Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS04720

Experiment: R2A with SpecU metal mix 1 X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with SpecU metal mix 1 X
998,947	+				-1.3
999,015	+				+0.9
999,015	+				+0.7
999,015	+				-0.3
999,015	+				+0.3
999,015	+				-0.1
999,015	+				-0.3
999,015	+				-0.6
999,015	+				+0.4
999,015	+				+0.3
999,015	+				+0.1
999,015	+				+0.2
999,015	+				-0.3
999,015	+				+0.2
999,015	+				-0.7
999,015	+				+0.6
999,015	+				+0.6
999,015	+				-0.1
999,015	+				-0.0
999,015	+				+0.3
999,015	+				+0.4
999,015	+				-0.8
999,015	+				+0.5
999,015	+				+0.6
999,015	+				+1.2
999,015	+				+0.3
999,015	+				+1.8
999,016	-				+1.2
999,016	-				-0.5
999,016	-				+1.1
999,016	-				+2.0
999,016	-				+0.7
999,016	-				+1.3
999,016	-				+0.9
999,016	-				+1.2
999,016	-				+0.4
999,016	-				-2.1
999,016	-				+0.5
999,016	-				+0.5
999,016	-				-0.8
999,016	-				+1.0
999,016	-				-1.3
999,016	-				+0.9
999,016	-				-0.1
999,016	-				+0.7
999,016	-				+0.4
999,016	-				+0.7
999,016	-				+0.9
999,016	-				+0.2
999,016	-				+0.9
999,016	-				-1.3
999,016	-				-0.6
999,016	-				+0.4
999,174	+		LRK54_RS04715	0.12	-1.1
999,175	-		LRK54_RS04715	0.12	+0.3
999,175	-		LRK54_RS04715	0.12	+0.6
999,175	-		LRK54_RS04715	0.12	-1.6
999,342	+		LRK54_RS04715	0.35	+1.5
999,342	+		LRK54_RS04715	0.35	-1.6
999,342	+		LRK54_RS04715	0.35	+0.6
999,342	+		LRK54_RS04715	0.35	-0.2
999,342	+		LRK54_RS04715	0.35	+0.2
999,342	+		LRK54_RS04715	0.35	-0.8
999,343	-		LRK54_RS04715	0.35	-0.7
999,343	-		LRK54_RS04715	0.35	+0.2
999,343	-		LRK54_RS04715	0.35	+0.2
999,343	-		LRK54_RS04715	0.35	+0.7
999,552	+		LRK54_RS04715	0.63	-0.8
999,553	-		LRK54_RS04715	0.63	+0.3
999,673	+		LRK54_RS04715	0.79	-0.2
999,673	+		LRK54_RS04715	0.79	-0.7
999,674	-		LRK54_RS04715	0.79	-0.6
999,674	-		LRK54_RS04715	0.79	+1.1
999,674	-		LRK54_RS04715	0.79	-0.6
999,674	-		LRK54_RS04715	0.79	+0.1
999,674	-		LRK54_RS04715	0.79	+0.7
999,674	-		LRK54_RS04715	0.79	+1.7
999,674	-		LRK54_RS04715	0.79	-0.6
1,000,241	+				-1.8
1,000,241	+				-3.3
1,000,241	+				-1.6
1,000,242	-				-1.6
1,000,242	-				-2.3
1,000,242	-				-2.3
1,000,242	-				-2.3
1,000,333	+		LRK54_RS04720	0.12	-1.6
1,000,333	+		LRK54_RS04720	0.12	-3.2
1,000,333	+		LRK54_RS04720	0.12	+0.7
1,000,333	+		LRK54_RS04720	0.12	-0.3
1,000,334	-		LRK54_RS04720	0.12	-1.3
1,000,334	-		LRK54_RS04720	0.12	-0.3
1,000,334	-		LRK54_RS04720	0.12	-1.3
1,000,334	-		LRK54_RS04720	0.12	-0.8
1,000,334	-		LRK54_RS04720	0.12	+0.7
1,000,334	-		LRK54_RS04720	0.12	-1.3
1,000,391	+		LRK54_RS04720	0.14	-1.6
1,000,392	-		LRK54_RS04720	0.14	-0.3
1,000,392	-		LRK54_RS04720	0.14	-1.6
