Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS05785

Experiment: R2A with SpecU metal mix 1 X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with SpecU metal mix 1 X
1,249,419	+		LRK54_RS05780	0.11	+0.5
1,249,419	+		LRK54_RS05780	0.11	+0.6
1,249,419	+		LRK54_RS05780	0.11	+1.9
1,249,419	+		LRK54_RS05780	0.11	-0.8
1,249,419	+		LRK54_RS05780	0.11	-0.3
1,249,419	+		LRK54_RS05780	0.11	+1.5
1,249,419	+		LRK54_RS05780	0.11	-0.0
1,249,419	+		LRK54_RS05780	0.11	-0.9
1,249,419	+		LRK54_RS05780	0.11	-0.4
1,249,419	+		LRK54_RS05780	0.11	+0.3
1,249,419	+		LRK54_RS05780	0.11	-0.2
1,249,419	+		LRK54_RS05780	0.11	+0.3
1,249,419	+		LRK54_RS05780	0.11	+0.1
1,249,419	+		LRK54_RS05780	0.11	+0.7
1,249,419	+		LRK54_RS05780	0.11	-2.7
1,249,419	+		LRK54_RS05780	0.11	+1.3
1,249,419	+		LRK54_RS05780	0.11	-0.2
1,249,419	+		LRK54_RS05780	0.11	+0.9
1,249,419	+		LRK54_RS05780	0.11	+0.5
1,249,419	+		LRK54_RS05780	0.11	+0.1
1,249,419	+		LRK54_RS05780	0.11	+0.9
1,249,419	+		LRK54_RS05780	0.11	+2.2
1,249,419	+		LRK54_RS05780	0.11	-0.2
1,249,419	+		LRK54_RS05780	0.11	-0.7
1,249,419	+		LRK54_RS05780	0.11	-0.0
1,249,419	+		LRK54_RS05780	0.11	-1.7
1,249,419	+		LRK54_RS05780	0.11	-0.3
1,249,419	+		LRK54_RS05780	0.11	+0.5
1,249,419	+		LRK54_RS05780	0.11	-0.1
1,249,419	+		LRK54_RS05780	0.11	+0.6
1,249,419	+		LRK54_RS05780	0.11	-0.0
1,249,419	+		LRK54_RS05780	0.11	+0.9
1,249,419	+		LRK54_RS05780	0.11	+0.4
1,249,419	+		LRK54_RS05780	0.11	+0.4
1,249,419	+		LRK54_RS05780	0.11	-0.1
1,249,419	+		LRK54_RS05780	0.11	-0.2
1,249,420	-		LRK54_RS05780	0.12	-0.8
1,249,420	-		LRK54_RS05780	0.12	+0.2
1,249,420	-		LRK54_RS05780	0.12	+0.8
1,249,420	-		LRK54_RS05780	0.12	-1.8
1,249,420	-		LRK54_RS05780	0.12	-0.4
1,249,420	-		LRK54_RS05780	0.12	-0.1
1,249,420	-		LRK54_RS05780	0.12	-0.4
1,249,420	-		LRK54_RS05780	0.12	+0.4
1,249,420	-		LRK54_RS05780	0.12	-0.5
1,249,420	-		LRK54_RS05780	0.12	+0.2
1,249,420	-		LRK54_RS05780	0.12	-0.3
1,249,420	-		LRK54_RS05780	0.12	-1.2
1,249,420	-		LRK54_RS05780	0.12	-0.4
1,249,420	-		LRK54_RS05780	0.12	+1.4
1,249,420	-		LRK54_RS05780	0.12	+1.4
1,249,420	-		LRK54_RS05780	0.12	+0.8
1,249,420	-		LRK54_RS05780	0.12	-0.6
1,249,420	-		LRK54_RS05780	0.12	+0.8
1,249,420	-		LRK54_RS05780	0.12	+0.8
1,249,420	-		LRK54_RS05780	0.12	+0.1
1,249,420	-		LRK54_RS05780	0.12	-1.2
1,249,420	-		LRK54_RS05780	0.12	-1.0
1,249,420	-		LRK54_RS05780	0.12	+0.3
1,249,420	-		LRK54_RS05780	0.12	-2.2
