Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS05630

Experiment: R2A with SpecU metal mix 1 X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with SpecU metal mix 1 X
1,212,266	-				+0.0
1,212,266	-				-0.4
1,212,266	-				+0.5
1,212,266	-				-0.7
1,213,188	+		LRK54_RS05630	0.46	+0.2
1,213,188	+		LRK54_RS05630	0.46	-1.4
1,213,188	+		LRK54_RS05630	0.46	-0.8
1,213,188	+		LRK54_RS05630	0.46	-0.8
1,213,188	+		LRK54_RS05630	0.46	-1.6
1,213,188	+		LRK54_RS05630	0.46	-3.0
1,213,188	+		LRK54_RS05630	0.46	-1.8
1,213,188	+		LRK54_RS05630	0.46	-0.8
1,213,188	+		LRK54_RS05630	0.46	-1.2
1,213,188	+		LRK54_RS05630	0.46	-2.1
1,213,189	-		LRK54_RS05630	0.46	-1.8
1,213,189	-		LRK54_RS05630	0.46	-1.2
1,213,189	-		LRK54_RS05630	0.46	-0.8
1,213,189	-		LRK54_RS05630	0.46	-3.0
1,213,189	-		LRK54_RS05630	0.46	-2.0
1,213,234	+		LRK54_RS05630	0.54	-1.5
1,213,234	+		LRK54_RS05630	0.54	-2.2
1,213,234	+		LRK54_RS05630	0.54	-2.4
1,213,234	+		LRK54_RS05630	0.54	-3.4
1,213,234	+		LRK54_RS05630	0.54	-1.0
1,213,234	+		LRK54_RS05630	0.54	-1.8
1,213,234	+		LRK54_RS05630	0.54	-0.8
1,213,234	+		LRK54_RS05630	0.54	-0.8
1,213,234	+		LRK54_RS05630	0.54	-0.8
1,213,235	-		LRK54_RS05630	0.55	-1.6
1,213,235	-		LRK54_RS05630	0.55	-0.2
1,213,235	-		LRK54_RS05630	0.55	-1.7
1,213,235	-		LRK54_RS05630	0.55	-1.2
1,213,235	-		LRK54_RS05630	0.55	-1.6
1,213,235	-		LRK54_RS05630	0.55	-1.6
1,213,240	+		LRK54_RS05630	0.56	-1.6
1,213,241	-		LRK54_RS05630	0.56	-2.1
1,213,247	-		LRK54_RS05630	0.57	-1.2
1,213,318	+		LRK54_RS05630	0.70	-1.6
1,213,319	-		LRK54_RS05630	0.70	-0.8
1,213,319	-		LRK54_RS05630	0.70	-2.0
1,213,319	-		LRK54_RS05630	0.70	-1.2
1,213,319	-		LRK54_RS05630	0.70	-2.2
1,213,321	+		LRK54_RS05630	0.71	-2.9
1,213,321	+		LRK54_RS05630	0.71	-0.2
1,213,321	+		LRK54_RS05630	0.71	-2.0
1,213,322	-		LRK54_RS05630	0.71	-0.6
1,213,322	-		LRK54_RS05630	0.71	-2.2
1,213,322	-		LRK54_RS05630	0.71	-1.6
1,213,322	-		LRK54_RS05630	0.71	+0.8
1,213,322	-		LRK54_RS05630	0.71	+1.2
1,213,322	-		LRK54_RS05630	0.71	-1.8
1,213,463	+				-1.2
1,213,485	+				-1.4
1,213,485	+				-2.2
1,213,485	+				-0.8
1,213,485	+				-0.8
1,213,486	-				-2.6
1,213,486	-				-0.8
1,213,486	-				-0.8
1,213,486	-				-1.6
1,213,486	-				-1.9
1,213,486	-				-1.2
1,213,486	-				-1.7
1,213,532	+				+1.8
1,213,532	+				-0.8
1,213,532	+				-2.3
1,213,532	+				+0.8
1,213,532	+				-1.6
1,213,532	+				-1.0
1,213,532	+				-1.7
1,213,532	+				-1.6
1,213,532	+				-1.4
1,213,532	+				-0.7
1,213,533	-				-1.1
1,213,533	-				+0.2
1,213,533	-				-0.0
1,213,533	-				+0.8
1,213,533	-				-0.8
