Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS05685

Experiment: R2A with SpecU metal mix 1 X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with SpecU metal mix 1 X
1,227,299	+				-1.8
1,227,299	+				-0.0
1,227,299	+				+0.3
1,227,299	+				-0.3
1,227,299	+				-0.1
1,227,299	+				-0.9
1,227,299	+				-0.1
1,227,299	+				+0.9
1,227,299	+				-0.4
1,227,300	-				+0.3
1,227,300	-				-0.2
1,227,300	-				+0.8
1,227,300	-				-0.7
1,227,300	-				-0.1
1,227,300	-				+0.0
1,227,300	-				+1.4
1,227,300	-				+0.1
1,227,347	+				+1.5
1,227,347	+				-0.3
1,227,347	+				+0.1
1,227,347	+				-1.4
1,227,347	+				+2.8
1,227,347	+				-1.9
1,227,347	+				-0.2
1,227,347	+				-1.0
1,227,347	+				+0.4
1,227,347	+				+0.2
1,227,347	+				+0.1
1,227,347	+				+0.6
1,227,347	+				+0.2
1,227,347	+				+0.6
1,227,347	+				+0.5
1,227,348	-				-0.4
1,227,348	-				-0.1
1,227,348	-				-0.7
1,227,348	-				-1.4
1,227,348	-				-0.3
1,227,348	-				-2.0
1,227,348	-				+0.7
1,227,348	-				+1.1
1,227,348	-				-1.0
1,227,371	-				+0.4
1,227,371	-				-0.4
1,227,884	+		LRK54_RS05685	0.33	-0.8
1,227,884	+		LRK54_RS05685	0.33	-3.7
1,227,884	+		LRK54_RS05685	0.33	-3.5
1,227,884	+		LRK54_RS05685	0.33	-1.7
1,227,884	+		LRK54_RS05685	0.33	-1.2
1,227,884	+		LRK54_RS05685	0.33	-1.8
1,227,884	+		LRK54_RS05685	0.33	-2.7
1,227,884	+		LRK54_RS05685	0.33	-2.9
1,227,884	+		LRK54_RS05685	0.33	-1.8
1,227,885	-		LRK54_RS05685	0.33	-4.6
1,227,885	-		LRK54_RS05685	0.33	-4.2
1,227,885	-		LRK54_RS05685	0.33	-2.9
1,227,885	-		LRK54_RS05685	0.33	-2.0
1,227,885	-		LRK54_RS05685	0.33	-1.5
1,227,885	-		LRK54_RS05685	0.33	-3.5
1,227,914	+		LRK54_RS05685	0.35	-0.8
1,227,971	+		LRK54_RS05685	0.39	-3.1
1,227,971	+		LRK54_RS05685	0.39	-3.0
1,227,971	+		LRK54_RS05685	0.39	-1.0
1,227,971	+		LRK54_RS05685	0.39	-4.0
1,227,971	+		LRK54_RS05685	0.39	-1.1
1,227,971	+		LRK54_RS05685	0.39	-1.5
1,227,971	+		LRK54_RS05685	0.39	-2.2
1,227,971	+		LRK54_RS05685	0.39	-3.4
1,227,972	-		LRK54_RS05685	0.39	-1.8
1,227,972	-		LRK54_RS05685	0.39	-5.3
1,227,972	-		LRK54_RS05685	0.39	-2.7
1,227,972	-		LRK54_RS05685	0.39	-3.5
1,227,972	-		LRK54_RS05685	0.39	-0.2
1,227,989	+		LRK54_RS05685	0.40	-4.0
1,228,031	+		LRK54_RS05685	0.43	-3.5
1,228,031	+		LRK54_RS05685	0.43	-3.0
1,228,032	-		LRK54_RS05685	0.43	-2.4
1,228,032	-		LRK54_RS05685	0.43	-1.8
1,228,032	-		LRK54_RS05685	0.43	-4.2
1,228,032	-		LRK54_RS05685	0.43	-1.2
1,228,169	+		LRK54_RS05685	0.53	-1.5