1,249,420	-		LRK54_RS05780	0.12	+0.1
1,249,420	-		LRK54_RS05780	0.12	+0.8
1,249,420	-		LRK54_RS05780	0.12	-1.2
1,249,420	-		LRK54_RS05780	0.12	+0.9
1,249,420	-		LRK54_RS05780	0.12	+0.8
1,249,449	+		LRK54_RS05780	0.15	-1.4
1,249,449	+		LRK54_RS05780	0.15	+1.8
1,249,449	+		LRK54_RS05780	0.15	+0.2
1,249,450	-		LRK54_RS05780	0.15	+0.4
1,249,450	-		LRK54_RS05780	0.15	-0.8
1,249,450	-		LRK54_RS05780	0.15	+0.8
1,249,450	-		LRK54_RS05780	0.15	-0.1
1,249,450	-		LRK54_RS05780	0.15	-0.3
1,249,500	+		LRK54_RS05780	0.21	-0.8
1,249,500	+		LRK54_RS05780	0.21	-0.2
1,249,501	-				-0.2
1,249,501	-		LRK54_RS05780	0.21	+0.2
1,249,569	+		LRK54_RS05780	0.30	-0.1
1,249,570	-		LRK54_RS05780	0.30	+0.3
1,249,570	-		LRK54_RS05780	0.30	+0.2
1,249,570	-		LRK54_RS05780	0.30	+1.4
1,249,570	-		LRK54_RS05780	0.30	+0.8
1,249,794	+		LRK54_RS05780	0.57	-0.7
1,249,794	+		LRK54_RS05780	0.57	+1.4
1,249,794	+		LRK54_RS05780	0.57	+0.5
1,249,794	+		LRK54_RS05780	0.57	+0.1
1,249,794	+		LRK54_RS05780	0.57	-0.8
1,249,794	+		LRK54_RS05780	0.57	+1.0
1,249,794	+		LRK54_RS05780	0.57	+0.8
1,249,794	+		LRK54_RS05780	0.57	+0.2
1,249,794	+		LRK54_RS05780	0.57	+0.5
1,249,794	+		LRK54_RS05780	0.57	-0.5
1,249,795	-		LRK54_RS05780	0.57	+0.1
1,249,795	-		LRK54_RS05780	0.57	+1.3
1,249,795	-		LRK54_RS05780	0.57	-0.8
1,249,795	-		LRK54_RS05780	0.57	-1.2
1,249,795	-		LRK54_RS05780	0.57	+0.6
1,249,849	+		LRK54_RS05780	0.64	+1.0
1,249,851	+		LRK54_RS05780	0.64	-0.9
1,249,851	+		LRK54_RS05780	0.64	-0.6
1,249,851	+		LRK54_RS05780	0.64	+0.3
1,249,851	+		LRK54_RS05780	0.64	+3.1
1,249,851	+		LRK54_RS05780	0.64	-0.0
1,249,851	+		LRK54_RS05780	0.64	+1.6
1,249,852	-		LRK54_RS05780	0.64	-0.2
1,249,852	-		LRK54_RS05780	0.64	-2.2
1,249,852	-		LRK54_RS05780	0.64	-1.8
1,249,852	-		LRK54_RS05780	0.64	-0.2
1,249,852	-		LRK54_RS05780	0.64	-0.4
1,249,852	-		LRK54_RS05780	0.64	+0.1
1,249,852	-		LRK54_RS05780	0.64	+0.3
1,249,852	-		LRK54_RS05780	0.64	+1.4
1,249,852	-		LRK54_RS05780	0.64	+1.1
1,249,852	-		LRK54_RS05780	0.64	+0.2
1,249,852	-		LRK54_RS05780	0.64	-1.0
1,249,884	+		LRK54_RS05780	0.68	-0.4
1,249,884	+		LRK54_RS05780	0.68	+0.5
1,249,884	+		LRK54_RS05780	0.68	+1.8
1,249,884	+		LRK54_RS05780	0.68	+0.2
1,249,884	+		LRK54_RS05780	0.68	+0.5
1,249,884	+		LRK54_RS05780	0.68	-0.4
1,249,884	+		LRK54_RS05780	0.68	+1.5
1,249,884	+		LRK54_RS05780	0.68	-0.0
1,249,884	+		LRK54_RS05780	0.68	+0.7
1,249,884	+		LRK54_RS05780	0.68	-0.5
