Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS05495

Experiment: R2A with SpecU metal mix 1 X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with SpecU metal mix 1 X
1,186,305	+		LRK54_RS05490	0.73	-0.5
1,186,305	+		LRK54_RS05490	0.73	+1.8
1,186,306	-		LRK54_RS05490	0.73	+0.3
1,186,306	-		LRK54_RS05490	0.73	-0.7
1,186,306	-		LRK54_RS05490	0.73	-1.4
1,186,561	+				+1.8
1,186,561	+				-1.8
1,186,561	+				-0.2
1,186,561	+				+0.0
1,186,562	-				-1.5
1,186,568	+				-0.0
1,186,568	+				-0.6
1,186,568	+				-1.6
1,186,568	+				+0.8
1,186,568	+				+0.8
1,186,568	+				+0.6
1,186,568	+				-0.4
1,186,568	+				+0.5
1,186,568	+				+1.0
1,186,568	+				-0.5
1,186,568	+				+0.5
1,186,568	+				+0.0
1,186,568	+				-0.0
1,186,568	+				-2.7
1,186,568	+				+1.2
1,186,568	+				+1.5
1,186,568	+				+0.8
1,186,568	+				+0.4
1,186,568	+				-0.3
1,186,568	+				+0.2
1,186,568	+				+0.0
1,186,568	+				+0.5
1,186,568	+				-0.7
1,186,568	+				-0.8
1,186,568	+				-2.1
1,186,568	+				+0.2
1,186,568	+				+0.3
1,186,568	+				+2.1
1,186,568	+				+0.5
1,186,568	+				+0.6
1,186,568	+				-1.2
1,186,568	+				-0.1
1,186,568	+				-0.6
1,186,568	+				+0.8
1,186,568	+				-0.5
1,186,568	+				-0.2
1,186,568	+				+0.7
1,186,568	+				-1.2
1,186,568	+				+0.1
1,186,568	+				-0.7
1,186,568	+				-0.2
1,186,568	+				-0.2
1,186,568	+				-0.8
1,186,568	+				+0.5
1,186,568	+				-1.2
1,186,568	+				-0.1
1,186,568	+				+0.5
1,186,568	+				+1.1
1,186,568	+				+1.0
1,186,568	+				+0.2
1,186,569	-				+0.0
1,186,569	-				+0.4
1,186,569	-				-0.2
1,186,569	-				-2.0
1,186,569	-				-0.1
1,186,569	-				-0.5
1,186,569	-				-0.1
1,186,569	-				-0.3
1,186,569	-				-0.6
1,186,569	-				-0.6
1,186,569	-				+1.5
1,186,569	-				+0.3
1,186,569	-				-2.2
1,186,569	-				-0.0
1,186,569	-				+0.5
1,186,569	-				+0.3
1,186,569	-				-0.2
1,186,569	-				-0.1
1,186,569	-				+1.1
1,186,569	-				-0.1
1,186,569	-				-1.3
1,186,569	-				-1.0
1,186,569	-				-1.1
1,186,569	-				+1.7
1,186,569	-				-1.0
1,186,569	-				+0.2
1,186,569	-				-0.8
1,186,569	-				-0.7
1,186,569	-				+0.0
1,186,569	-				-0.9
1,186,569	-				-3.0
1,186,569	-				-1.0
1,186,569	-				+1.2
1,186,569	-				-0.6
1,186,569	-				+0.2
1,186,569	-				+0.1
1,186,569	-				-0.4
1,186,569	-				-0.3
1,186,569	-				-0.3
1,186,569	-				-1.1
1,186,569	-				+0.4
1,186,569	-				-0.2
