Experiment: R2A with SpecU metal mix 1 X
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK54_RS03285 and LRK54_RS03290 are separated by 36 nucleotides LRK54_RS03290 and LRK54_RS03295 are separated by 192 nucleotides
LRK54_RS03285: LRK54_RS03285 - 1-deoxy-D-xylulose-5-phosphate reductoisomerase, at 706,039 to 707,214
_RS03285
LRK54_RS03290: LRK54_RS03290 - RIP metalloprotease RseP, at 707,251 to 708,597
_RS03290
LRK54_RS03295: LRK54_RS03295 - outer membrane protein assembly factor BamA, at 708,790 to 711,210
_RS03295
Position (kb) 707
708
709 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 707.215 kb on + strand at 707.215 kb on + strand at 707.215 kb on + strand at 707.215 kb on + strand at 707.215 kb on + strand at 707.215 kb on + strand at 707.215 kb on + strand at 707.215 kb on + strand at 707.215 kb on + strand at 707.215 kb on + strand at 707.216 kb on - strand at 707.216 kb on - strand at 707.216 kb on - strand at 707.216 kb on - strand at 707.216 kb on - strand at 707.216 kb on - strand at 707.216 kb on - strand at 707.245 kb on + strand at 707.245 kb on + strand at 707.245 kb on + strand at 707.245 kb on + strand at 707.245 kb on + strand at 707.245 kb on + strand at 707.245 kb on + strand at 707.245 kb on + strand at 707.245 kb on + strand at 707.245 kb on + strand at 707.245 kb on + strand at 707.245 kb on + strand at 707.245 kb on + strand at 707.245 kb on + strand at 707.246 kb on - strand at 707.246 kb on - strand at 707.246 kb on - strand at 707.246 kb on - strand at 707.246 kb on - strand at 707.246 kb on - strand at 707.246 kb on - strand at 707.455 kb on + strand, within LRK54_RS03290 at 707.455 kb on + strand, within LRK54_RS03290 at 707.455 kb on + strand, within LRK54_RS03290 at 707.872 kb on + strand, within LRK54_RS03290 at 707.872 kb on + strand, within LRK54_RS03290 at 708.457 kb on + strand, within LRK54_RS03290 at 708.457 kb on + strand, within LRK54_RS03290 at 708.457 kb on + strand, within LRK54_RS03290 at 708.457 kb on + strand, within LRK54_RS03290 at 708.457 kb on + strand, within LRK54_RS03290 at 708.457 kb on + strand, within LRK54_RS03290 at 708.460 kb on + strand, within LRK54_RS03290 at 708.460 kb on + strand, within LRK54_RS03290 at 708.460 kb on + strand, within LRK54_RS03290 at 708.460 kb on + strand, within LRK54_RS03290 at 708.460 kb on + strand, within LRK54_RS03290 at 708.460 kb on + strand, within LRK54_RS03290 at 708.460 kb on + strand, within LRK54_RS03290 at 708.460 kb on + strand, within LRK54_RS03290 at 708.460 kb on + strand, within LRK54_RS03290 at 708.460 kb on + strand, within LRK54_RS03290 at 708.520 kb on + strand at 708.565 kb on + strand at 708.565 kb on + strand at 708.565 kb on + strand at 708.565 kb on + strand at 708.771 kb on + strand at 708.771 kb on + strand at 708.771 kb on + strand at 708.771 kb on + strand at 708.771 kb on + strand at 708.771 kb on + strand at 708.771 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with SpecU metal mix 1 X remove 707,215 + +0.4 707,215 + +0.7 707,215 + -0.3 707,215 + -1.3 707,215 + +0.3 707,215 + +0.7 707,215 + -0.4 707,215 + -0.9 707,215 + +0.1 707,215 + -0.8 707,216 - -1.9 707,216 - -2.3 707,216 - -1.4 707,216 - -2.9 707,216 - -1.1 707,216 - -1.6 707,216 - +0.1 707,245 + -0.3 707,245 + -1.7 707,245 + +0.2 707,245 + -0.5 707,245 + -1.3 707,245 + -1.9 707,245 + -0.9 707,245 + +0.5 707,245 + -0.3 707,245 + +0.5 707,245 + -1.3 707,245 + -1.1 707,245 + -1.2 707,245 + -1.8 707,246 - -0.3 707,246 - -1.6 707,246 - -2.6 707,246 - -0.9 707,246 - -0.9 707,246 - -0.9 707,246 - -1.3 707,455 + LRK54_RS03290 0.15 +0.7 707,455 + LRK54_RS03290 0.15 -0.3 707,455 + LRK54_RS03290 0.15 +0.7 707,872 + LRK54_RS03290 0.46 -0.9 707,872 + LRK54_RS03290 0.46 -0.3 708,457 + LRK54_RS03290 0.90 -0.9 708,457 + LRK54_RS03290 0.90 -2.7 708,457 + LRK54_RS03290 0.90 -1.9 708,457 + LRK54_RS03290 0.90 -0.3 708,457 + LRK54_RS03290 0.90 +0.7 708,457 + LRK54_RS03290 0.90 -0.9 708,460 + LRK54_RS03290 0.90 -1.6 708,460 + LRK54_RS03290 0.90 -2.1 708,460 + LRK54_RS03290 0.90 -0.9 708,460 + LRK54_RS03290 0.90 -2.1 708,460 + LRK54_RS03290 0.90 -0.9 708,460 + LRK54_RS03290 0.90 -1.3 708,460 + LRK54_RS03290 0.90 -1.9 708,460 + LRK54_RS03290 0.90 -1.6 708,460 + LRK54_RS03290 0.90 -1.3 708,460 + LRK54_RS03290 0.90 -0.9 708,520 + -2.3 708,565 + -1.3 708,565 + -2.4 708,565 + -0.9 708,565 + -2.1 708,771 + +1.3 708,771 + +0.1 708,771 + -1.9 708,771 + +0.7 708,771 + -2.1 708,771 + +0.3 708,771 + +0.1
Or see this region's nucleotide sequence