Experiment: R2A with SpecU metal mix 1 X
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK54_RS04340 and LRK54_RS04345 are separated by 5 nucleotides LRK54_RS04345 and LRK54_RS04350 overlap by 4 nucleotides LRK54_RS04350 and LRK54_RS04355 are separated by 111 nucleotides LRK54_RS04355 and LRK54_RS04360 are separated by 105 nucleotides
LRK54_RS04340: LRK54_RS04340 - ribosomal protein S18-alanine N-acetyltransferase, at 917,262 to 917,732
_RS04340
LRK54_RS04345: LRK54_RS04345 - hypothetical protein, at 917,738 to 918,238
_RS04345
LRK54_RS04350: LRK54_RS04350 - phosphatidylcholine/phosphatidylserine synthase, at 918,235 to 919,017
_RS04350
LRK54_RS04355: LRK54_RS04355 - DUF4124 domain-containing protein, at 919,129 to 919,551
_RS04355
LRK54_RS04360: LRK54_RS04360 - proline--tRNA ligase, at 919,657 to 921,354
_RS04360
Position (kb) 918
919
920 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 917.264 kb on - strand at 917.323 kb on + strand, within LRK54_RS04340 at 917.323 kb on + strand, within LRK54_RS04340 at 917.324 kb on - strand, within LRK54_RS04340 at 917.324 kb on - strand, within LRK54_RS04340 at 917.324 kb on - strand, within LRK54_RS04340 at 917.324 kb on - strand, within LRK54_RS04340 at 917.327 kb on - strand, within LRK54_RS04340 at 917.327 kb on - strand, within LRK54_RS04340 at 917.368 kb on + strand, within LRK54_RS04340 at 917.368 kb on + strand, within LRK54_RS04340 at 917.368 kb on + strand, within LRK54_RS04340 at 917.369 kb on - strand, within LRK54_RS04340 at 917.369 kb on - strand, within LRK54_RS04340 at 917.369 kb on - strand, within LRK54_RS04340 at 917.369 kb on - strand, within LRK54_RS04340 at 917.369 kb on - strand, within LRK54_RS04340 at 917.369 kb on - strand, within LRK54_RS04340 at 917.369 kb on - strand, within LRK54_RS04340 at 917.412 kb on + strand, within LRK54_RS04340 at 917.413 kb on - strand, within LRK54_RS04340 at 917.644 kb on + strand, within LRK54_RS04340 at 917.644 kb on + strand, within LRK54_RS04340 at 917.644 kb on + strand, within LRK54_RS04340 at 917.644 kb on + strand, within LRK54_RS04340 at 917.644 kb on + strand, within LRK54_RS04340 at 917.644 kb on + strand, within LRK54_RS04340 at 917.644 kb on + strand, within LRK54_RS04340 at 917.644 kb on + strand, within LRK54_RS04340 at 917.644 kb on + strand, within LRK54_RS04340 at 917.645 kb on - strand, within LRK54_RS04340 at 917.645 kb on - strand, within LRK54_RS04340 at 917.645 kb on - strand, within LRK54_RS04340 at 917.645 kb on - strand, within LRK54_RS04340 at 917.645 kb on - strand, within LRK54_RS04340 at 917.645 kb on - strand, within LRK54_RS04340 at 917.645 kb on - strand, within LRK54_RS04340 at 917.645 kb on - strand, within LRK54_RS04340 at 918.311 kb on + strand at 918.311 kb on + strand at 918.311 kb on + strand at 918.311 kb on + strand at 918.311 kb on + strand at 918.312 kb on - strand at 918.312 kb on - strand at 918.312 kb on - strand at 918.312 kb on - strand at 918.312 kb on - strand at 918.312 kb on - strand at 918.312 kb on - strand at 918.312 kb on - strand at 918.312 kb on - strand at 918.312 kb on - strand at 918.312 kb on - strand at 918.312 kb on - strand at 918.312 kb on - strand at 918.597 kb on - strand, within LRK54_RS04350 at 918.597 kb on - strand, within LRK54_RS04350 at 918.597 kb on - strand, within LRK54_RS04350 at 918.597 kb on - strand, within LRK54_RS04350 at 918.736 kb on - strand, within LRK54_RS04350 at 918.736 kb on - strand, within LRK54_RS04350 at 918.736 kb on - strand, within LRK54_RS04350 at 918.736 kb on - strand, within LRK54_RS04350 at 918.736 kb on - strand, within LRK54_RS04350 at 918.736 kb on - strand, within LRK54_RS04350 at 918.736 kb on - strand, within LRK54_RS04350 at 918.736 kb on - strand, within LRK54_RS04350 at 918.738 kb on - strand, within LRK54_RS04350 at 918.738 kb on - strand, within LRK54_RS04350 at 918.738 kb on - strand, within LRK54_RS04350 at 918.738 kb on - strand, within LRK54_RS04350 at 918.738 kb on - strand, within LRK54_RS04350 at 918.738 kb on - strand, within LRK54_RS04350 at 918.738 kb on - strand, within LRK54_RS04350 at 918.738 kb on - strand, within LRK54_RS04350 at 918.738 kb on - strand, within LRK54_RS04350 at 918.738 kb on - strand, within LRK54_RS04350 at 918.738 kb on - strand, within LRK54_RS04350 at 918.738 kb on - strand, within LRK54_RS04350 at 918.738 kb on - strand, within LRK54_RS04350 at 918.738 kb on - strand, within LRK54_RS04350 at 918.738 kb on - strand, within LRK54_RS04350 at 918.738 kb on - strand, within LRK54_RS04350 at 918.738 kb on - strand, within LRK54_RS04350 at 918.738 kb on - strand, within LRK54_RS04350 at 918.738 kb on - strand, within LRK54_RS04350 at 918.871 kb on + strand at 918.872 kb on - strand, within LRK54_RS04350 at 918.894 kb on - strand, within LRK54_RS04350 at 918.894 kb on - strand, within LRK54_RS04350 at 918.972 kb on - strand at 918.972 kb on - strand at 918.972 kb on - strand at 918.972 kb on - strand at 918.972 kb on - strand at 918.972 kb on - strand at 918.972 kb on - strand at 918.972 kb on - strand at 918.976 kb on - strand at 918.976 kb on - strand at 919.049 kb on + strand at 919.049 kb on + strand at 919.049 kb on + strand at 919.049 kb on + strand at 919.049 kb on + strand at 919.049 kb on + strand at 919.049 kb on + strand at 919.049 kb on + strand at 919.049 kb on + strand at 919.050 kb on - strand at 919.050 kb on - strand at 919.050 kb on - strand at 919.050 kb on - strand at 919.087 kb on + strand at 919.087 kb on + strand at 919.087 kb on + strand at 919.088 kb on - strand at 919.088 kb on - strand at 919.088 kb on - strand at 919.105 kb on + strand at 919.105 kb on + strand at 919.106 kb on - strand at 919.106 kb on - strand at 919.106 kb on - strand