1,000,400	+		LRK54_RS04720	0.14	-1.3
1,000,400	+		LRK54_RS04720	0.14	-2.3
1,000,401	-		LRK54_RS04720	0.14	-1.3
1,000,401	-		LRK54_RS04720	0.14	-2.4
1,000,401	-		LRK54_RS04720	0.14	-1.8
1,000,401	-		LRK54_RS04720	0.14	+0.7
1,001,090	+		LRK54_RS04720	0.32	-2.3
1,001,090	+		LRK54_RS04720	0.32	-2.6
1,001,090	+		LRK54_RS04720	0.32	-0.3
1,001,091	-		LRK54_RS04720	0.32	-1.3
1,001,672	+		LRK54_RS04720	0.47	-2.4
1,001,673	-		LRK54_RS04720	0.47	-1.6
1,001,673	-		LRK54_RS04720	0.47	-1.8
1,001,673	-		LRK54_RS04720	0.47	-3.0
1,001,673	-		LRK54_RS04720	0.47	-2.1
1,001,808	+		LRK54_RS04720	0.50	-1.3
1,001,808	+		LRK54_RS04720	0.50	-0.3
1,001,809	-		LRK54_RS04720	0.50	-1.6
1,001,983	+		LRK54_RS04720	0.55	-1.6
1,001,984	-		LRK54_RS04720	0.55	-2.7
1,002,016	+		LRK54_RS04720	0.56	-0.3
1,002,023	+		LRK54_RS04720	0.56	+0.7
1,002,023	+		LRK54_RS04720	0.56	+0.7
1,002,092	+		LRK54_RS04720	0.58	-0.3
1,002,092	+		LRK54_RS04720	0.58	-2.3
1,002,092	+		LRK54_RS04720	0.58	+0.9
1,002,092	+		LRK54_RS04720	0.58	-1.8
1,002,092	+		LRK54_RS04720	0.58	-1.3
1,002,092	+		LRK54_RS04720	0.58	-2.3
1,002,092	+		LRK54_RS04720	0.58	-1.0
1,002,092	+		LRK54_RS04720	0.58	-2.4
1,002,092	+		LRK54_RS04720	0.58	-0.8
1,002,092	+		LRK54_RS04720	0.58	-3.3
1,002,093	-		LRK54_RS04720	0.58	-1.3
1,002,093	-		LRK54_RS04720	0.58	-2.1
1,002,093	-		LRK54_RS04720	0.58	-0.3
1,002,093	-		LRK54_RS04720	0.58	+0.7
1,002,093	-		LRK54_RS04720	0.58	-0.8
1,002,094	-		LRK54_RS04720	0.58	-1.3
1,002,563	+		LRK54_RS04720	0.70	-2.3
1,002,563	+		LRK54_RS04720	0.70	-0.8
1,002,563	+		LRK54_RS04720	0.70	-1.6
1,002,563	+		LRK54_RS04720	0.70	-0.8
1,002,563	+		LRK54_RS04720	0.70	-1.8
1,002,563	+		LRK54_RS04720	0.70	-1.3
1,002,563	+		LRK54_RS04720	0.70	-1.3
1,002,564	-				-0.8
1,002,564	-		LRK54_RS04720	0.70	-1.3
1,002,564	-		LRK54_RS04720	0.70	-1.6
1,002,576	-		LRK54_RS04720	0.70	-0.8
1,002,576	-		LRK54_RS04720	0.70	-1.6
1,002,873	-		LRK54_RS04720	0.78	-0.3
1,002,971	+		LRK54_RS04720	0.81	-1.6
1,002,984	+		LRK54_RS04720	0.81	-1.6
1,002,984	+		LRK54_RS04720	0.81	-0.3
1,002,984	+		LRK54_RS04720	0.81	-2.8
1,002,984	+		LRK54_RS04720	0.81	-2.3
1,002,984	+		LRK54_RS04720	0.81	+0.3
1,002,984	+		LRK54_RS04720	0.81	-1.3
1,002,984	+		LRK54_RS04720	0.81	+0.7
1,002,984	+		LRK54_RS04720	0.81	-2.1
1,002,985	-		LRK54_RS04720	0.81	-1.8
1,002,985	-		LRK54_RS04720	0.81	+0.7
1,003,172	+		LRK54_RS04720	0.86	+0.7
1,003,172	+		LRK54_RS04720	0.86	-1.7
1,003,172	+		LRK54_RS04720	0.86	-2.1
1,003,173	-		LRK54_RS04720	0.86	-0.3
1,003,173	-		LRK54_RS04720	0.86	+0.7
1,003,173	-		LRK54_RS04720	0.86	-1.6
1,003,173	-		LRK54_RS04720	0.86	-1.6
1,003,610	+				-0.9
