Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS05670

Experiment: R2A with SpecU metal mix 1 X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with SpecU metal mix 1 X
1,223,809	-		LRK54_RS05665	0.12	-0.2
1,224,043	-		LRK54_RS05665	0.34	-0.2
1,224,111	+		LRK54_RS05665	0.40	-0.5
1,224,111	+		LRK54_RS05665	0.40	+0.8
1,224,111	+		LRK54_RS05665	0.40	+0.8
1,224,111	+		LRK54_RS05665	0.40	+0.4
1,224,111	+		LRK54_RS05665	0.40	-0.2
1,224,112	-		LRK54_RS05665	0.40	+0.8
1,224,112	-		LRK54_RS05665	0.40	+1.3
1,224,112	-		LRK54_RS05665	0.40	+0.8
1,224,112	-		LRK54_RS05665	0.40	+0.8
1,224,112	-		LRK54_RS05665	0.40	-2.2
1,224,112	-		LRK54_RS05665	0.40	+0.8
1,224,112	-		LRK54_RS05665	0.40	+0.8
1,224,112	-		LRK54_RS05665	0.40	-0.8
1,224,224	+		LRK54_RS05665	0.51	-0.8
1,224,224	+		LRK54_RS05665	0.51	+2.8
1,224,224	+		LRK54_RS05665	0.51	+1.8
1,224,224	+		LRK54_RS05665	0.51	+0.8
1,224,224	+		LRK54_RS05665	0.51	-0.8
1,224,225	-		LRK54_RS05665	0.51	+0.8
1,224,225	-		LRK54_RS05665	0.51	+0.8
1,224,225	-		LRK54_RS05665	0.51	+0.5
1,224,225	-		LRK54_RS05665	0.51	+0.8
1,224,229	-		LRK54_RS05665	0.51	+1.1
1,224,229	-		LRK54_RS05665	0.51	+2.8
1,224,229	-		LRK54_RS05665	0.51	+1.0
1,224,267	+		LRK54_RS05665	0.55	-0.5
1,224,268	-		LRK54_RS05665	0.55	-0.5
1,224,268	-		LRK54_RS05665	0.55	-1.4
1,224,276	+		LRK54_RS05665	0.55	-0.5
1,224,346	-		LRK54_RS05665	0.62	+1.8
1,224,441	+		LRK54_RS05665	0.71	+2.1
1,224,441	+		LRK54_RS05665	0.71	+1.8
1,224,442	-		LRK54_RS05665	0.71	+0.8
1,224,442	-		LRK54_RS05665	0.71	+1.8
1,224,442	-		LRK54_RS05665	0.71	-0.8
1,224,442	-		LRK54_RS05665	0.71	-0.4
1,224,558	+		LRK54_RS05665	0.82	+1.8
1,224,558	+		LRK54_RS05665	0.82	-0.2
1,224,558	+		LRK54_RS05665	0.82	-1.8
1,224,558	+		LRK54_RS05665	0.82	-0.5
1,224,559	-		LRK54_RS05665	0.82	+0.2
1,224,559	-		LRK54_RS05665	0.82	-2.2
1,224,682	-				+1.4
1,224,682	-				+1.8
1,224,682	-				+1.6
1,224,682	-				+0.8
1,224,726	+				-2.0
1,224,726	+				-1.5
1,224,726	+				-0.9
1,224,726	+				+0.8
1,224,727	-				+0.8
1,224,727	-				-1.0
1,224,727	-				-1.5
1,224,875	+		LRK54_RS05670	0.11	+1.4
1,224,875	+		LRK54_RS05670	0.11	+0.8
1,224,875	+		LRK54_RS05670	0.11	+2.6
1,224,875	+		LRK54_RS05670	0.11	-0.8
1,224,876	-		LRK54_RS05670	0.11	+1.0
