Experiment: R2A with SpecU metal mix 1 X
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK54_RS04360 and LRK54_RS04365 are separated by 277 nucleotides LRK54_RS04365 and LRK54_RS04370 are separated by 174 nucleotides
LRK54_RS04360: LRK54_RS04360 - proline--tRNA ligase, at 919,657 to 921,354
_RS04360
LRK54_RS04365: LRK54_RS04365 - H-NS histone family protein, at 921,632 to 921,955
_RS04365
LRK54_RS04370: LRK54_RS04370 - threonine/serine exporter family protein, at 922,130 to 923,410
_RS04370
Position (kb) 921
922 Strain fitness (log2 ratio) -2
-1
0
1 at 921.371 kb on + strand at 921.372 kb on - strand at 921.372 kb on - strand at 921.372 kb on - strand at 921.439 kb on + strand at 921.439 kb on + strand at 921.439 kb on + strand at 921.440 kb on - strand at 921.463 kb on - strand at 921.463 kb on - strand at 921.481 kb on + strand at 921.482 kb on - strand at 921.482 kb on - strand at 921.482 kb on - strand at 921.509 kb on + strand at 921.515 kb on + strand at 921.516 kb on - strand at 921.526 kb on + strand at 921.577 kb on + strand at 921.577 kb on + strand at 921.577 kb on + strand at 921.577 kb on + strand at 921.580 kb on + strand at 921.581 kb on - strand at 921.581 kb on - strand at 921.604 kb on + strand at 921.604 kb on + strand at 921.617 kb on + strand at 921.618 kb on - strand at 921.643 kb on + strand at 921.644 kb on - strand at 921.774 kb on - strand, within LRK54_RS04365 at 921.845 kb on + strand, within LRK54_RS04365 at 921.846 kb on - strand, within LRK54_RS04365 at 922.131 kb on + strand at 922.131 kb on + strand at 922.131 kb on + strand at 922.131 kb on + strand at 922.131 kb on + strand at 922.132 kb on - strand at 922.132 kb on - strand at 922.132 kb on - strand at 922.132 kb on - strand at 922.132 kb on - strand at 922.132 kb on - strand at 922.157 kb on + strand at 922.157 kb on + strand at 922.157 kb on + strand at 922.158 kb on - strand at 922.158 kb on - strand at 922.158 kb on - strand at 922.158 kb on - strand at 922.347 kb on + strand, within LRK54_RS04370 at 922.348 kb on - strand, within LRK54_RS04370 at 922.348 kb on - strand, within LRK54_RS04370 at 922.449 kb on + strand, within LRK54_RS04370 at 922.449 kb on + strand, within LRK54_RS04370 at 922.449 kb on + strand, within LRK54_RS04370 at 922.449 kb on + strand, within LRK54_RS04370 at 922.449 kb on + strand, within LRK54_RS04370 at 922.450 kb on - strand, within LRK54_RS04370
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with SpecU metal mix 1 X remove 921,371 + -1.6 921,372 - -0.3 921,372 - +0.7 921,372 - +1.0 921,439 + +0.7 921,439 + +0.5 921,439 + -1.4 921,440 - -0.1 921,463 - +0.1 921,463 - -0.1 921,481 + +1.7 921,482 - -0.7 921,482 - -1.0 921,482 - +0.7 921,509 + -0.9 921,515 + -0.3 921,516 - +0.0 921,526 + -0.3 921,577 + -0.9 921,577 + -1.1 921,577 + -0.5 921,577 + +0.3 921,580 + +1.1 921,581 - +1.1 921,581 - -0.3 921,604 + -2.3 921,604 + -0.1 921,617 + +0.2 921,618 - +0.9 921,643 + -0.3 921,644 - +0.2 921,774 - LRK54_RS04365 0.44 +0.4 921,845 + LRK54_RS04365 0.66 -2.1 921,846 - LRK54_RS04365 0.66 -2.5 922,131 + -2.7 922,131 + -0.4 922,131 + +0.2 922,131 + -0.1 922,131 + +0.7 922,132 - +0.7 922,132 - +0.1 922,132 - -2.1 922,132 - -0.1 922,132 - -0.3 922,132 - +0.1 922,157 + -0.5 922,157 + +1.6 922,157 + -0.7 922,158 - +1.7 922,158 - -1.0 922,158 - -0.8 922,158 - -1.3 922,347 + LRK54_RS04370 0.17 -0.8 922,348 - LRK54_RS04370 0.17 -0.9 922,348 - LRK54_RS04370 0.17 -0.0 922,449 + LRK54_RS04370 0.25 +0.7 922,449 + LRK54_RS04370 0.25 -1.1 922,449 + LRK54_RS04370 0.25 -0.3 922,449 + LRK54_RS04370 0.25 -1.0 922,449 + LRK54_RS04370 0.25 -1.3 922,450 - LRK54_RS04370 0.25 -0.5
Or see this region's nucleotide sequence