1,003,610	+				-0.3
1,003,610	+				+0.7
1,003,610	+				-0.3
1,003,610	+				+0.3
1,003,610	+				-1.3
1,003,611	-				-1.9
1,003,611	-				-2.7
1,003,737	+				-2.1
1,003,738	-				-2.1
1,003,738	-				+1.3
1,003,738	-				-0.0
1,003,755	-				-0.0
1,003,755	-				-1.0
1,003,759	+				+1.1
1,003,759	+				-0.5
1,003,759	+				-0.9
1,003,759	+				-0.9
1,003,759	+				+1.0
1,003,759	+				-0.7
1,003,759	+				-0.6
1,003,759	+				-0.6
1,003,759	+				-1.4
1,003,760	-				+0.4
1,003,760	-				+0.5
1,003,760	-				-0.8
1,003,760	-				+0.2
1,003,760	-				+0.7
1,003,760	-				-0.4
1,003,760	-				-0.5
1,003,760	-				+0.2
1,003,760	-				-1.5
1,003,760	-				+0.7
1,003,760	-				-0.2
1,003,774	+				+0.5
1,003,775	-				-0.9
1,003,782	+				-0.1
1,003,782	+				+0.4
1,003,782	+				+0.5
1,003,782	+				-0.0
1,003,782	+				+1.5
1,003,782	+				-1.0
1,003,782	+				-0.5
1,003,783	-				+0.8
1,003,783	-				-0.9
1,003,783	-				+1.7
1,003,783	-				+0.3
1,003,783	-				+1.1
1,003,783	-				-1.0
1,003,783	-				-2.0
1,003,783	-				+0.2
1,003,870	+				+0.7
1,003,870	+				-0.9
1,003,870	+				-0.3
1,003,870	+				+0.7
1,003,870	+				+0.6
1,003,870	+				+0.6
1,003,870	+				-0.1
1,003,870	+				+2.7
1,003,870	+				-0.5
1,003,870	+				-0.3
1,003,870	+				+0.4
1,003,870	+				+0.4
1,003,870	+				-0.1
1,003,870	+				-0.4
1,003,870	+				+1.0
1,003,871	-				-0.3
1,003,871	-				-0.0
1,003,871	-				-0.5
1,003,871	-				+1.8
1,003,871	-				+0.3
1,003,871	-				+0.6
1,003,871	-				+0.3
1,003,871	-				+0.6
1,003,871	-				+1.2
1,003,871	-				+0.9
1,003,871	-				-0.9
1,003,871	-				+2.7
1,003,871	-				-1.3
1,003,871	-				+0.6
1,003,871	-				-0.3
1,003,900	+				-0.4
1,003,900	+				+0.5
1,003,900	+				-0.5
1,003,900	+				+0.7
1,003,900	+				+0.2
1,003,900	+				-1.3
1,003,900	+				+0.2
1,003,900	+				+3.3
1,003,900	+				-0.6
1,003,901	-				+2.3
1,003,901	-				-0.6
1,003,901	-				-0.1
1,003,901	-				+1.2
1,003,901	-				-1.0
1,003,901	-				+0.2
1,003,901	-				-0.5
1,003,901	-				-0.3
1,004,059	+		LRK54_RS04725	0.30	-0.9
1,004,059	+		LRK54_RS04725	0.30	+0.7
1,004,059	+		LRK54_RS04725	0.30	-0.4
1,004,059	+		LRK54_RS04725	0.30	+1.5
1,004,059	+		LRK54_RS04725	0.30	-0.6
1,004,059	+		LRK54_RS04725	0.30	+0.9
1,004,059	+		LRK54_RS04725	0.30	-1.4
1,004,059	+		LRK54_RS04725	0.30	-0.4
1,004,060	-		LRK54_RS04725	0.30	-0.3
1,004,060	-		LRK54_RS04725	0.30	-0.9
1,004,060	-		LRK54_RS04725	0.30	+0.3
1,004,060	-		LRK54_RS04725	0.30	+1.5
1,004,060	-		LRK54_RS04725	0.30	+1.1
1,004,060	-		LRK54_RS04725	0.30	+0.3
1,004,116	+		LRK54_RS04725	0.38	-0.6
1,004,116	+		LRK54_RS04725	0.38	+0.5
1,004,116	+		LRK54_RS04725	0.38	-2.3
1,004,116	+		LRK54_RS04725	0.38	-0.2