at 919.192 kb on + strand, within LRK54_RS04355 at 919.192 kb on + strand, within LRK54_RS04355 at 919.192 kb on + strand, within LRK54_RS04355 at 919.192 kb on + strand, within LRK54_RS04355 at 919.192 kb on + strand, within LRK54_RS04355 at 919.192 kb on + strand, within LRK54_RS04355 at 919.192 kb on + strand, within LRK54_RS04355 at 919.192 kb on + strand, within LRK54_RS04355 at 919.192 kb on + strand, within LRK54_RS04355 at 919.193 kb on - strand, within LRK54_RS04355 at 919.193 kb on - strand, within LRK54_RS04355 at 919.193 kb on - strand, within LRK54_RS04355 at 919.193 kb on - strand, within LRK54_RS04355 at 919.193 kb on - strand, within LRK54_RS04355 at 919.193 kb on - strand, within LRK54_RS04355 at 919.225 kb on + strand, within LRK54_RS04355 at 919.225 kb on + strand, within LRK54_RS04355 at 919.226 kb on - strand, within LRK54_RS04355 at 919.226 kb on - strand, within LRK54_RS04355 at 919.226 kb on - strand, within LRK54_RS04355 at 919.258 kb on + strand, within LRK54_RS04355 at 919.258 kb on + strand, within LRK54_RS04355 at 919.258 kb on + strand, within LRK54_RS04355 at 919.258 kb on + strand, within LRK54_RS04355 at 919.258 kb on + strand, within LRK54_RS04355 at 919.258 kb on + strand, within LRK54_RS04355 at 919.258 kb on + strand, within LRK54_RS04355 at 919.258 kb on + strand, within LRK54_RS04355 at 919.258 kb on + strand, within LRK54_RS04355 at 919.258 kb on + strand, within LRK54_RS04355 at 919.258 kb on + strand, within LRK54_RS04355 at 919.258 kb on + strand, within LRK54_RS04355 at 919.258 kb on + strand, within LRK54_RS04355 at 919.258 kb on + strand, within LRK54_RS04355 at 919.259 kb on - strand, within LRK54_RS04355 at 919.259 kb on - strand, within LRK54_RS04355 at 919.259 kb on - strand, within LRK54_RS04355 at 919.259 kb on - strand, within LRK54_RS04355 at 919.259 kb on - strand, within LRK54_RS04355 at 919.259 kb on - strand, within LRK54_RS04355 at 919.259 kb on - strand, within LRK54_RS04355 at 919.259 kb on - strand, within LRK54_RS04355 at 919.259 kb on - strand, within LRK54_RS04355 at 919.259 kb on - strand, within LRK54_RS04355 at 919.259 kb on - strand, within LRK54_RS04355 at 919.259 kb on - strand, within LRK54_RS04355 at 919.259 kb on - strand, within LRK54_RS04355 at 919.522 kb on + strand at 919.522 kb on + strand at 919.522 kb on + strand at 919.522 kb on + strand at 919.522 kb on + strand at 919.522 kb on + strand at 919.522 kb on + strand at 919.522 kb on + strand at 919.522 kb on + strand at 919.522 kb on + strand at 919.522 kb on + strand at 919.522 kb on + strand at 919.522 kb on + strand at 919.522 kb on + strand at 919.523 kb on - strand at 919.523 kb on - strand at 919.523 kb on - strand at 919.523 kb on - strand at 919.523 kb on - strand at 919.523 kb on - strand at 919.523 kb on - strand at 919.523 kb on - strand at 919.523 kb on - strand at 919.523 