1,228,170	-		LRK54_RS05685	0.53	-1.8
1,228,170	-		LRK54_RS05685	0.53	-1.5
1,228,170	-		LRK54_RS05685	0.53	-1.8
1,228,505	+		LRK54_RS05685	0.77	-4.4
1,228,505	+		LRK54_RS05685	0.77	-2.9
1,228,506	-		LRK54_RS05685	0.77	-1.5
1,228,506	-		LRK54_RS05685	0.77	-2.0
1,228,506	-		LRK54_RS05685	0.77	-0.8
1,228,523	+		LRK54_RS05685	0.78	-1.2
1,228,523	+		LRK54_RS05685	0.78	-1.8
1,228,523	+		LRK54_RS05685	0.78	+0.2
1,228,523	+		LRK54_RS05685	0.78	-4.0
1,228,523	+		LRK54_RS05685	0.78	-1.5
1,228,523	+		LRK54_RS05685	0.78	+0.2
1,228,523	+		LRK54_RS05685	0.78	-2.5
1,228,523	+		LRK54_RS05685	0.78	-2.9
1,228,523	+		LRK54_RS05685	0.78	-2.6
1,228,523	+		LRK54_RS05685	0.78	-1.8
1,228,523	+		LRK54_RS05685	0.78	-2.8
1,228,523	+		LRK54_RS05685	0.78	-2.0
1,228,523	+		LRK54_RS05685	0.78	-2.3
1,228,523	+		LRK54_RS05685	0.78	-3.3
1,228,523	+		LRK54_RS05685	0.78	-3.1
1,228,524	-		LRK54_RS05685	0.78	-3.9
1,228,524	-		LRK54_RS05685	0.78	-2.8
1,228,524	-		LRK54_RS05685	0.78	-1.5
1,228,524	-		LRK54_RS05685	0.78	-2.7
1,228,524	-		LRK54_RS05685	0.78	-3.3
1,228,524	-		LRK54_RS05685	0.78	-4.2
1,228,524	-		LRK54_RS05685	0.78	-3.9
1,228,524	-		LRK54_RS05685	0.78	-1.2
1,228,524	-		LRK54_RS05685	0.78	-1.2
1,228,524	-		LRK54_RS05685	0.78	-2.0
1,228,524	-		LRK54_RS05685	0.78	-1.8
1,228,524	-		LRK54_RS05685	0.78	-2.8
1,228,524	-		LRK54_RS05685	0.78	-2.1
1,228,524	-		LRK54_RS05685	0.78	-2.7
1,228,524	-		LRK54_RS05685	0.78	-2.9
1,228,524	-		LRK54_RS05685	0.78	-2.7
1,228,700	+				-3.3
1,228,700	+				-1.2
1,228,700	+				-0.2
1,228,700	+				-4.1
1,228,700	+				-2.8
1,228,700	+				-1.8
1,228,700	+				-1.6
1,228,700	+				-1.4
1,228,700	+				-1.8
1,228,700	+				-3.1
1,228,700	+				-2.8
1,228,700	+				-2.9
1,228,700	+				-2.5
1,228,700	+				-0.8
1,228,700	+				-0.8
1,228,700	+				-0.2
1,228,700	+				-3.0
1,228,700	+				-2.8
1,228,700	+				-1.2
1,228,700	+				-1.2
1,228,700	+				-3.0
1,228,700	+				-1.2
1,228,700	+				-2.9
1,228,700	+				-3.3
1,228,700	+				-5.0
1,228,700	+				-2.5
1,228,700	+				-3.0
1,228,700	+				-0.2
1,228,700	+				-2.0
1,228,700	+				-2.5
1,228,700	+				-3.8
1,228,700	+				-3.1
1,228,700	+				-1.8
1,228,700	+				-1.2
1,228,700	+				-3.5
1,228,700	+				-2.5
1,228,700	+				-3.0
1,228,701	-				-0.2
1,228,701	-				-2.6
1,228,701	-				-2.5
1,228,701	-				-3.3
1,228,701	-				-2.3
1,228,701	-				-2.0
1,228,701	-				-2.7
1,228,701	-				-0.8
1,228,701	-				-1.6
1,228,701	-				-1.5
1,228,701	-				-1.5
1,228,701	-				-2.2
1,228,701	-				-2.4