1,186,569	-				+0.6
1,186,569	-				+2.1
1,186,569	-				-0.6
1,186,569	-				+0.6
1,186,569	-				-1.5
1,186,569	-				-0.2
1,186,569	-				-0.6
1,186,569	-				-1.2
1,186,569	-				-0.0
1,186,569	-				-0.7
1,186,569	-				-0.4
1,186,569	-				-0.7
1,186,572	+				-0.1
1,186,572	+				-0.0
1,186,572	+				-1.6
1,186,572	+				+0.0
1,186,572	+				+0.8
1,186,572	+				-0.3
1,186,572	+				+0.3
1,186,572	+				-1.2
1,186,572	+				-0.1
1,186,572	+				+0.4
1,186,572	+				+0.5
1,186,573	-				+3.3
1,186,573	-				+0.8
1,186,573	-				-0.3
1,186,573	-				+0.8
1,186,573	-				-0.7
1,186,573	-				-0.0
1,186,573	-				-0.7
1,186,573	-				-0.7
1,186,573	-				+0.2
1,186,573	-				-1.3
1,186,573	-				-1.6
1,186,611	-				+0.8
1,186,611	-				+0.3
1,186,611	-				-0.4
1,186,686	+				+1.5
1,186,686	+				+0.9
1,186,686	+				+0.0
1,186,686	+				+0.5
1,186,686	+				+1.3
1,186,686	+				-2.1
1,186,686	+				+0.2
1,186,687	-				-0.2
1,186,687	-				-0.2
1,186,687	-				-0.3
1,186,687	-				+1.1
1,186,687	-				+0.8
1,186,687	-				+0.1
1,186,687	-				+1.6
1,186,687	-				-1.8
1,186,687	-				-0.6
1,186,687	-				+0.3
1,186,841	+				+0.4
1,186,841	+				-0.6
1,186,841	+				-1.4
1,186,841	+				+0.8
1,186,842	-				+0.8
1,186,947	+				-0.7
1,186,947	+				+0.8
1,186,947	+				+1.8
1,186,947	+				+0.2
1,186,947	+				-1.2
1,186,947	+				-1.3
1,186,947	+				-0.9
1,186,947	+				+0.3
1,186,947	+				-1.5
1,186,947	+				-2.0
1,186,947	+				+2.3
1,186,947	+				-2.2
1,186,948	-				+0.8
1,186,948	-				+0.8
1,186,948	-				+2.6
1,186,948	-				+0.5
1,186,948	-				+1.3
1,186,948	-				+0.8
1,186,972	+				+1.8
1,186,972	+				+1.0
1,186,972	+				-0.9
1,186,972	+				+1.2
1,186,972	+				+0.6
1,186,972	+				+0.2
1,186,973	-				+1.1
1,186,973	-				-0.2
1,186,973	-				-0.9
1,186,973	-				-1.3
1,186,973	-				-0.2
1,186,973	-				-1.2
1,186,973	-				+1.1
1,186,973	-				-2.0
1,186,973	-				+0.5
1,187,315	+		LRK54_RS05495	0.15	-2.0
1,187,315	+		LRK54_RS05495	0.15	-0.2
1,187,316	-		LRK54_RS05495	0.16	-1.4
1,187,316	-		LRK54_RS05495	0.16	-1.2
1,187,316	-		LRK54_RS05495	0.16	-2.7
1,187,358	-		LRK54_RS05495	0.34	-1.7
1,187,358	-		LRK54_RS05495	0.34	-1.0
1,187,449	-		LRK54_RS05495	0.74	-0.7
1,187,449	-		LRK54_RS05495	0.74	+0.2
1,187,449	-		LRK54_RS05495	0.74	+0.8
1,187,449	-		LRK54_RS05495	0.74	-1.1
1,187,479	+		LRK54_RS05495	0.87	-0.7
1,187,479	+		LRK54_RS05495	0.87	+0.2