1,004,117	-		LRK54_RS04725	0.38	+1.4
1,004,117	-		LRK54_RS04725	0.38	+0.7
1,004,117	-		LRK54_RS04725	0.38	+0.6
1,004,117	-		LRK54_RS04725	0.38	+0.2
1,004,117	-		LRK54_RS04725	0.38	+0.7
1,004,212	+		LRK54_RS04725	0.50	-0.6
1,004,212	+		LRK54_RS04725	0.50	-2.1
1,004,212	+		LRK54_RS04725	0.50	-0.1
1,004,212	+		LRK54_RS04725	0.50	-1.2
1,004,212	+		LRK54_RS04725	0.50	-0.2
1,004,212	+		LRK54_RS04725	0.50	-1.0
1,004,212	+		LRK54_RS04725	0.50	+1.1
1,004,213	-		LRK54_RS04725	0.50	+1.1
1,004,213	-		LRK54_RS04725	0.50	-0.9
1,004,213	-		LRK54_RS04725	0.50	-0.2
1,004,213	-		LRK54_RS04725	0.50	+1.3
1,004,213	-		LRK54_RS04725	0.50	+0.3
1,004,213	-		LRK54_RS04725	0.50	-0.4
1,004,213	-		LRK54_RS04725	0.50	+0.1
1,004,213	-		LRK54_RS04725	0.50	+1.3
1,004,350	+		LRK54_RS04725	0.68	+0.7
1,004,350	+		LRK54_RS04725	0.68	+0.7
1,004,350	+		LRK54_RS04725	0.68	+0.6
1,004,350	+		LRK54_RS04725	0.68	+1.6
1,004,350	+		LRK54_RS04725	0.68	-0.8
1,004,350	+		LRK54_RS04725	0.68	-1.4
1,004,350	+		LRK54_RS04725	0.68	-0.6
1,004,350	+		LRK54_RS04725	0.68	-1.1
1,004,350	+		LRK54_RS04725	0.68	-0.0
1,004,350	+		LRK54_RS04725	0.68	-0.0
1,004,350	+		LRK54_RS04725	0.68	+0.3
1,004,350	+		LRK54_RS04725	0.68	-0.6
1,004,350	+		LRK54_RS04725	0.68	+0.4
1,004,350	+		LRK54_RS04725	0.68	+0.3
1,004,350	+		LRK54_RS04725	0.68	-0.5
1,004,350	+		LRK54_RS04725	0.68	-2.0
1,004,350	+		LRK54_RS04725	0.68	+1.3
1,004,350	+		LRK54_RS04725	0.68	-0.8
1,004,350	+		LRK54_RS04725	0.68	+1.0
1,004,350	+		LRK54_RS04725	0.68	-0.1
1,004,350	+		LRK54_RS04725	0.68	-1.4
1,004,350	+		LRK54_RS04725	0.68	+0.3
1,004,350	+		LRK54_RS04725	0.68	-1.9
1,004,350	+		LRK54_RS04725	0.68	-0.7
1,004,350	+		LRK54_RS04725	0.68	-0.4
1,004,350	+		LRK54_RS04725	0.68	+0.3
1,004,350	+		LRK54_RS04725	0.68	-0.0
1,004,350	+		LRK54_RS04725	0.68	-1.6
1,004,351	-		LRK54_RS04725	0.68	-0.9
1,004,351	-		LRK54_RS04725	0.68	+0.9
1,004,351	-		LRK54_RS04725	0.68	+1.0
1,004,351	-		LRK54_RS04725	0.68	-1.9
1,004,351	-		LRK54_RS04725	0.68	-0.3
1,004,351	-		LRK54_RS04725	0.68	+0.4
1,004,351	-		LRK54_RS04725	0.68	-0.5
1,004,351	-		LRK54_RS04725	0.68	+0.1
1,004,351	-		LRK54_RS04725	0.68	+0.7
1,004,351	-		LRK54_RS04725	0.68	+0.6
1,004,351	-		LRK54_RS04725	0.68	+0.7
1,004,351	-		LRK54_RS04725	0.68	+0.5
1,004,351	-		LRK54_RS04725	0.68	+0.2
1,004,351	-		LRK54_RS04725	0.68	-0.6
1,004,351	-		LRK54_RS04725	0.68	+0.1
1,004,351	-		LRK54_RS04725	0.68	-1.0
1,004,351	-		LRK54_RS04725	0.68	+2.1
1,004,351	-		LRK54_RS04725	0.68	-0.6
1,004,351	-		LRK54_RS04725	0.68	+0.7
1,004,351	-		LRK54_RS04725	0.68	+0.6
1,004,351	-		LRK54_RS04725	0.68	+0.2
1,004,351	-		LRK54_RS04725	0.68	+0.5
1,004,371	+		LRK54_RS04725	0.71	+0.1