1,249,884	+		LRK54_RS05780	0.68	+0.2
1,249,884	+		LRK54_RS05780	0.68	+0.1
1,249,884	+		LRK54_RS05780	0.68	+0.0
1,249,884	+		LRK54_RS05780	0.68	-0.9
1,249,884	+		LRK54_RS05780	0.68	+0.1
1,249,884	+		LRK54_RS05780	0.68	+0.8
1,249,885	-		LRK54_RS05780	0.68	+0.5
1,249,885	-		LRK54_RS05780	0.68	-1.5
1,249,885	-		LRK54_RS05780	0.68	-0.2
1,249,885	-		LRK54_RS05780	0.68	-0.4
1,249,885	-		LRK54_RS05780	0.68	+0.4
1,249,885	-		LRK54_RS05780	0.68	+0.0
1,249,885	-		LRK54_RS05780	0.68	-0.5
1,249,885	-		LRK54_RS05780	0.68	-1.2
1,249,885	-		LRK54_RS05780	0.68	+0.2
1,249,885	-		LRK54_RS05780	0.68	-0.0
1,249,885	-		LRK54_RS05780	0.68	-0.8
1,249,885	-		LRK54_RS05780	0.68	-0.2
1,249,885	-		LRK54_RS05780	0.68	-0.7
1,249,885	-		LRK54_RS05780	0.68	+0.6
1,249,885	-		LRK54_RS05780	0.68	+0.1
1,249,885	-		LRK54_RS05780	0.68	-0.3
1,249,885	-		LRK54_RS05780	0.68	-0.3
1,249,885	-		LRK54_RS05780	0.68	-0.7
1,249,885	-		LRK54_RS05780	0.68	-0.8
1,249,885	-		LRK54_RS05780	0.68	+0.1
1,249,885	-		LRK54_RS05780	0.68	+1.6
1,250,221	+				+0.1
1,250,221	+				+0.3
1,250,221	+				+0.8
1,250,221	+				+0.8
1,250,222	-				+0.2
1,250,222	-				+0.3
1,250,222	-				+0.0
1,250,222	-				+0.1
1,250,222	-				+0.6
1,250,222	-				-0.4
1,250,222	-				+0.7
1,250,223	-				-0.6
1,250,434	+		LRK54_RS05785	0.12	-1.0
1,250,434	+		LRK54_RS05785	0.12	+0.8
1,250,434	+		LRK54_RS05785	0.12	-0.2
1,250,434	+		LRK54_RS05785	0.12	-0.8
1,250,434	+		LRK54_RS05785	0.12	-0.8
1,250,434	+		LRK54_RS05785	0.12	-1.2
1,250,435	-		LRK54_RS05785	0.12	-0.8
1,250,435	-		LRK54_RS05785	0.12	-0.8
1,250,435	-		LRK54_RS05785	0.12	-0.2
1,250,443	+		LRK54_RS05785	0.13	-1.8
1,250,443	+		LRK54_RS05785	0.13	-0.2
1,250,443	+		LRK54_RS05785	0.13	-1.8
1,250,443	+		LRK54_RS05785	0.13	-1.0
1,250,443	+		LRK54_RS05785	0.13	-0.8
1,250,443	+		LRK54_RS05785	0.13	-0.2
1,250,443	+		LRK54_RS05785	0.13	-1.5
1,250,443	+		LRK54_RS05785	0.13	+0.8
1,250,443	+		LRK54_RS05785	0.13	+0.0
1,250,443	+		LRK54_RS05785	0.13	-1.2
1,250,443	+		LRK54_RS05785	0.13	-1.5
1,250,443	+		LRK54_RS05785	0.13	-2.2
1,250,443	+		LRK54_RS05785	0.13	-0.2
1,250,443	+		LRK54_RS05785	0.13	-2.0
1,250,444	-		LRK54_RS05785	0.13	-1.5
1,250,444	-		LRK54_RS05785	0.13	+2.4
1,250,444	-		LRK54_RS05785	0.13	-0.8
1,250,444	-		LRK54_RS05785	0.13	-2.4
1,250,444	-		LRK54_RS05785	0.13	-1.1
1,250,444	-		LRK54_RS05785	0.13	-1.2
1,250,444	-		LRK54_RS05785	0.13	-0.8
1,250,444	-		LRK54_RS05785	0.13	-0.8
1,250,444	-		LRK54_RS05785	0.13	+0.8
