Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS04920

Experiment: R2A with SpecU metal mix 1 X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with SpecU metal mix 1 X
1,041,591	-		LRK54_RS04910	0.82	+0.7
1,041,905	-		LRK54_RS04915	0.41	+0.7
1,041,905	-		LRK54_RS04915	0.41	-0.6
1,041,905	-		LRK54_RS04915	0.41	+0.7
1,041,905	-		LRK54_RS04915	0.41	+0.7
1,042,318	+				-0.1
1,042,318	+				-0.3
1,042,318	+				-0.4
1,042,319	-				-1.6
1,042,393	+				-0.3
1,042,393	+				-3.2
1,042,393	+				-1.9
1,042,393	+				-2.6
1,042,393	+				-1.8
1,042,393	+				-1.6
1,042,393	+				-1.2
1,042,393	+				-0.6
1,042,393	+				-2.7
1,042,393	+				-1.8
1,042,393	+				-0.3
1,042,393	+				+0.7
1,042,393	+				-1.6
1,042,393	+				+0.3
1,042,393	+				-1.4
1,042,394	-				-1.4
1,042,394	-				-2.4
1,042,394	-				-2.2
1,042,394	-				-0.8
1,042,394	-				-0.8
1,042,394	-				-0.5
1,042,394	-				-2.8
1,042,394	-				-3.0
1,042,394	-				+0.7
1,042,394	-				-1.5
1,042,394	-				+1.2
1,042,713	+		LRK54_RS04920	0.50	-2.4
1,042,713	+		LRK54_RS04920	0.50	-1.6
1,042,713	+		LRK54_RS04920	0.50	-2.6
1,042,713	+		LRK54_RS04920	0.50	-1.6
1,042,713	+		LRK54_RS04920	0.50	-0.8
1,042,713	+		LRK54_RS04920	0.50	-1.6
1,042,713	+		LRK54_RS04920	0.50	-1.2
1,042,713	+		LRK54_RS04920	0.50	-0.8
1,042,713	+		LRK54_RS04920	0.50	-1.8
1,042,713	+		LRK54_RS04920	0.50	-1.6
1,042,713	+		LRK54_RS04920	0.50	-0.8
1,042,713	+		LRK54_RS04920	0.50	-2.3
1,042,713	+		LRK54_RS04920	0.50	-1.8
1,042,713	+		LRK54_RS04920	0.50	-3.5
1,042,713	+		LRK54_RS04920	0.50	-0.3
1,042,714	-		LRK54_RS04920	0.50	-1.1
1,042,714	-		LRK54_RS04920	0.50	-1.3
1,042,714	-		LRK54_RS04920	0.50	-0.4
1,042,714	-		LRK54_RS04920	0.50	-1.8
1,042,714	-		LRK54_RS04920	0.50	-1.4
1,042,714	-		LRK54_RS04920	0.50	-0.9
1,042,714	-		LRK54_RS04920	0.50	-2.8
1,042,714	-		LRK54_RS04920	0.50	-1.4
1,042,714	-		LRK54_RS04920	0.50	-1.7
1,042,714	-		LRK54_RS04920	0.50	+0.2
1,042,714	-		LRK54_RS04920	0.50	-0.7
1,042,714	-		LRK54_RS04920	0.50	-0.3
1,042,714	-		LRK54_RS04920	0.50	-1.0
1,042,714	-		LRK54_RS04920	0.50	-3.0
1,042,714	-		LRK54_RS04920	0.50	-0.5
1,042,714	-		LRK54_RS04920	0.50	+0.5
1,042,714	-		LRK54_RS04920	0.50	-1.8
1,042,714	-		LRK54_RS04920	0.50	-2.0
1,042,714	-		LRK54_RS04920	0.50	-0.3
1,042,714	-		LRK54_RS04920	0.50	-1.9
1,042,745	+		LRK54_RS04920	0.54	-1.6
1,042,745	+		LRK54_RS04920	0.54	-2.4
1,042,745	+		LRK54_RS04920	0.54	+2.1
1,042,746	-		LRK54_RS04920	0.54	-1.0
1,042,764	+		LRK54_RS04920	0.57	-1.8
1,042,765	-		LRK54_RS04920	0.57	-0.8
1,042,830	-		LRK54_RS04920	0.66	-1.3
1,043,073	+				-0.8
1,043,073	+				-0.8
1,043,073	+				-1.2
1,043,073	+				-2.6
1,043,073	+				-2.8
1,043,073	+				-1.3
1,043,073	+				-1.6
1,043,074	-				-0.2
1,043,704	+		LRK54_RS04925	0.83	+0.5
1,043,704	+		LRK54_RS04925	0.83	-0.2
1,043,705	-		LRK54_RS04925	0.83	+0.2
1,043,705	-		LRK54_RS04925	0.83	+0.7
1,043,705	-		LRK54_RS04925	0.83	-0.2
1,043,705	-		LRK54_RS04925	0.83	-1.4
1,043,705	-		LRK54_RS04925	0.83	-1.4
1,043,705	-		LRK54_RS04925	0.83	+0.4
1,043,705	-		LRK54_RS04925	0.83	-2.3
1,043,819	-				+0.4
1,043,819	-				+0.6