Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS04615

Experiment: R2A with SpecU metal mix 1 X

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLRK54_RS04610 and LRK54_RS04615 are separated by 127 nucleotidesLRK54_RS04615 and LRK54_RS04620 are separated by 2 nucleotidesLRK54_RS04620 and LRK54_RS04625 are separated by 9 nucleotides LRK54_RS04610: LRK54_RS04610 - bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD, at 981,253 to 982,314 _RS04610 LRK54_RS04615: LRK54_RS04615 - transcriptional regulator NrdR, at 982,442 to 982,954 _RS04615 LRK54_RS04620: LRK54_RS04620 - CTP synthase, at 982,957 to 983,655 _RS04620 LRK54_RS04625: LRK54_RS04625 - serine hydroxymethyltransferase, at 983,665 to 984,918 _RS04625 Position (kb) 982 983Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 982.563 kb on + strand, within LRK54_RS04615at 982.563 kb on + strand, within LRK54_RS04615at 982.563 kb on + strand, within LRK54_RS04615at 982.563 kb on + strand, within LRK54_RS04615at 982.564 kb on - strand, within LRK54_RS04615at 982.564 kb on - strand, within LRK54_RS04615at 982.584 kb on + strand, within LRK54_RS04615at 982.584 kb on + strand, within LRK54_RS04615at 982.584 kb on + strand, within LRK54_RS04615at 982.584 kb on + strand, within LRK54_RS04615at 982.584 kb on + strand, within LRK54_RS04615at 982.584 kb on + strand, within LRK54_RS04615at 982.584 kb on + strand, within LRK54_RS04615at 982.584 kb on + strand, within LRK54_RS04615at 982.585 kb on - strand, within LRK54_RS04615at 982.585 kb on - strand, within LRK54_RS04615at 982.585 kb on - strand, within LRK54_RS04615at 982.585 kb on - strand, within LRK54_RS04615at 982.961 kb on + strandat 982.961 kb on + strandat 982.961 kb on + strandat 982.961 kb on + strandat 982.961 kb on + strandat 982.961 kb on + strandat 982.961 kb on + strandat 982.961 kb on + strandat 982.961 kb on + strandat 982.961 kb on + strandat 982.961 kb on + strandat 982.961 kb on + strandat 982.961 kb on + strandat 982.961 kb on + strandat 982.961 kb on + strandat 982.961 kb on + strandat 982.961 kb on + strandat 982.961 kb on + strandat 982.961 kb on + strandat 982.961 kb on + strandat 982.961 kb on + strandat 982.962 kb on - strandat 982.962 kb on - strandat 982.962 kb on - strandat 982.962 kb on - strandat 982.962 kb on - strandat 982.962 kb on - strandat 982.962 kb on - strandat 982.962 kb on - strandat 982.962 kb on - strandat 982.962 kb on - strandat 982.962 kb on - strandat 982.962 kb on - strandat 982.962 kb on - strandat 982.962 kb on - strandat 982.962 kb on - strandat 982.962 kb on - strandat 982.962 kb on - strandat 982.962 kb on - strandat 982.962 kb on - strandat 982.962 kb on - strandat 982.962 kb on - strandat 982.962 kb on - strandat 982.962 kb on - strandat 982.962 kb on - strandat 982.962 kb on - strandat 982.962 kb on - strandat 982.962 kb on - strandat 983.165 kb on + strand, within LRK54_RS04620at 983.165 kb on + strand, within LRK54_RS04620at 983.165 kb on + strand, within LRK54_RS04620at 983.165 kb on + strand, within LRK54_RS04620at 983.165 kb on + strand, within LRK54_RS04620at 983.165 kb on + strand, within LRK54_RS04620at 983.165 kb on + strand, within LRK54_RS04620at 983.166 kb on - strand, within LRK54_RS04620at 983.177 kb on + strand, within LRK54_RS04620at 983.178 kb on - strand, within LRK54_RS04620at 983.178 kb on - strand, within LRK54_RS04620at 983.204 kb on + strand, within LRK54_RS04620at 983.204 kb on + strand, within LRK54_RS04620at 983.204 kb on + strand, within LRK54_RS04620at 983.204 kb on + strand, within LRK54_RS04620at 983.204 kb on + strand, within LRK54_RS04620at 983.204 kb on + strand, within LRK54_RS04620at 983.204 kb on + strand, within LRK54_RS04620at 983.204 kb on + strand, within LRK54_RS04620at 983.204 kb on + strand, within LRK54_RS04620at 983.205 kb on - strand, within LRK54_RS04620at 983.205 kb on - strand, within LRK54_RS04620at 983.205 kb on - strand, within LRK54_RS04620at 983.205 kb on - strand, within LRK54_RS04620at 983.205 kb on - strand, within LRK54_RS04620at 983.205 kb on - strand, within LRK54_RS04620at 983.205 kb on - strand, within LRK54_RS04620at 983.205 kb on - strand, within LRK54_RS04620at 983.205 kb on - strand, within LRK54_RS04620at 983.205 kb on - strand, within LRK54_RS04620at 983.205 kb on - strand, within LRK54_RS04620at 983.205 kb on - strand, within LRK54_RS04620at 983.239 kb on + strand, within LRK54_RS04620at 983.239 kb on + strand, within LRK54_RS04620at 983.239 kb on + strand, within LRK54_RS04620at 983.239 kb on + strand, within LRK54_RS04620at 983.239 kb on + strand, within LRK54_RS04620at 983.239 kb on + strand, within LRK54_RS04620at 983.240 kb on - strand, within LRK54_RS04620at 983.240 kb on - strand, within LRK54_RS04620at 983.240 kb on - strand, within LRK54_RS04620at 983.240 kb on - strand, within LRK54_RS04620at 983.240 kb on - strand, within LRK54_RS04620at 983.240 kb on - strand, within LRK54_RS04620at 983.240 kb on - strand, within LRK54_RS04620at 983.240 kb on - strand, within LRK54_RS04620at 983.240 kb on - strand, within LRK54_RS04620at 983.240 kb on - strand, within LRK54_RS04620at 983.354 kb on + strand, within LRK54_RS04620at 983.354 kb on + strand, within LRK54_RS04620at 983.354 kb on + strand, within LRK54_RS04620at 983.355 kb on - strand, within LRK54_RS04620at 983.355 kb on - strand, within LRK54_RS04620at 983.355 kb on - strand, within LRK54_RS04620at 983.355 kb on - strand, within LRK54_RS04620at 983.355 kb on - strand, within LRK54_RS04620at 983.672 kb on + strandat 983.672 kb on + strandat 983.672 kb on + strandat 983.672 kb on + strandat 983.672 kb on + strandat 983.673 kb on - strandat 983.673 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with SpecU metal mix 1 X
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982,563 + LRK54_RS04615 0.24 -1.0
982,563 + LRK54_RS04615 0.24 -1.6
982,563 + LRK54_RS04615 0.24 -0.6
982,563 + LRK54_RS04615 0.24 -0.1
982,564 - LRK54_RS04615 0.24 -2.0
982,564 - LRK54_RS04615 0.24 -0.3
982,584 + LRK54_RS04615 0.28 -1.4
982,584 + LRK54_RS04615 0.28 -1.3
982,584 + LRK54_RS04615 0.28 -0.8
982,584 + LRK54_RS04615 0.28 -0.4