1,250,444	-		LRK54_RS05785	0.13	-2.7
1,250,444	-		LRK54_RS05785	0.13	-0.0
1,250,444	-		LRK54_RS05785	0.13	-2.8
1,250,444	-		LRK54_RS05785	0.13	+3.1
1,250,444	-		LRK54_RS05785	0.13	-0.8
1,250,444	-		LRK54_RS05785	0.13	-2.0
1,250,444	-		LRK54_RS05785	0.13	-1.8
1,250,444	-		LRK54_RS05785	0.13	+0.8
1,250,444	-		LRK54_RS05785	0.13	-0.5
1,250,444	-		LRK54_RS05785	0.13	-0.5
1,250,444	-		LRK54_RS05785	0.13	+0.4
1,250,444	-		LRK54_RS05785	0.13	-1.5
1,250,444	-		LRK54_RS05785	0.13	-0.8
1,250,731	+		LRK54_RS05785	0.42	-1.8
1,250,731	+		LRK54_RS05785	0.42	+0.8
1,250,731	+		LRK54_RS05785	0.42	-0.8
1,250,731	+		LRK54_RS05785	0.42	-0.8
1,250,732	-		LRK54_RS05785	0.42	-0.2
1,250,732	-		LRK54_RS05785	0.42	-2.4
1,250,732	-		LRK54_RS05785	0.42	+2.4
1,250,732	-		LRK54_RS05785	0.42	-1.2
1,250,732	-		LRK54_RS05785	0.42	-0.8
1,251,073	+		LRK54_RS05785	0.76	-1.2
1,251,073	+		LRK54_RS05785	0.76	-1.1
1,251,073	+		LRK54_RS05785	0.76	-1.5
1,251,073	+		LRK54_RS05785	0.76	-1.8
1,251,073	+		LRK54_RS05785	0.76	-1.2
1,251,073	+		LRK54_RS05785	0.76	+0.8
1,251,073	+		LRK54_RS05785	0.76	-2.4
1,251,074	-		LRK54_RS05785	0.76	-1.5
1,251,074	-		LRK54_RS05785	0.76	+0.5
1,251,074	-		LRK54_RS05785	0.76	-0.2
1,251,074	-		LRK54_RS05785	0.76	-1.2
1,251,074	-		LRK54_RS05785	0.76	+0.8
1,251,074	-		LRK54_RS05785	0.76	-0.9
1,251,074	-		LRK54_RS05785	0.76	+0.8
1,251,074	-		LRK54_RS05785	0.76	-1.2
1,251,074	-		LRK54_RS05785	0.76	-2.2
1,251,074	-				+0.8
1,251,136	+		LRK54_RS05785	0.82	-1.2
1,251,137	-		LRK54_RS05785	0.82	+0.0
1,251,250	+				-1.2
1,251,250	+				-0.2
1,251,250	+				-0.8
1,251,251	-				-1.5
1,251,251	-				-1.2
1,251,268	+				+0.2
1,251,310	+				+0.1
1,251,310	+				-0.4
1,251,310	+				-2.2
1,251,310	+				-0.1
1,251,310	+				+0.1
1,251,310	+				-0.2
1,251,310	+				+2.4
1,251,310	+				+0.8
1,251,310	+				-0.2
1,251,310	+				+0.0
1,251,310	+				-0.2
1,251,310	+				-1.1
1,251,310	+				-0.3
1,251,310	+				-0.1
1,251,310	+				-0.2
1,251,310	+				+0.4
1,251,310	+				-1.2
1,251,310	+				+0.2
1,251,310	+				-0.0
1,251,310	+				+0.2
1,251,310	+				-0.1
1,251,310	+				+0.8
1,251,310	+				-0.7
1,251,310	+				-0.2
1,251,310	+				-0.2
1,251,310	+				+0.4
1,251,310	+				-0.5
1,251,310	+				-0.0
1,251,310	+				-0.8
1,251,310	+				+0.8
1,251,310	+				+0.0
1,251,310	+				-0.8
1,251,310	+				+0.7
1,251,310	+				+1.2
1,251,310	+				-0.5
1,251,311	-				+0.2
1,251,311	-				-2.0
1,251,311	-				+0.1