kb on - strand at 919.523 kb on - strand at 919.523 kb on - strand at 919.523 kb on - strand at 919.523 kb on - strand at 919.523 kb on - strand at 919.523 kb on - strand at 919.523 kb on - strand at 919.622 kb on - strand at 919.622 kb on - strand at 919.622 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with SpecU metal mix 1 X remove 917,264 - +0.7 917,323 + LRK54_RS04340 0.13 -0.3 917,323 + LRK54_RS04340 0.13 +2.1 917,324 - LRK54_RS04340 0.13 -1.6 917,324 - LRK54_RS04340 0.13 +2.3 917,324 - LRK54_RS04340 0.13 -1.1 917,324 - LRK54_RS04340 0.13 -0.6 917,327 - LRK54_RS04340 0.14 -1.3 917,327 - LRK54_RS04340 0.14 +0.7 917,368 + LRK54_RS04340 0.23 -1.3 917,368 + LRK54_RS04340 0.23 -1.1 917,368 + LRK54_RS04340 0.23 +1.1 917,369 - LRK54_RS04340 0.23 -0.4 917,369 - LRK54_RS04340 0.23 +0.3 917,369 - LRK54_RS04340 0.23 -1.0 917,369 - LRK54_RS04340 0.23 -0.4 917,369 - LRK54_RS04340 0.23 -0.3 917,369 - LRK54_RS04340 0.23 -1.9 917,369 - LRK54_RS04340 0.23 +1.2 917,412 + LRK54_RS04340 0.32 -0.3 917,413 - LRK54_RS04340 0.32 +1.1 917,644 + LRK54_RS04340 0.81 +1.3 917,644 + LRK54_RS04340 0.81 -0.6 917,644 + LRK54_RS04340 0.81 -1.4 917,644 + LRK54_RS04340 0.81 +1.1 917,644 + LRK54_RS04340 0.81 -0.3 917,644 + LRK54_RS04340 0.81 -0.5 917,644 + LRK54_RS04340 0.81 -1.6 917,644 + LRK54_RS04340 0.81 -0.3 917,644 + LRK54_RS04340 0.81 -0.4 917,645 - LRK54_RS04340 0.81 -0.5 917,645 - LRK54_RS04340 0.81 -0.7 917,645 - LRK54_RS04340 0.81 -1.3 917,645 - LRK54_RS04340 0.81 +1.3 917,645 - LRK54_RS04340 0.81 +0.4 917,645 - LRK54_RS04340 0.81 -0.5 917,645 - LRK54_RS04340 0.81 -0.0 917,645 - LRK54_RS04340 0.81 +0.6 918,311 + -0.9 918,311 + -0.9 918,311 + -2.3 918,311 + -0.9 918,311 + -0.9 918,312 - -2.1 918,312 - -0.9 918,312 - -1.9 918,312 - -0.9 918,312 - -1.9 918,312 - -2.9 918,312 - -1.9 918,312 - -2.9 918,312 - -3.0 918,312 - -2.1 918,312 - -3.4 918,312 - -0.3 918,312 - +0.7 918,597 - LRK54_RS04350 0.46 +0.7 918,597 - LRK54_RS04350 0.46 -1.3 918,597 - LRK54_RS04350 0.46 -0.9 918,597 - LRK54_RS04350 0.46 -1.6 918,736 - LRK54_RS04350 0.64 -1.3 918,736 - LRK54_RS04350 0.64 -0.3 918,736 - LRK54_RS04350 0.64 -0.9 918,736 - LRK54_RS04350 0.64 -0.9 918,736 - LRK54_RS04350 0.64 -2.4 918,736 - LRK54_RS04350 0.64 -0.9 918,736 - LRK54_RS04350 0.64 -1.9 918,736 - LRK54_RS04350 0.64 -3.2 918,738 - LRK54_RS04350 0.64 -2.6 918,738 - LRK54_RS04350 0.64 -0.3 918,738 - LRK54_RS04350 0.64 -2.3 918,738 - LRK54_RS04350 0.64 -2.1 918,738 - LRK54_RS04350 0.64 -0.3 918,738 - LRK54_RS04350 0.64 -1.9 918,738 - LRK54_RS04350 0.64 -0.3 918,738 - LRK54_RS04350 0.64 -1.6 918,738 - LRK54_RS04350 0.64 -1.6 918,738 - LRK54_RS04350 0.64 -1.3 918,738 - LRK54_RS04350 0.64 -0.9 918,738 - LRK54_RS04350 0.64 -2.4 918,738 - LRK54_RS04350 0.64 -1.3 918,738 - LRK54_RS04350 0.64 -1.9 918,738 - LRK54_RS04350 0.64 -1.9 918,738 - LRK54_RS04350 0.64 -1.3 918,738 - LRK54_RS04350 