1,224,893	+		LRK54_RS05670	0.13	+1.9
1,224,893	+		LRK54_RS05670	0.13	+1.6
1,224,893	+		LRK54_RS05670	0.13	+2.4
1,224,893	+		LRK54_RS05670	0.13	-2.0
1,224,893	+		LRK54_RS05670	0.13	-0.4
1,224,893	+		LRK54_RS05670	0.13	+0.5
1,224,893	+		LRK54_RS05670	0.13	-0.8
1,224,893	+		LRK54_RS05670	0.13	-0.8
1,224,894	-		LRK54_RS05670	0.13	-0.2
1,224,894	-		LRK54_RS05670	0.13	-0.8
1,224,894	-		LRK54_RS05670	0.13	-0.4
1,224,894	-		LRK54_RS05670	0.13	-1.2
1,224,894	-		LRK54_RS05670	0.13	-0.8
1,225,124	+		LRK54_RS05670	0.39	+1.4
1,225,124	+		LRK54_RS05670	0.39	+0.8
1,225,200	+		LRK54_RS05670	0.47	-0.5
1,225,200	+		LRK54_RS05670	0.47	+0.5
1,225,292	+		LRK54_RS05670	0.58	-0.8
1,225,292	+		LRK54_RS05670	0.58	+0.8
1,225,310	+		LRK54_RS05670	0.60	+2.8
1,225,310	+		LRK54_RS05670	0.60	-0.2
1,225,310	+		LRK54_RS05670	0.60	-0.8
1,225,310	+		LRK54_RS05670	0.60	-0.2
1,225,310	+		LRK54_RS05670	0.60	+0.8
1,225,310	+		LRK54_RS05670	0.60	+1.2
1,225,311	-		LRK54_RS05670	0.60	-0.2
1,225,311	-		LRK54_RS05670	0.60	-0.8
1,225,311	-		LRK54_RS05670	0.60	-0.8
1,225,316	+		LRK54_RS05670	0.60	-1.5
1,225,316	+		LRK54_RS05670	0.60	-0.8
1,225,316	+		LRK54_RS05670	0.60	-1.4
1,225,316	+		LRK54_RS05670	0.60	-0.8
1,225,316	+		LRK54_RS05670	0.60	-0.8
1,225,317	-		LRK54_RS05670	0.60	-2.2
1,225,401	-		LRK54_RS05670	0.70	+3.9
1,225,401	-		LRK54_RS05670	0.70	+1.8
1,225,401	-		LRK54_RS05670	0.70	+1.4
1,225,496	+		LRK54_RS05670	0.80	+0.8
1,225,496	+		LRK54_RS05670	0.80	-1.9
1,225,496	+		LRK54_RS05670	0.80	+0.8
1,225,496	+		LRK54_RS05670	0.80	+0.2
1,225,496	+		LRK54_RS05670	0.80	+0.8
1,225,497	-		LRK54_RS05670	0.81	+1.5
1,225,497	-		LRK54_RS05670	0.81	-1.5
1,225,497	-		LRK54_RS05670	0.81	+2.1
1,225,497	-		LRK54_RS05670	0.81	+0.0
1,225,497	-		LRK54_RS05670	0.81	+0.2
1,225,497	-		LRK54_RS05670	0.81	-1.2
1,225,556	+		LRK54_RS05670	0.87	+1.2
1,225,632	-				+2.4
1,226,212	+				+0.4
1,226,212	+				-0.1
1,226,212	+				-1.5
1,226,212	+				+0.0
1,226,212	+				-2.7
1,226,212	+				+0.5
1,226,212	+				-1.6
1,226,212	+				+0.6
1,226,212	+				+0.8
1,226,212	+				+0.0
1,226,212	+				-0.2
1,226,212	+				-0.3
1,226,213	-				-2.2
1,226,213	-				+0.8
1,226,213	-				+0.1
1,226,213	-				-1.2
1,226,213	-				+0.8
1,226,213	-				+0.8
1,226,213	-				-0.6