1,187,479	+		LRK54_RS05495	0.87	-1.7
1,187,479	+		LRK54_RS05495	0.87	-2.8
1,187,479	+		LRK54_RS05495	0.87	-0.2
1,187,479	+		LRK54_RS05495	0.87	+0.0
1,187,480	-		LRK54_RS05495	0.88	+1.2
1,187,480	-		LRK54_RS05495	0.88	-1.6
1,187,480	-		LRK54_RS05495	0.88	-1.0
1,187,480	-		LRK54_RS05495	0.88	-3.6
1,187,481	-		LRK54_RS05495	0.88	-0.2
1,187,508	-				+0.5
1,187,508	-				-0.8
1,187,540	+				-1.5
1,187,540	+				-0.8
1,187,541	-				-1.1
1,187,664	-		LRK54_RS05500	0.25	-0.6
1,187,726	-		LRK54_RS05500	0.39	-0.6
1,188,149	+				-1.3
1,188,149	+				-0.2
1,188,149	+				+0.2
1,188,150	-				-0.6
1,188,150	-				-0.5
1,188,302	+		LRK54_RS05505	0.46	-1.6
1,188,302	+		LRK54_RS05505	0.46	+1.7
1,188,302	+		LRK54_RS05505	0.46	+0.2
1,188,302	+		LRK54_RS05505	0.46	-1.6
1,188,302	+		LRK54_RS05505	0.46	-0.2
1,188,302	+		LRK54_RS05505	0.46	-1.2
1,188,302	+		LRK54_RS05505	0.46	+1.8
1,188,302	+		LRK54_RS05505	0.46	+0.2
1,188,302	+		LRK54_RS05505	0.46	+0.3
1,188,302	+		LRK54_RS05505	0.46	-0.2
1,188,302	+		LRK54_RS05505	0.46	+0.4
1,188,302	+		LRK54_RS05505	0.46	+0.4
1,188,302	+		LRK54_RS05505	0.46	-0.6
1,188,302	+		LRK54_RS05505	0.46	-1.2
1,188,302	+		LRK54_RS05505	0.46	+1.1
1,188,302	+		LRK54_RS05505	0.46	+0.3
1,188,302	+		LRK54_RS05505	0.46	+0.2
1,188,302	+		LRK54_RS05505	0.46	+0.3
1,188,303	-		LRK54_RS05505	0.47	-0.1
1,188,303	-		LRK54_RS05505	0.47	+0.2
1,188,303	-		LRK54_RS05505	0.47	+0.4
1,188,303	-		LRK54_RS05505	0.47	-0.8
1,188,303	-		LRK54_RS05505	0.47	+0.1
1,188,303	-		LRK54_RS05505	0.47	-0.4
1,188,303	-		LRK54_RS05505	0.47	+0.2
1,188,303	-		LRK54_RS05505	0.47	+0.4
1,188,303	-		LRK54_RS05505	0.47	+0.0
1,188,303	-		LRK54_RS05505	0.47	+0.3
1,188,303	-		LRK54_RS05505	0.47	-0.3
1,188,303	-		LRK54_RS05505	0.47	+0.3
1,188,303	-		LRK54_RS05505	0.47	-0.2
1,188,303	-		LRK54_RS05505	0.47	+2.6
1,188,303	-		LRK54_RS05505	0.47	+0.8
1,188,303	-		LRK54_RS05505	0.47	-0.8
1,188,303	-		LRK54_RS05505	0.47	+0.8
1,188,303	-		LRK54_RS05505	0.47	+0.0
1,188,389	+		LRK54_RS05505	0.68	-1.8
1,188,389	+		LRK54_RS05505	0.68	+0.1
1,188,389	+		LRK54_RS05505	0.68	-0.3
1,188,389	+		LRK54_RS05505	0.68	+0.2
1,188,390	-		LRK54_RS05505	0.69	+0.5
1,188,390	-		LRK54_RS05505	0.69	-0.2
1,188,390	-		LRK54_RS05505	0.69	+0.4
1,188,390	-		LRK54_RS05505	0.69	+0.4
1,188,390	-		LRK54_RS05505	0.69	+0.5
1,188,390	-		LRK54_RS05505	0.69	+0.4