982,584 + LRK54_RS04615 0.28 -1.3
982,584 + LRK54_RS04615 0.28 -1.6
982,584 + LRK54_RS04615 0.28 -0.5
982,584 + LRK54_RS04615 0.28 +0.7
982,585 - LRK54_RS04615 0.28 -1.6
982,585 - LRK54_RS04615 0.28 -1.8
982,585 - LRK54_RS04615 0.28 -1.3
982,585 - LRK54_RS04615 0.28 -0.8
982,961 + -2.7
982,961 + -0.8
982,961 + -2.0
982,961 + -0.8
982,961 + -0.4
982,961 + -1.1
982,961 + -0.8
982,961 + -0.7
982,961 + -3.3
982,961 + -2.1
982,961 + +0.3
982,961 + +0.7
982,961 + -0.3
982,961 + -0.7
982,961 + -1.6
982,961 + -1.4
982,961 + -3.0
982,961 + -0.8
982,961 + -0.3
982,961 + -0.5
982,961 + -1.0
982,962 - +0.4
982,962 - +1.2
982,962 - +0.2
982,962 - +0.4
982,962 - -0.3
982,962 - -0.3
982,962 - +0.8
982,962 - -0.3
982,962 - -0.0
982,962 - -0.9
982,962 - +1.3
982,962 - +0.5
982,962 - -3.1
982,962 - -1.6
982,962 - -0.4
982,962 - +2.0
982,962 - -1.6
982,962 - -0.3
982,962 - +0.2
982,962 - -0.0
982,962 - -0.0
982,962 - +0.5
982,962 - -1.0
982,962 - -1.3
982,962 - -0.3
982,962 - +0.7
982,962 - +1.7
983,165 + LRK54_RS04620 0.30 -2.0
983,165 + LRK54_RS04620 0.30 +0.5
983,165 + LRK54_RS04620 0.30 -0.3
983,165 + LRK54_RS04620 0.30 -0.6
983,165 + LRK54_RS04620 0.30 +0.5
983,165 + LRK54_RS04620 0.30 -0.3
983,165 + LRK54_RS04620 0.30 -1.3
983,166 - LRK54_RS04620 0.30 -0.8
983,177 + LRK54_RS04620 0.31 +0.2
983,178 - LRK54_RS04620 0.32 +0.5
983,178 - LRK54_RS04620 0.32 +0.3
983,204 + LRK54_RS04620 0.35 -0.3
983,204 + LRK54_RS04620 0.35 +0.3
983,204 + LRK54_RS04620 0.35 -0.3
983,204 + LRK54_RS04620 0.35 -1.1
983,204 + LRK54_RS04620 0.35 +0.2
983,204 + LRK54_RS04620 0.35 -0.1
983,204 + LRK54_RS04620 0.35 +0.0
983,204 + LRK54_RS04620 0.35 +0.5
983,204 + LRK54_RS04620 0.35 -0.1
983,205 - LRK54_RS04620 0.35 -1.7
983,205 - LRK54_RS04620 0.35 +0.4
983,205 - LRK54_RS04620 0.35 +0.7
983,205 - LRK54_RS04620 0.35 -1.1
983,205 - LRK54_RS04620 0.35 -0.2
983,205 - LRK54_RS04620 0.35 -0.3
983,205 - LRK54_RS04620 0.35 -1.1
983,205 - LRK54_RS04620 0.35 +1.7
983,205 - LRK54_RS04620 0.35 +1.0
983,205 - LRK54_RS04620 0.35 -0.8
983,205 - LRK54_RS04620 0.35 +0.0
983,205 - LRK54_RS04620 0.35 +0.0
983,239 + LRK54_RS04620 0.40 +0.7
983,239 + LRK54_RS04620 0.40 +0.2
983,239 + LRK54_RS04620 0.40 +1.6
983,239 + LRK54_RS04620 0.40 -2.1
983,239 + LRK54_RS04620 0.40 +0.2
983,239 + LRK54_RS04620 0.40 +0.7
983,240 - LRK54_RS04620 0.40 -0.3
983,240 - LRK54_RS04620 0.40 -0.2
983,240 - LRK54_RS04620 0.40 +0.3
983,240 - LRK54_RS04620 0.40 +0.6
983,240 - LRK54_RS04620 0.40 +0.2
983,240 - LRK54_RS04620 0.40 -0.1
983,240 - LRK54_RS04620 0.40 -0.7
983,240 - LRK54_RS04620 0.40 +0.8
983,240 - LRK54_RS04620 0.40 -0.8
983,240 - LRK54_RS04620 0.40 +0.1
983,354 + LRK54_RS04620 0.57 +0.4
983,354 + LRK54_RS04620 0.57 -2.8
983,354 + LRK54_RS04620 0.57 -0.3
983,355 - LRK54_RS04620 0.57 +0.2
983,355 - LRK54_RS04620 0.57 -0.5
983,355 - LRK54_RS04620 0.57 -1.4
983,355 - LRK54_RS04620 0.57 -1.8
983,355 - LRK54_RS04620 0.57 +0.2
983,672 + -0.4
983,672 + -0.9
983,672 + -0.6
983,672 + +1.2
983,672 + -1.4
983,673 - -0.1
983,673 - -0.4

Or see this region's nucleotide sequence