0.64 -1.3 918,738 - LRK54_RS04350 0.64 -2.6 918,738 - LRK54_RS04350 0.64 -0.9 918,871 + -0.3 918,872 - LRK54_RS04350 0.81 -2.9 918,894 - LRK54_RS04350 0.84 -0.9 918,894 - LRK54_RS04350 0.84 -0.3 918,972 - -3.0 918,972 - -1.6 918,972 - -3.6 918,972 - -3.0 918,972 - -0.3 918,972 - +0.7 918,972 - -1.9 918,972 - -0.3 918,976 - +0.7 918,976 - +0.3 919,049 + +1.3 919,049 + -0.3 919,049 + -0.1 919,049 + +1.3 919,049 + -0.4 919,049 + -0.2 919,049 + -0.5 919,049 + +0.5 919,049 + -2.1 919,050 - -0.5 919,050 - +0.8 919,050 - +1.5 919,050 - +0.3 919,087 + -1.1 919,087 + -0.7 919,087 + -0.6 919,088 - -0.3 919,088 - +0.5 919,088 - +1.1 919,105 + -2.4 919,105 + -0.3 919,106 - +0.2 919,106 - +0.7 919,106 - +0.0 919,192 + LRK54_RS04355 0.15 -1.9 919,192 + LRK54_RS04355 0.15 -0.3 919,192 + LRK54_RS04355 0.15 -0.3 919,192 + LRK54_RS04355 0.15 +0.6 919,192 + LRK54_RS04355 0.15 -1.4 919,192 + LRK54_RS04355 0.15 -0.7 919,192 + LRK54_RS04355 0.15 +0.7 919,192 + LRK54_RS04355 0.15 -1.6 919,192 + LRK54_RS04355 0.15 -0.3 919,193 - LRK54_RS04355 0.15 -0.2 919,193 - LRK54_RS04355 0.15 +0.7 919,193 - LRK54_RS04355 0.15 -0.0 919,193 - LRK54_RS04355 0.15 -0.9 919,193 - LRK54_RS04355 0.15 -0.9 919,193 - LRK54_RS04355 0.15 -0.3 919,225 + LRK54_RS04355 0.23 -0.0 919,225 + LRK54_RS04355 0.23 -0.3 919,226 - LRK54_RS04355 0.23 -0.8 919,226 - LRK54_RS04355 0.23 -0.2 919,226 - LRK54_RS04355 0.23 +0.2 919,258 + LRK54_RS04355 0.30 +0.1 919,258 + LRK54_RS04355 0.30 -1.0 919,258 + LRK54_RS04355 0.30 -0.3 919,258 + LRK54_RS04355 0.30 +0.7 919,258 + LRK54_RS04355 0.30 +1.7 919,258 + LRK54_RS04355 0.30 -0.5 919,258 + LRK54_RS04355 0.30 -0.3 919,258 + LRK54_RS04355 0.30 -0.1 919,258 + LRK54_RS04355 0.30 +0.3 919,258 + LRK54_RS04355 0.30 +1.0 919,258 + LRK54_RS04355 0.30 +0.1 919,258 + LRK54_RS04355 0.30 +0.1 919,258 + LRK54_RS04355 0.30 -0.0 919,258 + LRK54_RS04355 0.30 -0.8 919,259 - LRK54_RS04355 0.31 +1.0 919,259 - LRK54_RS04355 0.31 -2.3 919,259 - LRK54_RS04355 0.31 +0.1 919,259 - LRK54_RS04355 0.31 -1.3 919,259 - LRK54_RS04355 0.31 -0.4 919,259 - LRK54_RS04355 0.31 -1.4 919,259 - LRK54_RS04355 0.31 -0.3 919,259 - LRK54_RS04355 0.31 +0.1 919,259 - LRK54_RS04355 0.31 +1.0 919,259 - LRK54_RS04355 0.31 +0.0 919,259 - LRK54_RS04355 0.31 +0.0 919,259 - LRK54_RS04355 0.31 +1.3 919,259 - LRK54_RS04355 0.31 -1.9 919,522 + -0.1 919,522 + -1.9 919,522 + +0.7 919,522 + +1.4 919,522 + +0.3 919,522 + +0.1 919,522 + -0.8 919,522 + -0.3 919,522 + +1.3 919,522 + +0.2 919,522 + -0.0 919,522 + -0.6 919,522 + +0.4 919,522 + +1.0 919,523 - -1.1 919,523 - +0.1 919,523 - -0.7 919,523 - +1.0 919,523 - +1.3 919,523 - -0.5 919,523 - -0.2 919,523 - -0.9 919,523 - -1.2 919,523 - +0.7 919,523 - +0.9 919,523 - +0.7 919,523 - -0.9 919,523 - +0.4 919,523 - +0.5 919,523 - -0.7 919,523 - +0.3 919,622 - +0.5 919,622 - +0.6 919,622 - -0.7
Or see this region's nucleotide sequence