1,213,533	-				+0.3
1,213,533	-				-2.0
1,213,533	-				+0.1
1,213,533	-				-0.6
1,213,561	+				-1.1
1,213,562	-				-0.7
1,213,950	+		LRK54_RS05635	0.41	+2.3
1,213,950	+		LRK54_RS05635	0.41	-1.3
1,213,951	-		LRK54_RS05635	0.41	-1.0
1,213,951	-		LRK54_RS05635	0.41	+0.8
1,213,951	-		LRK54_RS05635	0.41	-1.8
1,213,951	-		LRK54_RS05635	0.41	-2.0
1,213,951	-		LRK54_RS05635	0.41	-1.2
1,213,951	-		LRK54_RS05635	0.41	-2.7
1,213,951	-		LRK54_RS05635	0.41	-3.8
1,213,951	-		LRK54_RS05635	0.41	-1.2
1,213,951	-		LRK54_RS05635	0.41	-0.8
1,213,951	-		LRK54_RS05635	0.41	-1.5
1,213,951	-		LRK54_RS05635	0.41	-0.8
1,213,951	-		LRK54_RS05635	0.41	-2.8
1,213,951	-		LRK54_RS05635	0.41	-0.2
1,213,951	-		LRK54_RS05635	0.41	-0.8
1,213,951	-		LRK54_RS05635	0.41	-0.2
1,213,951	-		LRK54_RS05635	0.41	-1.7
1,214,031	+		LRK54_RS05635	0.49	-0.8
1,214,031	+		LRK54_RS05635	0.49	-0.9
1,214,031	+		LRK54_RS05635	0.49	-0.8
1,214,031	+		LRK54_RS05635	0.49	-1.8
1,214,032	-		LRK54_RS05635	0.49	-1.6
1,214,032	-		LRK54_RS05635	0.49	-1.3
1,214,070	+		LRK54_RS05635	0.53	-0.1
1,214,121	+		LRK54_RS05635	0.58	+0.8
1,214,121	+		LRK54_RS05635	0.58	+0.8
1,214,121	+		LRK54_RS05635	0.58	-1.6
1,214,121	+		LRK54_RS05635	0.58	-1.0
1,214,121	+		LRK54_RS05635	0.58	-0.8
1,214,122	-		LRK54_RS05635	0.58	-1.8
1,214,122	-		LRK54_RS05635	0.58	-1.1
1,214,122	-		LRK54_RS05635	0.58	+2.3
1,214,122	-		LRK54_RS05635	0.58	-0.1
1,214,142	+		LRK54_RS05635	0.60	-1.2
1,214,142	+		LRK54_RS05635	0.60	-0.2
1,214,142	+		LRK54_RS05635	0.60	-2.7
1,214,142	+		LRK54_RS05635	0.60	-0.2
1,214,142	+		LRK54_RS05635	0.60	-3.1
1,214,143	-		LRK54_RS05635	0.60	-0.8
1,214,143	-		LRK54_RS05635	0.60	-2.2
1,214,143	-		LRK54_RS05635	0.60	-0.2
1,214,283	+		LRK54_RS05635	0.73	-0.2
1,214,283	+		LRK54_RS05635	0.73	-1.1
1,214,284	-		LRK54_RS05635	0.73	-1.8
1,214,284	-		LRK54_RS05635	0.73	-3.4
1,214,284	-		LRK54_RS05635	0.73	-2.2
1,214,304	+		LRK54_RS05635	0.75	-0.2
1,214,304	+		LRK54_RS05635	0.75	-0.5
1,214,304	+		LRK54_RS05635	0.75	-2.7
1,214,304	+		LRK54_RS05635	0.75	-1.0
1,214,305	-		LRK54_RS05635	0.75	-0.2
1,214,305	-		LRK54_RS05635	0.75	-1.5
1,214,305	-		LRK54_RS05635	0.75	-2.3
1,214,305	-		LRK54_RS05635	0.75	-1.1
1,214,305	-		LRK54_RS05635	0.75	-0.2
1,214,314	+		LRK54_RS05635	0.76	-2.9
1,214,315	-		LRK54_RS05635	0.76	-1.0
1,214,315	-		LRK54_RS05635	0.76	-0.8
1,214,436	+		LRK54_RS05635	0.88	-0.8
1,214,436	+		LRK54_RS05635	0.88	-1.2
1,214,437	-		LRK54_RS05635	0.88	-1.2
1,214,437	-		LRK54_RS05635	0.88	-0.5
1,214,437	-		LRK54_RS05635	0.88	-1.8
1,214,443	-		LRK54_RS05635	0.89	-1.1