
1,287,682 + LRK54_RS05985 0.31 +0.8
1,287,683 - LRK54_RS05985 0.31 -0.8
1,287,697 + LRK54_RS05985 0.33 -1.2
1,287,697 + LRK54_RS05985 0.33 -1.5
1,287,697 + LRK54_RS05985 0.33 -1.5
1,287,703 + LRK54_RS05985 0.34 -0.2
1,287,869 - LRK54_RS05985 0.58 -0.8
1,288,048 + LRK54_RS05985 0.84 -0.8
1,288,048 + LRK54_RS05985 0.84 -0.2
1,288,049 - LRK54_RS05985 0.84 -0.8
1,288,049 - LRK54_RS05985 0.84 -0.2
1,288,160 + +0.8
1,288,161 - -2.7
1,288,161 - -0.8
1,288,298 + LRK54_RS05990 0.42 -1.7
1,288,298 + LRK54_RS05990 0.42 +1.1
1,288,298 + LRK54_RS05990 0.42 -1.1
1,288,339 + LRK54_RS05990 0.55 +0.8
1,288,339 + LRK54_RS05990 0.55 -1.5
1,288,339 + LRK54_RS05990 0.55 -0.5
1,288,339 + LRK54_RS05990 0.55 -1.3
1,288,339 + LRK54_RS05990 0.55 -1.5
1,288,339 + LRK54_RS05990 0.55 -2.0
1,288,339 + LRK54_RS05990 0.55 -2.0
1,288,339 + LRK54_RS05990 0.55 -1.7
1,288,339 + LRK54_RS05990 0.55 -3.3
1,288,339 + LRK54_RS05990 0.55 -2.2
1,288,339 + LRK54_RS05990 0.55 -2.6
1,288,339 + LRK54_RS05990 0.55 -0.8
1,288,339 + LRK54_RS05990 0.55 -1.5
1,288,339 + LRK54_RS05990 0.55 -0.8
1,288,372 + LRK54_RS05990 0.65 -2.4
1,288,372 + LRK54_RS05990 0.65 -1.9
1,288,447 + LRK54_RS05990 0.88 -1.9
1,288,447 + LRK54_RS05990 0.88 -0.8
1,288,447 + LRK54_RS05990 0.88 -0.5
1,288,447 + LRK54_RS05990 0.88 -3.6
1,288,447 + LRK54_RS05990 0.88 -2.9
1,288,447 + LRK54_RS05990 0.88 -2.1
1,288,447 + LRK54_RS05990 0.88 -1.4
1,288,447 + LRK54_RS05990 0.88 -1.8
1,288,447 + LRK54_RS05990 0.88 -0.8
1,288,448 - LRK54_RS05990 0.88 -0.2
1,288,526 + +0.9
1,288,526 + +0.9
1,288,526 + +1.4
1,288,526 + +0.3
1,288,526 + +0.2
1,288,527 - -0.5
1,288,527 - -0.2
1,288,527 - +0.0
1,288,527 - +0.0
1,288,527 - +0.1
1,288,544 + -0.7
1,288,544 + -0.3
1,288,544 + +0.8
1,288,544 + -1.0
1,288,545 - -0.1
1,288,545 - -0.4
1,288,545 - +1.2
1,288,545 - +1.1
1,288,686 + LRK54_RS05995 0.12 +1.0
1,288,686 + LRK54_RS05995 0.12 +0.9
1,288,686 + LRK54_RS05995 0.12 +1.8
1,288,687 - LRK54_RS05995 0.12 -1.8
1,288,687 - LRK54_RS05995 0.12 +0.8
1,288,687 - LRK54_RS05995 0.12 +0.9
1,288,687 - LRK54_RS05995 0.12 +0.9
1,288,687 - LRK54_RS05995 0.12 +0.7
1,288,687 - LRK54_RS05995 0.12 +0.1
1,288,687 - LRK54_RS05995 0.12 +0.2
1,288,687 - LRK54_RS05995 0.12 +1.8
1,288,752 + LRK54_RS05995 0.19 +0.7
1,288,752 + LRK54_RS05995 0.19 -0.6
1,288,753 - LRK54_RS05995 0.19 +0.6
1,288,753 - LRK54_RS05995 0.19 +0.9
1,288,753 - LRK54_RS05995 0.19 -1.2
1,288,753 - LRK54_RS05995 0.19 +1.5
1,288,753 - LRK54_RS05995 0.19 -1.0
1,288,753 - LRK54_RS05995 0.19 -0.5
1,288,833 + LRK54_RS05995 0.27 +0.8
1,288,834 - LRK54_RS05995 0.27 +1.4
1,288,834 - LRK54_RS05995 0.27 +0.2
1,288,845 + LRK54_RS05995 0.28 +1.6
1,288,846 - LRK54_RS05995 0.28 +0.6
1,288,846 - LRK54_RS05995 0.28 +0.9
1,288,916 - LRK54_RS05995 0.35 +1.6
1,288,934 + LRK54_RS05995 0.37 +1.1
1,288,934 + LRK54_RS05995 0.37 +0.9
1,288,934 + LRK54_RS05995 0.37 +0.0
1,288,934 + LRK54_RS05995 0.37 +1.0
1,288,934 + LRK54_RS05995 0.37 +1.1
1,288,935 - LRK54_RS05995 0.37 +0.3
1,288,965 + LRK54_RS05995 0.40 +1.4