1,004,371	+		LRK54_RS04725	0.71	-0.1
1,004,371	+		LRK54_RS04725	0.71	-0.5
1,004,371	+		LRK54_RS04725	0.71	-0.9
1,004,371	+		LRK54_RS04725	0.71	-0.6
1,004,371	+		LRK54_RS04725	0.71	-0.3
1,004,371	+		LRK54_RS04725	0.71	+0.3
1,004,371	+		LRK54_RS04725	0.71	-0.2
1,004,371	+		LRK54_RS04725	0.71	-1.3
1,004,371	+		LRK54_RS04725	0.71	+0.1
1,004,371	+		LRK54_RS04725	0.71	+1.7
1,004,371	+		LRK54_RS04725	0.71	+0.2
1,004,371	+		LRK54_RS04725	0.71	+0.7
1,004,371	+		LRK54_RS04725	0.71	-0.8
1,004,371	+		LRK54_RS04725	0.71	-0.6
1,004,371	+		LRK54_RS04725	0.71	-0.7
1,004,371	+		LRK54_RS04725	0.71	+0.5
1,004,372	-		LRK54_RS04725	0.71	+0.5
1,004,372	-		LRK54_RS04725	0.71	-0.1
1,004,372	-		LRK54_RS04725	0.71	+0.2
1,004,372	-		LRK54_RS04725	0.71	+0.3
1,004,372	-		LRK54_RS04725	0.71	+0.5
1,004,372	-		LRK54_RS04725	0.71	+0.6
1,004,372	-		LRK54_RS04725	0.71	+0.7
1,004,372	-		LRK54_RS04725	0.71	-0.4
1,004,372	-		LRK54_RS04725	0.71	+1.4
1,004,372	-		LRK54_RS04725	0.71	+0.7
1,004,372	-		LRK54_RS04725	0.71	-1.6
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1,004,372	-		LRK54_RS04725	0.71	+1.1
1,004,372	-		LRK54_RS04725	0.71	+0.4
1,004,372	-		LRK54_RS04725	0.71	-0.3
1,004,372	-		LRK54_RS04725	0.71	+1.1
1,004,372	-		LRK54_RS04725	0.71	+2.7
1,004,372	-		LRK54_RS04725	0.71	+0.6
1,004,372	-		LRK54_RS04725	0.71	-0.1
1,004,372	-		LRK54_RS04725	0.71	-0.1
1,004,372	-		LRK54_RS04725	0.71	+0.4
1,004,372	-		LRK54_RS04725	0.71	+3.1
1,004,372	-		LRK54_RS04725	0.71	+1.0
1,004,372	-		LRK54_RS04725	0.71	-0.3
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1,004,372	-		LRK54_RS04725	0.71	-0.2
1,004,401	+		LRK54_RS04725	0.75	-0.1
1,004,401	+		LRK54_RS04725	0.75	+0.5
1,004,401	+		LRK54_RS04725	0.75	-1.3
1,004,401	+		LRK54_RS04725	0.75	+0.6
1,004,401	+		LRK54_RS04725	0.75	-1.6
1,004,401	+		LRK54_RS04725	0.75	-0.3
1,004,401	+		LRK54_RS04725	0.75	+1.3
1,004,401	+		LRK54_RS04725	0.75	+0.6
1,004,401	+		LRK54_RS04725	0.75	+0.7
1,004,401	+		LRK54_RS04725	0.75	-0.7
1,004,401	+		LRK54_RS04725	0.75	-2.1
1,004,401	+		LRK54_RS04725	0.75	-0.5
1,004,401	+		LRK54_RS04725	0.75	+0.6
1,004,402	-		LRK54_RS04725	0.75	-2.4
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1,004,402	-		LRK54_RS04725	0.75	-0.0
1,004,402	-		LRK54_RS04725	0.75	-0.3
1,004,402	-		LRK54_RS04725	0.75	+0.7
1,004,402	-		LRK54_RS04725	0.75	-0.9
1,004,402	-		LRK54_RS04725	0.75	+0.8
1,004,402	-		LRK54_RS04725	0.75	-0.8
1,004,402	-		LRK54_RS04725	0.75	+0.4
1,004,402	-		LRK54_RS04725	0.75	+1.7
1,004,402	-		LRK54_RS04725	0.75	-0.5
1,004,402	-		LRK54_RS04725	0.75	+0.7
1,004,402	-		LRK54_RS04725	0.75	-0.3
1,004,402	-		LRK54_RS04725	0.75	+0.1