1,251,311	-				-2.4
1,251,311	-				-1.9
1,251,311	-				-0.5
1,251,311	-				-0.6
1,251,311	-				-2.4
1,251,311	-				-0.8
1,251,311	-				-0.8
1,251,311	-				-0.9
1,251,311	-				-0.1
1,251,311	-				-0.0
1,251,311	-				-0.8
1,251,311	-				+0.8
1,251,311	-				+0.6
1,251,361	+				+0.3
1,251,362	-				-1.2
1,251,370	+				+0.2
1,251,370	+				-0.8
1,251,371	-				-0.8
1,251,371	-				+1.4
1,251,371	-				+0.1
1,251,371	-				-0.2
1,251,371	-				+0.8
1,251,391	+				-0.6
1,251,391	+				+0.3
1,251,391	+				+0.7
1,251,392	-				+0.7
1,251,392	-				-0.2
1,251,392	-				-1.2
1,251,825	+				-0.1
1,251,825	+				-0.1
1,251,825	+				-0.0
1,251,825	+				+0.3
1,251,825	+				+0.2
1,251,825	+				+0.4
1,251,825	+				-0.8
1,251,825	+				+0.5
1,251,825	+				+0.4
1,251,826	-				-0.2
1,251,826	-				+0.1
1,251,826	-				-0.2
1,251,826	-				-1.2
1,251,826	-				-0.2
1,251,826	-				-0.8
1,251,826	-				+0.5
1,251,826	-				+0.8
1,251,826	-				-0.5
1,251,826	-				-0.6
1,251,826	-				+0.6
1,251,826	-				-0.2
1,251,826	-				+0.3
1,251,971	+				-0.2
1,251,971	+				+0.0
1,251,971	+				+0.4
1,251,971	+				+0.4
1,251,971	+				-0.1
1,251,972	-				+0.2
1,251,972	-				+0.1
1,251,972	-				+0.6
1,251,972	-				-0.2
1,251,972	-				+1.1
1,251,972	-				+0.4
1,252,150	-		LRK54_RS05795	0.48	-0.7
1,252,207	+		LRK54_RS05795	0.60	-0.8
1,252,207	+		LRK54_RS05795	0.60	+0.3
1,252,207	+		LRK54_RS05795	0.60	+0.4
1,252,207	+		LRK54_RS05795	0.60	+1.5
1,252,207	+		LRK54_RS05795	0.60	-0.1
1,252,207	+		LRK54_RS05795	0.60	-0.2
1,252,207	+		LRK54_RS05795	0.60	-0.4
1,252,207	+		LRK54_RS05795	0.60	+0.8
1,252,208	-		LRK54_RS05795	0.61	+1.8
1,252,208	-		LRK54_RS05795	0.61	-0.3
1,252,208	-		LRK54_RS05795	0.61	+0.1
1,252,208	-		LRK54_RS05795	0.61	+0.3
1,252,208	-		LRK54_RS05795	0.61	+0.4
1,252,208	-		LRK54_RS05795	0.61	-0.2
1,252,208	-		LRK54_RS05795	0.61	-0.2
1,252,208	-		LRK54_RS05795	0.61	+1.2
1,252,208	-		LRK54_RS05795	0.61	-0.9
1,252,242	+		LRK54_RS05795	0.68	+0.6
1,252,242	+		LRK54_RS05795	0.68	-0.3
1,252,242	+		LRK54_RS05795	0.68	-0.2
1,252,242	+		LRK54_RS05795	0.68	+0.6
1,252,242	+		LRK54_RS05795	0.68	+1.3
1,252,242	+		LRK54_RS05795	0.68	+1.8
1,252,242	+		LRK54_RS05795	0.68	+0.1
1,252,243	-		LRK54_RS05795	0.68	-1.2
1,252,243	-		LRK54_RS05795	0.68	-0.8
1,252,243	-		LRK54_RS05795	0.68	-0.8
1,252,243	-		LRK54_RS05795	0.68	-0.2
1,252,243	-		LRK54_RS05795	0.68	+0.0
1,252,243	-		LRK54_RS05795	0.68	+0.0
1,252,243	-		LRK54_RS05795	0.68	+0.1