1,228,701	-				-1.5
1,228,701	-				-3.3
1,228,701	-				-2.8
1,228,701	-				-2.2
1,228,701	-				-0.8
1,228,701	-				-3.4
1,228,701	-				-3.4
1,228,701	-				-0.2
1,228,701	-				-1.9
1,228,701	-				-1.2
1,228,701	-				-3.9
1,228,701	-				-2.5
1,228,701	-				-2.5
1,228,701	-				-2.6
1,228,701	-				-1.2
1,228,701	-				-0.2
1,228,701	-				-0.8
1,228,701	-				-1.5
1,228,701	-				-3.3
1,228,701	-				-1.8
1,228,701	-				-3.5
1,228,701	-				-3.0
1,228,701	-				-3.0
1,228,701	-				-5.0
1,228,701	-				-4.5
1,228,701	-				-3.1
1,228,701	-				-2.3
1,228,701	-				-2.4
1,228,701	-				-4.0
1,228,781	+				-4.3
1,228,781	+				-0.8
1,228,781	+				-0.2
1,228,781	+				-2.7
1,228,781	+				+1.4
1,228,781	+				-2.9
1,228,781	+				-1.5
1,228,781	+				-2.8
1,228,781	+				-1.9
1,228,781	+				-3.7
1,228,781	+				-2.0
1,228,781	+				-1.5
1,228,781	+				-3.0
1,228,781	+				-2.0
1,228,781	+				-2.5
1,228,781	+				-2.9
1,228,781	+				-2.1
1,228,781	+				-1.5
1,228,781	+				-4.8
1,228,781	+				-0.8
1,228,782	-				-0.8
1,228,782	-				-4.0
1,228,782	-				+0.8
1,228,782	-				-3.2
1,228,782	-				-1.8
1,228,782	-				-1.8
1,228,782	-				-3.7
1,228,782	-				-3.8
1,228,782	-				-2.5
1,228,782	-				-2.9
1,228,782	-				-2.7
1,228,782	-				-0.8
1,228,782	-				-1.9
1,228,782	-				-0.4
1,228,782	-				-2.4
1,228,782	-				-2.8
1,228,782	-				-1.2
1,228,808	+				+0.2
1,228,809	-				-0.4
1,228,809	-				-2.5
1,228,820	+				+0.4
1,228,820	+				-0.4
1,228,821	-				+0.4
1,228,821	-				-1.2
1,228,821	-				-0.0
1,228,821	-				-0.6
1,229,287	+		LRK54_RS05690	0.13	-0.4
1,229,288	-		LRK54_RS05690	0.13	-0.1
1,229,288	-		LRK54_RS05690	0.13	-0.8
1,229,288	-		LRK54_RS05690	0.13	-0.1
1,229,582	+		LRK54_RS05690	0.24	-1.6
1,229,582	+		LRK54_RS05690	0.24	-1.6
1,229,608	+		LRK54_RS05690	0.25	-0.0
1,229,608	+		LRK54_RS05690	0.25	+1.4
1,229,608	+		LRK54_RS05690	0.25	-0.6
1,229,608	+		LRK54_RS05690	0.25	+0.4
1,229,608	+		LRK54_RS05690	0.25	-0.5
1,229,608	+		LRK54_RS05690	0.25	+0.4
1,229,608	+		LRK54_RS05690	0.25	-0.5
1,229,608	+		LRK54_RS05690	0.25	-0.9
1,229,608	+		LRK54_RS05690	0.25	+0.3
1,229,608	+		LRK54_RS05690	0.25	-1.2
1,229,609	-		LRK54_RS05690	0.25	-0.6
1,229,609	-		LRK54_RS05690	0.25	-1.0
1,229,609	-		LRK54_RS05690	0.25	+0.4
1,229,609	-		LRK54_RS05690	0.25	-0.5
1,229,609	-		LRK54_RS05690	0.25	-1.8
1,229,609	-		LRK54_RS05690	0.25	-0.1
1,229,609	-		LRK54_RS05690	0.25	-1.9
1,229,609	-		LRK54_RS05690	0.25	+2.8
1,229,609	-		LRK54_RS05690	0.25	+0.2