1,288,965 + LRK54_RS05995 0.40 +0.1
1,288,977 + LRK54_RS05995 0.41 +0.7
1,288,977 + LRK54_RS05995 0.41 +1.0
1,288,977 + LRK54_RS05995 0.41 +0.7
1,288,977 + LRK54_RS05995 0.41 -0.1
1,288,977 + LRK54_RS05995 0.41 +0.1
1,288,977 + LRK54_RS05995 0.41 +1.0
1,288,977 + LRK54_RS05995 0.41 +0.4
1,288,977 + LRK54_RS05995 0.41 +1.5
1,288,978 - LRK54_RS05995 0.42 +1.5
1,288,978 - LRK54_RS05995 0.42 +1.6
1,288,978 - LRK54_RS05995 0.42 +1.5
1,288,978 - LRK54_RS05995 0.42 +0.8
1,288,978 - LRK54_RS05995 0.42 +1.5
1,288,978 - LRK54_RS05995 0.42 +0.4
1,289,106 + LRK54_RS05995 0.55 +0.6
1,289,106 + LRK54_RS05995 0.55 +0.4
1,289,159 + LRK54_RS05995 0.60 +1.7
1,289,160 - LRK54_RS05995 0.60 +1.2
1,289,160 - LRK54_RS05995 0.60 +1.7
1,289,160 - LRK54_RS05995 0.60 +0.9
1,289,208 + LRK54_RS05995 0.65 +1.5
1,289,208 + LRK54_RS05995 0.65 +0.8
1,289,208 + LRK54_RS05995 0.65 +0.6
1,289,208 + LRK54_RS05995 0.65 +2.7
1,289,208 + LRK54_RS05995 0.65 +0.7
1,289,208 + LRK54_RS05995 0.65 +1.1
1,289,208 + LRK54_RS05995 0.65 +0.9
1,289,208 + LRK54_RS05995 0.65 +1.4
1,289,208 + LRK54_RS05995 0.65 +0.7
1,289,208 + LRK54_RS05995 0.65 -1.1
1,289,209 + LRK54_RS05995 0.65 +0.4
1,289,209 - LRK54_RS05995 0.65 +1.0
1,289,209 - LRK54_RS05995 0.65 +0.9
1,289,209 - LRK54_RS05995 0.65 +2.1
1,289,209 - LRK54_RS05995 0.65 +0.6
1,289,209 - LRK54_RS05995 0.65 +0.6
1,289,209 - LRK54_RS05995 0.65 -0.2
1,289,209 - LRK54_RS05995 0.65 +1.1
1,289,209 - LRK54_RS05995 0.65 -0.2
1,289,209 - LRK54_RS05995 0.65 +0.1
1,289,209 - LRK54_RS05995 0.65 +0.3
1,289,209 - LRK54_RS05995 0.65 +0.2
1,289,209 - LRK54_RS05995 0.65 +0.5
1,289,209 - LRK54_RS05995 0.65 +0.5
1,289,209 - LRK54_RS05995 0.65 +0.1
1,289,209 - LRK54_RS05995 0.65 +1.7
1,289,209 - LRK54_RS05995 0.65 +1.5
1,289,284 - LRK54_RS05995 0.73 +0.8
1,289,325 + LRK54_RS05995 0.77 +0.8
1,289,325 + LRK54_RS05995 0.77 +0.8
1,289,325 + LRK54_RS05995 0.77 +0.4
1,289,326 - LRK54_RS05995 0.77 +0.1
1,289,326 - LRK54_RS05995 0.77 -0.1
1,289,434 + LRK54_RS05995 0.88 -0.1
1,289,434 + LRK54_RS05995 0.88 +0.4
1,289,435 - LRK54_RS05995 0.88 +1.4
1,289,436 + LRK54_RS05995 0.88 +0.9
1,289,436 + LRK54_RS05995 0.88 +1.1
1,289,436 + LRK54_RS05995 0.88 -0.3
1,289,436 + LRK54_RS05995 0.88 +0.5
1,289,436 + LRK54_RS05995 0.88 -0.7
1,289,436 + LRK54_RS05995 0.88 +0.6
1,289,436 + LRK54_RS05995 0.88 -0.3
1,289,437 - LRK54_RS05995 0.88 -0.2
1,289,437 - LRK54_RS05995 0.88 -0.4
1,289,437 - LRK54_RS05995 0.88 +0.2
1,289,437 - LRK54_RS05995 0.88 +1.3
1,289,437 - LRK54_RS05995 0.88 +1.3
1,289,437 - LRK54_RS05995 0.88 +0.8
1,289,437 - LRK54_RS05995 0.88 +0.9
1,289,437 - LRK54_RS05995 0.88 +1.2
1,289,437 - LRK54_RS05995 0.88 -0.0
1,289,437 - LRK54_RS05995 0.88 +0.3
1,289,437 - LRK54_RS05995 0.88 +1.1
1,289,437 - LRK54_RS05995 0.88 +0.9
1,289,437 - LRK54_RS05995 0.88 -0.2
1,289,437 - LRK54_RS05995 0.88 +1.4
1,289,472 + +0.5
1,289,472 + +0.6
1,289,472 + -0.5
1,289,472 + +0.8
1,289,473 - +0.7
1,289,473 - +0.0

Or see this region's nucleotide sequence