Experiment: R2A with SpecU metal mix 1 X
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK54_RS04910 and LRK54_RS04915 overlap by 4 nucleotides LRK54_RS04915 and LRK54_RS04920 are separated by 139 nucleotides LRK54_RS04920 and LRK54_RS04925 are separated by 98 nucleotides LRK54_RS04925 and LRK54_RS04930 are separated by 40 nucleotides
LRK54_RS04910: LRK54_RS04910 - Holliday junction branch migration protein RuvA, at 1,041,100 to 1,041,696
_RS04910
LRK54_RS04915: LRK54_RS04915 - crossover junction endodeoxyribonuclease RuvC, at 1,041,693 to 1,042,211
_RS04915
LRK54_RS04920: LRK54_RS04920 - YebC/PmpR family DNA-binding transcriptional regulator, at 1,042,351 to 1,043,079
_RS04920
LRK54_RS04925: LRK54_RS04925 - alpha/beta hydrolase, at 1,043,178 to 1,043,813
_RS04925
LRK54_RS04930: LRK54_RS04930 - aspartate--tRNA ligase, at 1,043,854 to 1,045,626
_RS04930
Position (kb)
1042
1043
1044 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 1041.591 kb on - strand, within LRK54_RS04910 at 1041.905 kb on - strand, within LRK54_RS04915 at 1041.905 kb on - strand, within LRK54_RS04915 at 1041.905 kb on - strand, within LRK54_RS04915 at 1041.905 kb on - strand, within LRK54_RS04915 at 1042.318 kb on + strand at 1042.318 kb on + strand at 1042.318 kb on + strand at 1042.319 kb on - strand at 1042.393 kb on + strand at 1042.393 kb on + strand at 1042.393 kb on + strand at 1042.393 kb on + strand at 1042.393 kb on + strand at 1042.393 kb on + strand at 1042.393 kb on + strand at 1042.393 kb on + strand at 1042.393 kb on + strand at 1042.393 kb on + strand at 1042.393 kb on + strand at 1042.393 kb on + strand at 1042.393 kb on + strand at 1042.393 kb on + strand at 1042.393 kb on + strand at 1042.394 kb on - strand at 1042.394 kb on - strand at 1042.394 kb on - strand at 1042.394 kb on - strand at 1042.394 kb on - strand at 1042.394 kb on - strand at 1042.394 kb on - strand at 1042.394 kb on - strand at 1042.394 kb on - strand at 1042.394 kb on - strand at 1042.394 kb on - strand at 1042.713 kb on + strand, within LRK54_RS04920 at 1042.713 kb on + strand, within LRK54_RS04920 at 1042.713 kb on + strand, within LRK54_RS04920 at 1042.713 kb on + strand, within LRK54_RS04920 at 1042.713 kb on + strand, within LRK54_RS04920 at 1042.713 kb on + strand, within LRK54_RS04920 at 1042.713 kb on + strand, within LRK54_RS04920 at 1042.713 kb on + strand, within LRK54_RS04920 at 1042.713 kb on + strand, within LRK54_RS04920 at 1042.713 kb on + strand, within LRK54_RS04920 at 1042.713 kb on + strand, within LRK54_RS04920 at 1042.713 kb on + strand, within LRK54_RS04920 at 1042.713 kb on + strand, within LRK54_RS04920 at 1042.713 kb on + strand, within LRK54_RS04920 at 1042.713 kb on + strand, within LRK54_RS04920 at 1042.714 kb on - strand, within LRK54_RS04920 at 1042.714 kb on - strand, within LRK54_RS04920 at 1042.714 kb on - strand, within LRK54_RS04920 at 1042.714 kb on - strand, within LRK54_RS04920 at 1042.714 kb on - strand, within LRK54_RS04920 at 1042.714 kb on - strand, within LRK54_RS04920 at 1042.714 kb on - strand, within LRK54_RS04920 at 1042.714 kb on - strand, within LRK54_RS04920 at 1042.714 kb on - strand, within LRK54_RS04920 at 1042.714 kb on - strand, within LRK54_RS04920 at 1042.714 kb on - strand, within LRK54_RS04920 at 1042.714 kb on - strand, within LRK54_RS04920 at 1042.714 kb on - strand, within LRK54_RS04920 at 1042.714 kb on - strand, within LRK54_RS04920 at 1042.714 kb on - strand, within LRK54_RS04920 at 1042.714 kb on - strand, within LRK54_RS04920 at 1042.714 kb on - strand, within LRK54_RS04920 at 1042.714 kb on - strand, within LRK54_RS04920 at 1042.714 kb on - strand, within LRK54_RS04920 at 1042.714 kb on - strand, within LRK54_RS04920 at 1042.745 kb on + strand, within LRK54_RS04920 at 1042.745 kb on + strand, within LRK54_RS04920 at 1042.745 kb on + strand, within LRK54_RS04920 at 1042.746 kb on - strand, within LRK54_RS04920 at 1042.764 kb on + strand, within LRK54_RS04920 at 1042.765 kb on - strand, within LRK54_RS04920 at 1042.830 kb on - strand, within LRK54_RS04920 at 1043.073 kb on + strand at 1043.073 kb on + strand at 1043.073 kb on + strand at 1043.073 kb on + strand at 1043.073 kb on + strand at 1043.073 kb on + strand at 1043.073 kb on + strand at 1043.074 kb on - strand at 1043.704 kb on + strand, within LRK54_RS04925 at 1043.704 kb on + strand, within LRK54_RS04925 at 1043.705 kb on - strand, within LRK54_RS04925 at 1043.705 kb on - strand, within LRK54_RS04925 at 1043.705 kb on - strand, within LRK54_RS04925 at 1043.705 kb on - strand, within LRK54_RS04925 at 1043.705 kb on - strand, within LRK54_RS04925 at 1043.705 kb on - strand, within LRK54_RS04925 at 1043.705 kb on - strand, within LRK54_RS04925 at 1043.819 kb on - strand at 1043.819 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with SpecU metal mix 1 X remove 1,041,591 - LRK54_RS04910 0.82 +0.7 1,041,905 - LRK54_RS04915 0.41 +0.7 1,041,905 - LRK54_RS04915 0.41 -0.6 1,041,905 - LRK54_RS04915 0.41 +0.7 1,041,905 - LRK54_RS04915 0.41 +0.7 1,042,318 + -0.1 1,042,318 + -0.3 1,042,318 + -0.4 1,042,319 - -1.6 1,042,393 + -0.3 1,042,393 + -3.2 1,042,393 + -1.9 1,042,393 + -2.6 1,042,393 + -1.8 1,042,393 + -1.6 1,042,393 + -1.2 1,042,393 + -0.6 1,042,393 + -2.7 1,042,393 + -1.8 1,042,393 + -0.3 1,042,393 + +0.7 1,042,393 + -1.6 1,042,393 + +0.3 1,042,393 + -1.4 1,042,394 - -1.4 1,042,394 - -2.4 1,042,394 - -2.2 1,042,394 - -0.8 1,042,394 - -0.8 1,042,394 - -0.5 1,042,394 - -2.8 1,042,394 - -3.0 1,042,394 - +0.7 1,042,394 - -1.5 1,042,394 - +1.2 1,042,713 + LRK54_RS04920 0.50 -2.4 1,042,713 + LRK54_RS04920 0.50 -1.6 1,042,713 + LRK54_RS04920 0.50 -2.6 1,042,713 + LRK54_RS04920 0.50 -1.6 1,042,713 + LRK54_RS04920 0.50 -0.8 1,042,713 + LRK54_RS04920 0.50 -1.6 1,042,713 + LRK54_RS04920 0.50 -1.2 1,042,713 + LRK54_RS04920 0.50 -0.8 1,042,713 + LRK54_RS04920 0.50 -1.8 1,042,713 + LRK54_RS04920 0.50 -1.6 1,042,713 + LRK54_RS04920 0.50 -0.8 1,042,713 + LRK54_RS04920 0.50 -2.3 1,042,713 + LRK54_RS04920 0.50 -1.8 1,042,713 + LRK54_RS04920 0.50 -3.5 1,042,713 + LRK54_RS04920 0.50 -0.3 1,042,714 - LRK54_RS04920 0.50 -1.1 1,042,714 - LRK54_RS04920 0.50 -1.3 1,042,714 - LRK54_RS04920 0.50 -0.4 1,042,714 - LRK54_RS04920 0.50 -1.8 1,042,714 - LRK54_RS04920 0.50 -1.4 1,042,714 - LRK54_RS04920 0.50 -0.9 1,042,714 - LRK54_RS04920 0.50 -2.8 1,042,714 - LRK54_RS04920 0.50 -1.4 1,042,714 - LRK54_RS04920 0.50 -1.7 1,042,714 - LRK54_RS04920 0.50 +0.2 1,042,714 - LRK54_RS04920 0.50 -0.7 1,042,714 - LRK54_RS04920 0.50 -0.3 1,042,714 - LRK54_RS04920 0.50 -1.0 1,042,714 - LRK54_RS04920 0.50 -3.0 1,042,714 - LRK54_RS04920 0.50 -0.5 1,042,714 - LRK54_RS04920 0.50 +0.5 1,042,714 - LRK54_RS04920 0.50 -1.8 1,042,714 - LRK54_RS04920 0.50 -2.0 1,042,714 - LRK54_RS04920 0.50 -0.3 1,042,714 - LRK54_RS04920 0.50 -1.9 1,042,745 + LRK54_RS04920 0.54 -1.6 1,042,745 + LRK54_RS04920 0.54 -2.4 1,042,745 + LRK54_RS04920 0.54 +2.1 1,042,746 - LRK54_RS04920 0.54 -1.0 1,042,764 + LRK54_RS04920 0.57 -1.8 1,042,765 - LRK54_RS04920 0.57 -0.8 1,042,830 - LRK54_RS04920 0.66 -1.3 1,043,073 + -0.8 1,043,073 + -0.8 1,043,073 + -1.2 1,043,073 + -2.6 1,043,073 + -2.8 1,043,073 + -1.3 1,043,073 + -1.6 1,043,074 - -0.2 1,043,704 + LRK54_RS04925 0.83 +0.5 1,043,704 + LRK54_RS04925 0.83 -0.2 1,043,705 - LRK54_RS04925 0.83 +0.2 1,043,705 - LRK54_RS04925 0.83 +0.7 1,043,705 - LRK54_RS04925 0.83 -0.2 1,043,705 - LRK54_RS04925 0.83 -1.4 1,043,705 - LRK54_RS04925 0.83 -1.4 1,043,705 - LRK54_RS04925 0.83 +0.4 1,043,705 - LRK54_RS04925 0.83 -2.3 1,043,819 - +0.4 1,043,819 - +0.6
Or see this region's nucleotide sequence